NO29G01020, NO29G01020 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01020
Unique Name	NO29G01020
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1473
Alignment location	chr29:350262..351734 -

Link to JBrowse

Properties


Property Name	Value
Description	Transcription factor dp-1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:350262..351734 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007049	cell cycle
GO:0006355	regulation of transcription, DNA-templated
GO:0009987	cellular process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005667	transcription factor complex
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR037241	E2F-DP_heterodim
IPR015648	Transcrpt_fac_DP
IPR014889	Transc_factor_DP_C
IPR003316	E2F_WHTH_DNA-bd_dom

Homology

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: EWM21325.1 (transcription factor dp-1 [Nannochloropsis gaditana])

HSP 1 Score: 241.9 bits (616), Expect = 4.200e-60
Identity = 198/302 (65.56%), Postives = 230/302 (76.16%), Query Frame = 0

Query:  200 PGSADKNLKGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQK------------LVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVPESIY 490
            PGSADK+ KGLRHFSL+VCRKVEEKG TNYNEVADELVAEVL  + +P +G+ PVE YDEKNIRRRVYDALNVLMAMDIISKEKKEIRW+GLPS+                     + ++E LRR+KRR+E+++ KK+E+LQELI QR+AFQ+                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      I+NTH  T+I CEM EDRSDVFFNFS  FEL DDN+IL+RM+LQ+AS E+VE+FVP  ++ YV +S+Y
Sbjct:  216 PGSADKSSKGLRHFSLQVCRKVEEKGRTNYNEVADELVAEVLAQRAEP-SGTGPVEKYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWKGLPSN--------------------AQHDLEVLRRDKRRLESSLAKKRELLQELILQRIAFQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPLPFIIVNTHSQTLIHCEMAEDRSDVFFNFSAPFELADDNEILRRMQLQRASVEDVEAFVPEHLKAYVSDSVY 496

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: XP_012212062.1 (hypothetical protein SPRG_17349 [Saprolegnia parasitica CBS 223.65] >KDO17230.1 hypothetical protein SPRG_17349 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 183.0 bits (463), Expect = 2.300e-42
Identity = 115/283 (40.64%), Postives = 150/283 (53.00%), Query Frame = 0

Query:  203 ADKNLKGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVP 486
            ++K  KGLRHFS+KVC+KVEEK  T+YNEVADELV E +  +            YDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPS+                     ++++E L  EK +   ++ +KK+ LQEL+ Q++A + LV+RN                                                                ++NT   TVIQCEM+EDR DVFFNFS  FE+ DD++ILKRM L +A+  +V+  VP  + +Y+P
Sbjct:  194 SEKGSKGLRHFSMKVCQKVEEKHVTSYNEVADELVHEFVTMRPSDSV-------YDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSN--------------------AKQDLELLTMEKAQRLKSIEQKKQQLQELLLQQIALKNLVRRN------------------------------------------------EADATTAESRIALPFILVNTSKDTVIQCEMSEDRQDVFFNFSGPFEINDDSEILKRMDLHKAAPADVKDLVPEKLLRYLP 401

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: OWZ23475.1 (Transcription factor Dp-1 [Phytophthora megakarya])

HSP 1 Score: 182.2 bits (461), Expect = 3.900e-42
Identity = 118/293 (40.27%), Postives = 152/293 (51.88%), Query Frame = 0

Query:  200 PGSADKNL---KGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVL----NSKCDPGTGSVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVP 486
            PG   K L   KGLRHFS+KVC+KVEEK  T+YNEVADELV E +    N   +      P + YDEKNIRRRVYDALNVLMAMDIISKE+KEIRW+GLPS+L                    + + E L  E+     +V +KK+ LQ+L+ Q+VA + L+KRN +R+                                                             +NT + TVIQCEM+EDR D+FFNFS  FE+ DD DIL+R+ L +A   E++  VP  +  Y+P
Sbjct:  141 PGKKKKYLKINKGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMRPNDSANTHVDGYPFQVYDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNL--------------------QHDTEMLLAERNERMKSVEQKKQHLQDLLVQQVAMKNLLKRNTERK------------------------------------RKESENPASAPIVRDEGRVFLPFIAVNTSIDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQRLNLHKAPYAELKQMVPDKLLSYLP 377

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: XP_009841979.1 (hypothetical protein H257_15537 [Aphanomyces astaci] >ETV68550.1 hypothetical protein H257_15537 [Aphanomyces astaci])

HSP 1 Score: 179.5 bits (454), Expect = 2.600e-41
Identity = 112/285 (39.30%), Postives = 149/285 (52.28%), Query Frame = 0

