NO29G00980, NO29G00980 (gene) Nannochloropsis oceanica

Overview
NameNO29G00980
Unique NameNO29G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2106
Alignment locationchr29:340642..342747 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:340642..342747 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029454ODR-4-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO29G00980 vs. NCBI_GenBank
Match: XP_005853456.1 (hypothetical protein NGA_0473610, partial [Nannochloropsis gaditana CCMP526] >EKU22905.1 hypothetical protein NGA_0473610, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 91.3 bits (225), Expect = 1.000e-14
Identity = 57/163 (34.97%), Postives = 83/163 (50.92%), Query Frame = 0 
Query:   68 KNEKQGEQEDQKEEGVAWRSLADVSRQTVEAHVKRLNRHIIAGLSICGLYAVSSDGGKQAIDVLQRLWPNPSS----XXXXXXXXXXXXXXLTCSSRELTWLHMCTQSSQLTCRVGPSKGEVGAAIVLYQEGRGIGGEGGGGIKYPLVIWHSFLNVNFKVVLN 227
            KN  + ++ D +EE V W  LADVSR+ VE HVK+L R ++ GLS+CGLYA++ + G  A+  L+RL P  +S                     ++ +L WLH+   S Q T RVGP  GE+    V  Q            +    V WHS ++V+ +V L+
Sbjct:    8 KNVNRKDRSDSEEEAVRWACLADVSRRRVELHVKQLTRLLVGGLSVCGLYAITPEPGTPAVTALKRLCPPFASSRGRRTPHEAFPASPQGHEPPAAHDLAWLHVNASSRQFTWRVGPPGGEMRPGEVTSQ----------ARLLSRFVPWHSIVHVDLEVGLS 160
The following BLAST results are available for this feature:
BLAST of NO29G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853456.11.000e-1434.97hypothetical protein NGA_0473610, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005220NSK005220Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00980.1NO29G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00980.1NO29G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00980 ID=NO29G00980|Name=NO29G00980|organism=Nannochloropsis oceanica|type=gene|length=2106bp
ATGTTTGTGAATGTAATAAGGCAGCAATCGATGCGTACGGTCGTCATTGA
TGAGGGGTTCAAGACGCGGCTATTGCGTACAATCGCTCAGCGCAAGCCAG
TGGAGGTCGGAGCTCTCTTAGGGCGGCAGCTCCCAGATGGTAGCCGTGAC
TTTTTAACACTTGCTGTTGCCTTGCCTTTACCTCAGGGGAAGAAGAGGAT
CAAAAACGAGAAGCAAGGAGAGCAAGAGGATCAGAAGGAGGAGGGAGTGG
CTTGGCGGAGTCTCGCGGATGTGTCCCGACAGACAGTGGAGGCGCATGTG
AAGCGGgtgaagagggagggaaagagggaaggagggaggatgggagggaa
agaggagaaaagagaggatagacagatgtatgccaatcacaggcataaat
tgcatatatgtatcgcaatacaggtaggtgttcgatatgagatctaaaag
gaaagcattctgaccaacggattcgcgacacgcacacacacacgacacgc
tacagTTAAACCGACATATAATCGCCGGCCTTAGTATCTGCGGTCTCTAT
GCCGTCTCATCTGATGGAGGCAAACAGGCCATCGACGTCCTGCAGCGTCT
