NO29G00830, NO29G00830 (gene) Nannochloropsis oceanica

Overview
NameNO29G00830
Unique NameNO29G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2788
Alignment locationchr29:302187..304974 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:302187..304974 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO29G00830 vs. NCBI_GenBank
Match: EWM29475.1 (hypothetical protein Naga_100128g9 [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 9.900e-17
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 0
Query:  150 YLALLSRQHPFPFCAWQVIFDPRLFTPVLLDTNSVYWLQALHFRTR-NDVFRITGTFPLVRYFSFQSYDSAGKPLSSLPDYQLQPQSSGGINPFVTLSSSFHINNTSGSSSSSDCLGQFEIYVTADGKHGYPNELAALRD 289
            Y  L      +PFCAW    D  ++TP+LLD N+VY  Q L F    + V++I+ +FP V YFS+++Y   G PL+SLPD ++ P  S G NP+                ++ +  G +EIYVT DG  G+PNE+  L +
Sbjct:    5 YADLAIASSEYPFCAWDATTDESIYTPLLLDPNAVYQPQLLSFAAHPHRVYKISASFPRVVYFSYETYSLRGHPLTSLPDLRIDP--SWGKNPY-------------REETTEEGAGTYEIYVTRDGNKGWPNEVRGLSE 129          
BLAST of NO29G00830 vs. NCBI_GenBank
Match: EWM21339.1 (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana])

HSP 1 Score: 86.3 bits (212), Expect = 5.100e-13
Identity = 56/148 (37.84%), Postives = 79/148 (53.38%), Query Frame = 0
Query:  197 DVFRITGTFPLVRYFSFQSYDSAGKPLSSLPDYQLQPQSSGGINPFVTLSSSFHINNTSGSSSSSDCLGQFEIYVTADGKHGYPNELAALRDPSLFISTSTILYRLYGVDPSVLEEGERGERDGGENEEVRTRHRWELWGFVEPPVVE 345
            +V+RI G FP VRYFSF  YD++ + +S+L D  ++P  S G NPF            +    + D +G +EIYV+ DG  GYPNE+AALR P      + + +RL  +DP        GE   G+N E         WG+V+ P+VE
Sbjct:  157 EVYRIRGKFPYVRYFSFTVYDASLQSISTLHDTDIRP--SSGKNPF------------NDIEVTEDNMGTYEIYVSKDGSKGYPNEMAALR-PDSTSPYALLAFRLQLLDP------RAGEDRSGKNRE---------WGYVDMPLVE 274          
BLAST of NO29G00830 vs. NCBI_GenBank
Match: EWM22223.1 (hypothetical protein Naga_100312g6 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-10
Identity = 67/217 (30.88%), Postives = 99/217 (45.62%), Query Frame = 0
Query:  136 AVGKLSGLDIAKEIYL-----ALLSRQHPFPF-CAWQVIFDPRLFTPVLLDTNSVYW-LQALHFRTRNDVFRITGTFPLVRYFSFQSYDSAG-KPLSSLPDYQLQPQSSGGINPFVTLSSSFHINNTSGSSSSSDCLGQFEIYVTADGKHGYPNELAALRDPSLFISTSTILYRLYGVDPSVLEEGERGERDGGENEEVRTRHRWELWGFVEPPVVE 345
            AV +L   D  K ++L     AL        F CAWQ       F     D  +VY  L     +   DV RI G +P VRYFS+QSYD     P++S+ DY++  +S  G+NPF T  +      T G        G+++++VT +G  GYPNEL  +   S   + + +L R+Y  D                    ++  + ++WG V PPVV+
Sbjct:   11 AVNQLDMTDAQKAVFLSYTSYALAGLNASIEFNCAWQASVGLN-FNIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYDPKSLDPVASVRDYEI--KSVRGVNPFATPGT------TLGDK------GKYQVHVTLNGDQGYPNELPTIASGS-NATGAFVLLRVYAYDK-------------------QSPDKTDIWGAVAPPVVK 192          
BLAST of NO29G00830 vs. NCBI_GenBank
Match: XP_005854425.1 (hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526] >EKU21938.1 hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 78.2 bits (191), Expect = 1.400e-10
Identity = 69/226 (30.53%), Postives = 101/226 (44.69%), Query Frame = 0
Query:  127 ASVTLALAKAVGKLSGLDIAKEIYL-----ALLSRQHPFPF-CAWQVIFDPRLFTPVLLDTNSVYW-LQALHFRTRNDVFRITGTFPLVRYFSFQSYDSAG-KPLSSLPDYQLQPQSSGGINPFVTLSSSFHINNTSGSSSSSDCLGQFEIYVTADGKHGYPNELAALRDPSLFISTSTILYRLYGVDPSVLEEGERGERDGGENEEVRTRHRWELWGFVEPPVVE 345
            A V      AV +L   D  K ++L     AL        F CAWQ       F     D  +VY  L     +   DV RI G +P VRYFS+QSYD     P++S+ DY++  +S  G+NPF T  +      T G        G+++++VT +G  GYPNEL  +   S   + + +L R+Y  D                    ++  + ++WG V PPVV+
Sbjct:  148 AQVNTMANVAVNQLDMTDAQKAVFLSYTSYALAGLNASIEFNCAWQASVGLN-FNIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYDPKSLDPVASVRDYEI--KSVRGVNPFATPGT------TLGDK------GKYQVHVTLNGDQGYPNELPTIASGS-NATGAFVLLRVYAYDK-------------------QSPDKTDIWGAVAPPVVK 338          
BLAST of NO29G00830 vs. NCBI_GenBank
Match: EWM21022.1 (hypothetical protein Naga_100271g2 [Nannochloropsis gaditana])