Query:  203 ADKNLKGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVE--GYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVP 486
            +DK  KGLRHFS+KVC+KVEEK  T YNEVADELV E +  +        P E   YDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPS+                     ++++E L+ E  +   +V +KK+ LQEL+ Q++A + L++RN   +                                                            ++NT   T+IQCEM+EDR D+FFNFS  FE+ DD++ILKRM L   +  +  + +P  + +Y+P
Sbjct:  201 SDKGSKGLRHFSMKVCQKVEEKHVTTYNEVADELVHEFVTMR--------PAESVNYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSN--------------------AKQDLELLQMENAQRAKSVEQKKQQLQELLLQQIALKNLIQRNKQVD-----------------------------------------------KPSALCRISLPFILVNTSKDTIIQCEMSEDRQDIFFNFSGPFEINDDSEILKRMNLHHVAEADAATHIPEKLIRYLP 410

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: ETI45493.1 (hypothetical protein, variant [Phytophthora parasitica P1569] >ETK85445.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL91994.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM45292.1 hypothetical protein, variant [Phytophthora parasitica] >ETO74152.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP15317.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP43393.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 177.6 bits (449), Expect = 9.700e-41
Identity = 116/289 (40.14%), Postives = 149/289 (51.56%), Query Frame = 0

Query:  200 PGSADKNL---KGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVP 486
            PG   K L   KGLRHFS+KVC+KVEEK  T+YNEVADELV E +  + +          YDEKNIRRRVYDALNVLMAMDIISKE+KEIRW+GLPS+L                    + + E L  E+     +V +KK+ LQ+L+ Q+VA + L+KRN DR+                                                             +NT   TVIQCEM+EDR D+FFNFS  FE+ DD DIL+++ L +A   E++  VP  +  Y+P
Sbjct:  161 PGKKRKYLKINKGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMRPNDAV-------YDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNL--------------------QHDTEMLLAERNERMKSVEQKKQHLQDLLVQQVAMKNLLKRNADRK------------------------------------RKESENPTSATIVRDEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHKAPYAELKQMVPDKLLSYLP 386

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: ETK85447.1 (hypothetical protein, variant 3 [Phytophthora parasitica] >ETL91996.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETO74154.1 hypothetical protein, variant 3 [Phytophthora parasitica P1976] >ETP15319.1 hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 177.6 bits (449), Expect = 9.700e-41
Identity = 116/289 (40.14%), Postives = 149/289 (51.56%), Query Frame = 0

Query:  200 PGSADKNL---KGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVP 486
            PG   K L   KGLRHFS+KVC+KVEEK  T+YNEVADELV E +  + +          YDEKNIRRRVYDALNVLMAMDIISKE+KEIRW+GLPS+L                    + + E L  E+     +V +KK+ LQ+L+ Q+VA + L+KRN DR+                                                             +NT   TVIQCEM+EDR D+FFNFS  FE+ DD DIL+++ L +A   E++  VP  +  Y+P
Sbjct:   63 PGKKRKYLKINKGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMRPNDAV-------YDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNL--------------------QHDTEMLLAERNERMKSVEQKKQHLQDLLVQQVAMKNLLKRNADRK------------------------------------RKESENPTSATIVRDEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHKAPYAELKQMVPDKLLSYLP 288

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: XP_024586816.1 (transcription factor dp-1 [Plasmopara halstedii] >CEG50447.1 transcription factor dp-1 [Plasmopara halstedii])

HSP 1 Score: 177.2 bits (448), Expect = 1.300e-40
Identity = 114/289 (39.45%), Postives = 151/289 (52.25%), Query Frame = 0

Query:  200 PGSADKNL---KGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVP 486
            PG   K L   KGLRHFS+KVC+KVEEK  T+YNEVADELV E +  + +          YDEKNIRRRVYDALNVLMAMDIISKE+KEIRW+GLPS+L                    + + E L  E++    +V +KK+ LQ+L+ Q+VA + L+KRN +R+                                                             +NT   TVIQCEM+EDR D+FFNFS  FE+ DD DIL+++ L +A+  +++  VP  +  Y+P
Sbjct:   91 PGKKRKYLKINKGLRHFSMKVCQKVEEKHVTSYNEVADELVREFITMRPNDAV-------YDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNL--------------------QHDTEMLLIERKERMRSVEQKKQHLQDLLVQQVAMKNLIKRNAERK------------------------------------RKEIDDFASATIVRDEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHKAAYADLKQMVPEKLLSYLP 316

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: XP_008892972.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETL38889.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN21146.1 hypothetical protein, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 176.0 bits (445), Expect = 2.800e-40
Identity = 115/289 (39.79%), Postives = 148/289 (51.21%), Query Frame = 0

