NO29G00840, NO29G00840 (gene) Nannochloropsis oceanica

Overview
NameNO29G00840
Unique NameNO29G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr29:304975..306432 -

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Properties
Property NameValue
DescriptionProtein rolling stone
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:304975..306432 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO29G00840 vs. NCBI_GenBank
Match: EWM21306.1 (hypothetical protein Naga_100350g5 [Nannochloropsis gaditana])

HSP 1 Score: 378.6 bits (971), Expect = 1.700e-101
Identity = 186/289 (64.36%), Postives = 208/289 (71.97%), Query Frame = 0
Query:    1 MGFFTDAIEDIVQEPWLIPSHPRREDFLYFRGSSKKSISTYRCVIASYWTFWVLLSILGSVGVPIPAPLFGVMDNDMDIKWLIFLTNWSMLLLGTYLWTAYAASRSLPPXXXXXXXXXXXHHRRRLYQTVWVLRNCTAVAALVVSLLFWTILFPEIKKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNYKHPGEAAGLXXXXXXXXXPAVHTMLYVYNRWLR----RTEYWHGPQVGSRITVR-DRMPLLP 285
            MG F + I DI +EPWLIP  P REDFL+FRGSS +SIS YRC+IASYW+ W+L+SILGSVGVP+P  LFG MDNDM  KWLIFLTNWSM+LLGTYLWTA+AAS                 H  RL QTVWVLRNCTAVAALVVSLLFW +LFP IKKTSW DVHCHA+NS +VLLDLT+THVPYYFKHGWM   YLV YLLFS+VYW  GGTDPEGD YIY PL+Y HPG A GL         P VH  LY Y R L     +  +  G ++G R   R DR+PLLP
Sbjct:    1 MGIFNNIINDIAEEPWLIPESPEREDFLFFRGSSHRSISMYRCLIASYWSIWILISILGSVGVPLPDALFGSMDNDMGEKWLIFLTNWSMVLLGTYLWTAFAAS-------------LYTDHSPRLLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYDHPGAATGLVLAVVFLVVPFVHVSLYAYTRCLSQGLCQACFGEGGKMGRREGARTDRLPLLP 276          
BLAST of NO29G00840 vs. NCBI_GenBank
Match: EWM28341.1 (hypothetical protein Naga_100367g4 [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 1.800e-18
Identity = 73/253 (28.85%), Postives = 113/253 (44.66%), Query Frame = 0
Query:   14 EPWLIP--SHPRREDFLYFRGSSKKSIS------TYRCVIASYWTFWVLLSILGSVGVPIPAPLFGVMDNDMDIKWLIFLTNWSMLLLGTYLWTAYAASRSLPPXXXXXXXXXXXHHRRRLYQTVWVLRNCTAVAALVVSLLFWTILFPEIKKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNYKHPGEAAGLXXXXXXXXXPAVHTMLYVYNRW 259
            EPW  P  SH       +   S K  +S      TYR V   YW+FWVL S LG  G P                W +++TNW+  ++G Y W A+ A   L P                L +  W L +     +++V L++W + FP +   S + VH H +N++++++DL +   PY+ KH      ++  Y++F+ VYW + G      + +Y PL+Y HP  AA           P VH + +   RW
Sbjct:   13 EPWGYPARSHFAVTHLKFPVASGKYGLSLYHIALTYRLVFLLYWSFWVLYSALGGDGPPTS-------------WWCVYVTNWTAAVMGGYAWGAFLA--ILIPRAFF------------LDRATWFLHDIATPLSIMVCLMYW-LAFP-VPPISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAG------NVVYTPLDYTHPFLAATALVGTFFIIFPIVHLLCW---RW 227          
BLAST of NO29G00840 vs. NCBI_GenBank
Match: XP_001627037.1 (predicted protein [Nematostella vectensis] >EDO34937.1 predicted protein [Nematostella vectensis])