TTGGCCCAACCCTTCCTCTAGCTCCTGCTCCTCCTCCTGCTCCTCCTCCA
CTACCCCTCCTCTCACTTGTTCATCTCGAGAACTAACATGGCTACACATG
TGCACCCAATCCAGTCAATTGACTTGTCGAGTTGGTCCATCCAAAGGGGA
GGTAGGCGCAGCCATAGTTCTATACCAAGAAGGACGAGGAATAGGAGGAG
AAGGAGGAGGAGGGATAAAGTACCCGTTGGTCATATGGCATTCTTTCCTT
AACGTCAATTTTAAAGTTGTTTTAAATGTTCCCTTTTTTGAGGAGGAGGA
GGAGGAGGGGGAGAAAAAGGAGGAAGACTCGGAAGGGAGCAGGAGGGAAG
GGAGGAGGAAGGAAGGGAGGGAGACATTCTTTCGGGGCTTGTGGAAGGCG
GCGCAAGCGGAAGGAAAGCGCTTTCGGAAGGCGCTTGCTTTTCCTTCTAT
CCCTCTCCCTCCTCCTACTGTGGCCACTGCCGATGCTGCTGCTTCTGCTT
CATGCAAGGGTGGAGCACCGGACAAGGAAGAAGCAGGAGGATCACTCATC
CCTCCTTCTCCGTCGTCCTCCACCTCATCCCCCTCCTCCTCCCTCTCATC
CTCCTTGGGTCGACGCCTGGATTTCTATACCCTCTTCGACAGCGAAGACG
AAGATGATGAGGAGGAACAAGCAGCAGTTATAGCAGCAGCACAATCAGAG
AATCTCCGACCTATCCAGATTAAGgtgactggaacagttgtctgtatcgc
ctgcctccacgacaatgaaggaatgcccgccgttgtacatgcacttaaaa
acgattacgcacgtacgcttctcgagagagtggagataatgtgggaggag
ggagtagggggggggggaaagagggagggagcgatgggtggagtggcgga
atggtacagTTCCCACGGCGGGTGTTGCTGTCTTCTCCCCCCTCCTCCTC
CTTCTCCTCGTCCTCGACGGTCCCGCTGGTTGATTACGTCTCGCCTGGCT
CTCTAAAGGAAGGGGGGAAGGAAGGGCAGGAAGAAGCATGGATTCGGTTA
CGAAATATAATGGCGAAAGCGGAAGGAGAAAAAGCAGGAGCAGTGGCGGT
ACCGGTAGGTGGGGTCTCTTCTACTTCCTCCTCCTTCTCTTCCTCGCCCT
TTAGACTGCTAGTCCTCGAACAACAAGCGCCTGCCTTGGCACCGTCAGTG
CTCTTGCGGGTAAATAATAACTTGGATGCGGACAAGACAACGGCAGCGAA
GCCAGCAGCCAAAGCAGCAGCAGTACCAGCAGCACCAGTAGCAGCACCAG
TGgtaagaaagagaccgacggcagccgcaacaatgacaacgactacaaga
gcaacggctacaaacacagccactactaaaaggaaagccttgcgctcttc
tccctccactctctcaaagGCTACTCTCCTGACATTAGGTATGGTGGGAT
CAGGGCTGCTATTGCTGATGGTGGCAGTTATACTCTGGTGGCAACGAAGA
GAATGA
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protein sequence of NO29G00980.1

>NO29G00980.1-protein ID=NO29G00980.1-protein|Name=NO29G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MFVNVIRQQSMRTVVIDEGFKTRLLRTIAQRKPVEVGALLGRQLPDGSRD
FLTLAVALPLPQGKKRIKNEKQGEQEDQKEEGVAWRSLADVSRQTVEAHV
KRLNRHIIAGLSICGLYAVSSDGGKQAIDVLQRLWPNPSSSSCSSSCSSS
TTPPLTCSSRELTWLHMCTQSSQLTCRVGPSKGEVGAAIVLYQEGRGIGG
EGGGGIKYPLVIWHSFLNVNFKVVLNVPFFEEEEEEGEKKEEDSEGSRRE
GRRKEGRETFFRGLWKAAQAEGKRFRKALAFPSIPLPPPTVATADAAASA
SCKGGAPDKEEAGGSLIPPSPSSSTSSPSSSLSSSLGRRLDFYTLFDSED
EDDEEEQAAVIAAAQSENLRPIQIKFPRRVLLSSPPSSSFSSSSTVPLVD
YVSPGSLKEGGKEGQEEAWIRLRNIMAKAEGEKAGAVAVPVGGVSSTSSS
FSSSPFRLLVLEQQAPALAPSVLLRVNNNLDADKTTAAKPAAKAAAVPAA
PVAAPVATLLTLGMVGSGLLLLMVAVILWWQRRE*
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Synonyms
Publications