Query:  200 PGSADKNL---KGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVP 486
            PG   K L   KGLRHFS+KVC+KVEEK  T+YNEVADELV E +  + +          YDEKNIRRRVYDALNVLMAMDIISKE+KEIRW+GLPS+L                    + + E L  E+     +V +KK+ LQ+L+ Q+VA + L+KRN DR+                                                             +NT   TVIQCEM+EDR D+FFNFS  FE+ DD DIL+++ L +    E++  VP  +  Y+P
Sbjct:  161 PGKKRKYLKINKGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMRPNDAV-------YDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNL--------------------QHDTEMLLAERNERMKSVEQKKQHLQDLLVQQVAMKNLLKRNADRK------------------------------------RKESENPTSATIVRDEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHKVPYAELKQMVPDKLLSYLP 386

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: ETL38891.1 (hypothetical protein, variant 3 [Phytophthora parasitica])

HSP 1 Score: 176.0 bits (445), Expect = 2.800e-40
Identity = 115/289 (39.79%), Postives = 148/289 (51.21%), Query Frame = 0

Query:  200 PGSADKNL---KGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVP 486
            PG   K L   KGLRHFS+KVC+KVEEK  T+YNEVADELV E +  + +          YDEKNIRRRVYDALNVLMAMDIISKE+KEIRW+GLPS+L                    + + E L  E+     +V +KK+ LQ+L+ Q+VA + L+KRN DR+                                                             +NT   TVIQCEM+EDR D+FFNFS  FE+ DD DIL+++ L +    E++  VP  +  Y+P
Sbjct:   63 PGKKRKYLKINKGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMRPNDAV-------YDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNL--------------------QHDTEMLLAERNERMKSVEQKKQHLQDLLVQQVAMKNLLKRNADRK------------------------------------RKESENPTSATIVRDEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHKVPYAELKQMVPDKLLSYLP 288

[Close]

BLAST of NO29G01020 vs. NCBI_GenBank
Match: GAY03129.1 (Hypothetical protein PINS_010964 [Pythium insidiosum])

HSP 1 Score: 176.0 bits (445), Expect = 2.800e-40
Identity = 111/278 (39.93%), Postives = 143/278 (51.44%), Query Frame = 0

Query:  208 KGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINTHMVTVIQCEMTEDRSDVFFNFSNQFELKDDNDILKRMRLQQASGEEVESFVPATVRKYVP 486
            KGLRHFSL+VC+KVEEK  T YNEVADELV E +  + +          YDEKNIRRRVYDALNVLMA+DIISKE+KEIRWRGLP++L                    + + E L  E+     +V +KK+ LQ+L+ Q+VA + L+KRN  R                                                             ++NT   TVIQCEM+EDR D+FFNFSN FE+ DD +IL+R+ L +   EE+   VP  +  +VP
Sbjct:  191 KGLRHFSLRVCQKVEEKNVTTYNEVADELVREFVTMRPND-------TAYDEKNIRRRVYDALNVLMALDIISKERKEIRWRGLPTNL--------------------QHDAEMLIAERNERVKSVEQKKQHLQDLLVQQVAMKNLLKRNAKRR-----------------------------------------KESTLDALRDEGRIFLPFIVVNTSKDTVIQCEMSEDRQDIFFNFSNPFEINDDTEILRRLDLHKCPREELRHIVPEKLLSHVP 400

The following BLAST results are available for this feature:

BLAST of NO29G01020 vs. NCBI_GenBank

BLAST of NO29G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21325.1	4.200e-60	65.56	transcription factor dp-1 [Nannochloropsis gaditan...	[more]
XP_012212062.1	2.300e-42	40.64	hypothetical protein SPRG_17349 [Saprolegnia paras...	[more]
OWZ23475.1	3.900e-42	40.27	Transcription factor Dp-1 [Phytophthora megakarya]	[more]
XP_009841979.1	2.600e-41	39.30	hypothetical protein H257_15537 [Aphanomyces astac...	[more]
ETI45493.1	9.700e-41	40.14	hypothetical protein, variant [Phytophthora parasi...	[more]
ETK85447.1	9.700e-41	40.14	hypothetical protein, variant 3 [Phytophthora para...	[more]
XP_024586816.1	1.300e-40	39.45	transcription factor dp-1 [Plasmopara halstedii] >...	[more]
XP_008892972.1	2.800e-40	39.79	hypothetical protein, variant [Phytophthora parasi...	[more]
ETL38891.1	2.800e-40	39.79	hypothetical protein, variant 3 [Phytophthora para...	[more]
GAY03129.1	2.800e-40	39.93	Hypothetical protein PINS_010964 [Pythium insidios...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL061	nonsL061	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR038	ncniR038	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR081	ngnoR081	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005223	NSK005223	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO29G01020.1	NO29G01020.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559323	gene_8276	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100214g2	gene9105	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO29G01020.1	NO29G01020.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO29G01020 ID=NO29G01020|Name=NO29G01020|organism=Nannochloropsis oceanica|type=gene|length=1473bp
ATGGCGAAATTAACGAAGCGAGAGATAGAGCGTGCCGCCGCTGCAGCGGC
AGCAGCAGGAAGCACTCCTTTGCCAGCGCCACCAGCTGGCGCCGCCTCCT
CGGTTTCTGCTTCTCCATCGTCGACGTCACAATCCTACGACCATCCGCCC
TCTTCCGAAGAGATCGCGAGTTTGTTTACGGACGCGGCAGCTTTTGACGT
TGGAAGTAGTTGTGGTGGTGGTAGTGGTGCCTCGAGAACACCAGCAGCCG
CAGCAGCAGCAGCAGCAGCAGCAGGGGCGATAACGGGTGTTATGAAAAAA
GAAGTGGTAGACGAGGGAGGGAGGATGACGACAGGGCAGGTTATGCCTGC
GGGTAATGGGGAGAGAGGAGGGGGAGGGGGGAAACGCAGCGCAGATGAAG
CGTTCAGTGCTGCTGCCACAGGAGGAGGAGGGTGGGGTGGGGATGCAATG
TCAGTTGCGAGCAGCACGACCGATGGCTGGGATGAGGCAAGCCGAAGCTC
CACTAAATCTACAACGGCTACTGCTGGTGGTCGCCCCCGCAAGACCCCCA
CCCGTCCCTCGAGCAGCAGCAGCAGTAGCAATAGTAGCACTGCCACGCCT
GGGAGCGCTGATAAAAATCTGAAGGGCCTGCGTCATTTCTCCCTGAAAGT
CTGTCGGAAGGTAGAGGAGAAGGGGACGACGAATTACAACGAGGTGGCGG
ATGAGCTGGTCGCCGAAGTATTGAATAGTAAATGTGATCCTGGCACGGGC
TCGGTGCCTGTGGAGGGGTACGATGAAAAAAATATACGCCGGCGGGTCTA
TGACGCCCTGAACGTGTTGATGGCCATGGACATCATCAGCAAGGAGAAGA
AGGAGATTCGGTGGAGGGGGTTGCCCAGCAGCTTGGGCGAGGGAGGGGAT
GGTGGAGGAATGGGGGGGAGGAGGCGGTTAGGGAGGGGGGAGCCGGAGGA
GGAGATGGAGAGCTTGAGAAGGGAGAAGCGAAGGGTGGAGGCGGCTGTGG
GAAAGAAGAAGGAGGTCTTGCAAGAGCTGATTCGGCAACGGGTGGCTTTC
CAGAAGCTCGTCAAGCGGAATGGAGATAGGGAAGCGGAGCTTGCCGCTAC
AGCCACCTCTACCGCAGCAGCCGCAGCAGCCGCAAACGCCGTCTCGTCCT
CCCGTTCATCTGCTGGTGCTACTGCTGCGGCGGCGACGGCAGCAGCGGCA
GCAGCAGAGGCGGCTGCTGCGATGGAGAATGAGGAGCAGCGCAAGATTCC
TTTGCCGTTTATCATCATCAACACGCACATGGTGACTGTCATCCAGTGTG
AGATGACTGAGGATCGCAGTGATGTGTTTTTCAACTTTTCGAACCAATTT
GAGTTGAAGGATGACAATGATATTTTGAAGCGGATGAGATTGCAGCAGGC
AAGTGGGGAGGAGGTGGAGAGCTTTGTCCCAGCAACTGTACGAAAGTATG
TACCAGAGAGCATATATGGATGA

protein sequence of NO29G01020.1

>NO29G01020.1-protein ID=NO29G01020.1-protein|Name=NO29G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MAKLTKREIERAAAAAAAAGSTPLPAPPAGAASSVSASPSSTSQSYDHPP
SSEEIASLFTDAAAFDVGSSCGGGSGASRTPAAAAAAAAAAGAITGVMKK
EVVDEGGRMTTGQVMPAGNGERGGGGGKRSADEAFSAAATGGGGWGGDAM
SVASSTTDGWDEASRSSTKSTTATAGGRPRKTPTRPSSSSSSSNSSTATP
GSADKNLKGLRHFSLKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTG
SVPVEGYDEKNIRRRVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGD
GGGMGGRRRLGRGEPEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAF
QKLVKRNGDREAELAATATSTAAAAAAANAVSSSRSSAGATAAAATAAAA
AAEAAAAMENEEQRKIPLPFIIINTHMVTVIQCEMTEDRSDVFFNFSNQF
ELKDDNDILKRMRLQQASGEEVESFVPATVRKYVPESIYG*

Synonyms

Publications