HSP 1 Score: 92.4 bits (228), Expect = 2.400e-15
Identity = 60/222 (27.03%), Postives = 103/222 (46.40%), Query Frame = 0
Query:   41 YRCVIASYWTFWVLLSILGSVGVPIPAPLFGVMDNDMDIKWLIFLTNWSMLLLGTY--------LWTAYAASRSLPPXXXXXXXXXXXHHRRRLYQTVWVLRNCTAVAALVVSLLFWTILFPEIKKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNYK-HPGEAAGLXXXXXXXXXPAVHTMLY 254
            +R ++A+Y T W++ S              G  + +   KW I+LTNW  LL   Y        LW      ++              HH       +W+L N  A  A+++S+++W  +   I     +DV  HA+N+V ++L+L ++ +P    H    L + + Y++F++VYW +GGT+     YIY  ++YK  PG A G+         P VH++ +
Sbjct:    4 FRFLVAAYNTGWLIYS--------------GFHEANGKTKWFIYLTNWGYLLETVYFIYASAVTLWFHIREKKNKDQSDFNFSDLMRYHH-----SLMWILFNIAADTAVLISIIYWGWMVGPI---DGLDVSTHALNTVFMILELVLSKLPIRLLHCIYPLVFGLCYMIFTVVYWAAGGTNANNKPYIYSIVDYKDSPGMAVGILLGALLVLLPIVHSVFF 203          
BLAST of NO29G00840 vs. NCBI_GenBank
Match: EAT43152.1 (AAEL005379-PA [Aedes aegypti])

HSP 1 Score: 91.7 bits (226), Expect = 4.100e-15
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 0
Query:   80 KWLIFLTNWSMLLLGTYLW-TAYAASRSLPPXXXXXXXXXXXHHRRRLYQTVWVLRNCTAVAALVVSLLFWTILF-PEIKKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNYKHPGEA 234
            KW I+LT+W+++      W  A   ++ L                 RL+   WV+     V + +V++++WT ++ PEI +   V++  H +NSVI+L+DLT+   P    H +      V Y LFS++Y+L+GGTD   +  IY  L+++ PG++
Sbjct:   58 KWWIYLTHWALIACALQAWLAAIIVTKGLMIDRNEFEWNIHVARESRLHAVYWVVYTIATVYSFIVTIVYWTFVYDPEIHRVDAVNLMVHVLNSVIMLIDLTIVGHPIRLNHAYWTTGIGVLYALFSVIYYLAGGTDRHNESSIYKMLDWQKPGKS 213          
BLAST of NO29G00840 vs. NCBI_GenBank
Match: XP_013088056.1 (PREDICTED: protein rolling stone-like [Biomphalaria glabrata])

HSP 1 Score: 91.7 bits (226), Expect = 4.100e-15
Identity = 41/105 (39.05%), Postives = 77/105 (73.33%), Query Frame = 0
Query:  131 WVLRNCTAVAALVVSLLFWTILFPEIKKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNY-KHPGEAA 235
            WVL+N + V++L+V+++FW +++    +T +V ++ H +NSV+VL D+ ++  P   +H ++ L++ V+Y+LF+ +YW++GGT+ +G HYIY  L+Y + PG+AA
Sbjct:  156 WVLQNISNVSSLLVTVMFWALVYTGNSQT-YVSINSHIMNSVLVLCDIMISRAPCRLQHLYIPLSFNVSYVLFTFIYWIAGGTNNQGQHYIYKMLDYTQAPGKAA 259          
BLAST of NO29G00840 vs. NCBI_GenBank
Match: XP_021700554.1 (protein rolling stone isoform X1 [Aedes aegypti] >XP_021700555.1 protein rolling stone isoform X1 [Aedes aegypti])

HSP 1 Score: 91.7 bits (226), Expect = 4.100e-15
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 0
Query:   80 KWLIFLTNWSMLLLGTYLW-TAYAASRSLPPXXXXXXXXXXXHHRRRLYQTVWVLRNCTAVAALVVSLLFWTILF-PEIKKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNYKHPGEA 234
            KW I+LT+W+++      W  A   ++ L                 RL+   WV+     V + +V++++WT ++ PEI +   V++  H +NSVI+L+DLT+   P    H +      V Y LFS++Y+L+GGTD   +  IY  L+++ PG++
Sbjct:   75 KWWIYLTHWALIACALQAWLAAIIVTKGLMIDRNEFEWNIHVARESRLHAVYWVVYTIATVYSFIVTIVYWTFVYDPEIHRVDAVNLMVHVLNSVIMLIDLTIVGHPIRLNHAYWTTGIGVLYALFSVIYYLAGGTDRHNESSIYKMLDWQKPGKS 230          
BLAST of NO29G00840 vs. NCBI_GenBank
Match: XP_019529002.1 (PREDICTED: protein rolling stone-like [Aedes albopictus] >XP_019529003.1 PREDICTED: protein rolling stone-like [Aedes albopictus] >XP_019529004.1 PREDICTED: protein rolling stone-like [Aedes albopictus] >XP_019529108.1 PREDICTED: protein rolling stone-like [Aedes albopictus] >XP_019529109.1 PREDICTED: protein rolling stone-like [Aedes albopictus])

HSP 1 Score: 91.3 bits (225), Expect = 5.300e-15
Identity = 47/156 (30.13%), Postives = 83/156 (53.21%), Query Frame = 0
Query:   80 KWLIFLTNWSMLLLGTYLW-TAYAASRSLPPXXXXXXXXXXXHHRRRLYQTVWVLRNCTAVAALVVSLLFWTILF-PEIKKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNYKHPGEA 234
            KW I+LT+W+++      W  A   ++ L                 RL+   WV+     V + +V++++WT ++ PE+ +   V++  H +NSVI+L+DLT+   P    H +      V Y LFS++Y+L+GGTD   +  IY  L+++ PG++
Sbjct:   75 KWWIYLTHWALIACALQAWLAAIIVTKGLMIDRNEFEWNIHVARESRLHAVYWVVYTIATVYSFIVTIVYWTFVYDPEVHRVDAVNLMVHVLNSVIMLIDLTIVGHPIRLNHAYWTTGIGVAYALFSVIYYLAGGTDRHNESSIYRMLDWQKPGKS 230          
BLAST of NO29G00840 vs. NCBI_GenBank
Match: XP_003726784.1 (PREDICTED: protein rolling stone [Strongylocentrotus purpuratus])

HSP 1 Score: 90.9 bits (224), Expect = 7.000e-15
Identity = 59/197 (29.95%), Postives = 104/197 (52.79%), Query Frame = 0
Query:   39 STYRCVIASYWTFWVLLSILGSVGVPIPAPLFGVMDND-MDIKWLIFLTNWSMLLLGTYLWTAYAASRSLPPXXXXXXXXXXXHHRRRLYQTVWVLRNCTAVAALVVSLLFWTILFPEI--KKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNY-KHPG 232
            +TYR ++A Y+  +++               FGV   + + +K+LI+LT+W+ +++  Y   A   + +                R+   Q  W L N +A  +L+V++++WT L P +  K   ++DV  H + +VI L+D+ +T V   F H      YL  YLLF+++YW +GGTDP G+ +IYP +++  +PG
Sbjct:   41 ATYRLILALYFFAFLI--------------FFGVSSAEFLGVKFLIYLTDWTYIVVTLYAMVACFNTLTTKSCYCIGGCIGKGIFRK---QVQWFLLNISAAVSLIVTVVYWTALRPLMSEKLPVYLDVTIHLLPAVICLVDILLTTVIVRFVHVVYPFAYLFFYLLFAVIYWAAGGTDPAGNPFIYPIIDFGNYPG 220          
BLAST of NO29G00840 vs. NCBI_GenBank
Match: XP_013419757.1 (protein rolling stone [Lingula anatina])

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-14
Identity = 72/240 (30.00%), Postives = 108/240 (45.00%), Query Frame = 0
Query:   20 SHPRREDFLYFRGSSKKSISTYRCVIASYWTFWVLLSILGSVGVPIPAPLFGVMDNDMDIKWLIFLTNWSMLLL--GTYLWTAYAASRSLPPXXXXXXXXXXXHHRRRLYQTVWVLRNCTAVAALVVSLLFWTILFPEI----KKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNYKHPGEAAGLXXXXXXXXXPAVHTMLY 254
            SH   + F+  +G    +   YR + A +   W++LS     GV IP   +    N   IKW I+LTNWS L+L     +  A A S  +             H      +  WV+ N ++ AA+VV+ L+W +  P       +  ++DV  H  N++ VL D+ +T  P    H      Y + YL+FS+VY +  GT+     YIYP L++  PG AA           P V  +LY
Sbjct:   22 SHENPQLFVTAQGGFGIAYVIYRVIWALFHVTWIILS-----GV-IPYSWYSSESN--RIKWFIYLTNWSYLILTVSAIIQAAVAISHYV---KRRKHDGVSNHAMTWYLKMAWVIYNISSNAAIVVAALYWGLRIPPKLAAGGEIHYMDVGTHLGNAIYVLSDIFITATPVRIYHFLHSSLYAIVYLIFSVVYDVLKGTNAVEGSYIYPQLDWDVPGTAAIYAVLVALVAVPLVQCVLY 250          
BLAST of NO29G00840 vs. NCBI_GenBank
Match: XP_013393891.1 (protein rolling stone-like [Lingula anatina])

HSP 1 Score: 89.4 bits (220), Expect = 2.000e-14
Identity = 70/239 (29.29%), Postives = 110/239 (46.03%), Query Frame = 0
Query:   20 SHPRREDFLYFRGSSKKSISTYRCVIASYWTFWVLLSILGSVGVPIPAPLFGVMDNDMDIKWLIFLTNWSMLLLGTYLWTAYAASRSLPPXXXXXXXXXXXHHRRRLY-QTVWVLRNCTAVAALVVSLLFWTILFPEI----KKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTYLLFSIVYWLSGGTDPEGDHYIYPPLNYKHPGEAAGLXXXXXXXXXPAVHTMLY 254
            +H   + F+  +G    +   YR + A +   W++LS     GV IP   +    N   IKW I+LTNWS L+L   +     A+ ++             +H    Y +  WV+ N ++ AA+VV+ L+W +  P       +  ++DV  H  N++ VL D+ +T  P    H      Y + YL+FS+VY +  GT+     YIYP L++  PG AA           P V  +LY
Sbjct:   22 NHENPQLFVTAQGGFGIAYVIYRVLWALFHVTWIILS-----GV-IPYSWYSSESN--RIKWFIYLTNWSYLIL--TVSAIIQAAVAINHYVKRRKHDGVSNHAMTWYLKMAWVIYNISSNAAIVVAALYWGLRIPPKLAAGGEIHYIDVGTHLGNAIYVLSDIFITATPVRIYHFLHSSLYAIVYLIFSVVYDVLNGTNAVEGSYIYPQLDWDVPGTAAIYAVLVALVAVPLVQCVLY 250          
The following BLAST results are available for this feature:
BLAST of NO29G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21306.11.700e-10164.36hypothetical protein Naga_100350g5 [Nannochloropsi... [more]
EWM28341.11.800e-1828.85hypothetical protein Naga_100367g4 [Nannochloropsi... [more]
XP_001627037.12.400e-1527.03predicted protein [Nematostella vectensis] >EDO349... [more]
EAT43152.14.100e-1530.77AAEL005379-PA [Aedes aegypti][more]
XP_013088056.14.100e-1539.05PREDICTED: protein rolling stone-like [Biomphalari... [more]
XP_021700554.14.100e-1530.77protein rolling stone isoform X1 [Aedes aegypti] >... [more]
XP_019529002.15.300e-1530.13PREDICTED: protein rolling stone-like [Aedes albop... [more]
XP_003726784.17.000e-1529.95PREDICTED: protein rolling stone [Strongylocentrot... [more]
XP_013419757.11.200e-1430.00protein rolling stone [Lingula anatina][more]
XP_013393891.12.000e-1429.29protein rolling stone-like [Lingula anatina][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005204NSK005204Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00840.1NO29G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601344gene_8256Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100350g5gene9117Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00840.1NO29G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00840 ID=NO29G00840|Name=NO29G00840|organism=Nannochloropsis oceanica|type=gene|length=1458bp
ACACACAGACAGGACACGCAGGTCCAGCAGATCATCCTCAACGTTGTCGG
TCGTCGTCACGCGCCCCCTTTTCGTTTCCTCTCTGTCTGCGAGTCCCAGC
AACGATAGAACAAGCACAAGTCAAGGGACATCTCCGCCCATTTCCATCCT
TGACACACAACAACCTTAGCGGCCAGAGTGATCGGTAACAAGCATGGGCT
TCTTTACGGACGCAATAGAAGACATTGTACAGGAGCCGTGGCTCATCCCA
AGCCACCCCCGCAGGGAGGACTTCCTCTACTTCCGAGGGAGCAGCAAAAA
GTCGATTTCTACGTATCGCTGCGTGATTGCCTCGTACTGGACGTTTTGGG
TCTTACTTAGCATTTTGGGATCAGgtatgtcttgatggagagattgtgtg
tatgggtatggagcttgggtggccaaggtacgactgaagaggcagtacct
gcgtgtgcatgacggcaggactgacatgtaaggccttcgctttgtctgtc
tcagctgctttgaacatgatggacaacctttatacataaactttccacgt
cggatctttttggcccactgatgcaagctctctcccttccttcctcacac
cctccatcccttccagTGGGCGTCCCCATTCCTGCTCCCCTCTTCGGTGT
GATGGATAACGATATGGACATCAAATGGCTCATCTTCCTTACCAACTGGT
CTATGCTCCTCCTCGGCACTTACCTCTGGACCGCCTATGCCGCTTCTCGC
TCCCTCCCGCCCTCCATCCCTCCCACCCCTCCCTCCTCACCCTCCCACCA
TCGTCGCCGGCTTTACCAGACTGTGTGGGTGTTGCGGAATTGTACGGCTG
TTGCGGCCCTTGTGGTGTCTCTTCTGTTCTGGACGATATTGTTTCCCGAG
ATAAAGAAAACGAGCTGGGTGGACGTGCATTGTCACGCCATAAATAGCGT
GATTGTTCTCCTGGATTTGACCGTGACTCATGTGCCGTACTATTTTAAGC
ATGGGTGGATGGGTCTCACGTACCTTGTCACCTACCTCTTATTTTCCATC
GTGTACTGGCTTAGCGGGGGGACTGATCCCGAGGGCGATCATTACATCTA
TCCACCTTTGAATTACAAGCACCCGGGTGAGGCCGCCGGCCTGGTGGTGG
TAGTGGTGGTGGTGGTTGTCCCTGCCGTTCACACCATGTTGTACGTTTAC
AACCGTTGGTTGCGTCGAACCGAATACTGGCATGGCCCACAAGTAGGGAG
TAGAATCACAGTGCGGGACCGCATGCCACTCCTGCCGAACTAAAAATAAT
GATCAAATGGTATAATGATGTAAATGCGTGTGGAGGTACCTAGGCATTGA
AGAAGTCAACGGAAAGATTTGTCACATAGTTGATGAAATAAATGTCTCAC
AATGTGGTCGGGAGGGTTCAAGGCCAACCAAAGTCTGCTCTATCGAATGA
AATAGAGC
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protein sequence of NO29G00840.1

>NO29G00840.1-protein ID=NO29G00840.1-protein|Name=NO29G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MGFFTDAIEDIVQEPWLIPSHPRREDFLYFRGSSKKSISTYRCVIASYWT
FWVLLSILGSVGVPIPAPLFGVMDNDMDIKWLIFLTNWSMLLLGTYLWTA
YAASRSLPPSIPPTPPSSPSHHRRRLYQTVWVLRNCTAVAALVVSLLFWT
ILFPEIKKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTY
LLFSIVYWLSGGTDPEGDHYIYPPLNYKHPGEAAGLVVVVVVVVVPAVHT
MLYVYNRWLRRTEYWHGPQVGSRITVRDRMPLLPN*
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Synonyms
Publications