HSP 1 Score: 77.4 bits (189), Expect = 2.400e-10
Identity = 52/171 (30.41%), Postives = 75/171 (43.86%), Query Frame = 0
Query:  179 LDTNSVYWLQALHFRTRNDVFRITGTFPLVRYFSFQSYDSAGKPLSSLPDYQLQPQSSGGINPFVTLSSSFHINNTSGSSSSSDCLGQFEIYVTADGKHGYPNELAALRDPSLFISTSTILYRLYGVDPSVLEEGERGERDGGENEEVRTRHRWELWGFVEPPVVERMVVG 350
            +D NS   +        ND+  I G+FP  RYFSFQ+YD    P+  L D  + P  +G  NP+ T           G+   +   G++ +Y+T DGK G+ NEL   +          +++R+YGVDPS          D G             WGFV P  V   ++G
Sbjct:  124 VDQNSAAHIMIFPAFGPNDLVMIEGSFPAARYFSFQTYDGNFSPVGFLRDAHIHPLGTGR-NPYFTPPPD---GTEEGAGEEAREEGRYRLYLTKDGKRGFRNELGVAKSNFSLGGLVLVIFRIYGVDPSA------NATDPG----------LAPWGFVPPIQVRSKLLG 274          
BLAST of NO29G00830 vs. NCBI_GenBank
Match: EWM25888.1 (hypothetical protein Naga_100054g2 [Nannochloropsis gaditana])

HSP 1 Score: 70.9 bits (172), Expect = 2.200e-8
Identity = 110/481 (22.87%), Postives = 178/481 (37.01%), Query Frame = 0
Query:  161 PFCAWQVIFDPRLFTPVLLDTNSVYWLQALHFRTRNDVFRITGTFPLVRYFSFQSYDSAGKPLS-SLPDYQLQPQSSGGINPFVTLSSSFHINNTSGSSSSSDCLGQFEIYVTADGKHGYPNELAALRD---PSLFISTSTILYRLYGVDPSVLEEGERGERDGGENEEVRTRHRWEL---WGFVEPPVVERMVVGKRKXXXXXXXGGGRKEDMIMGMEGEEDGGPTRAVMTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSFALPSLPPSSWEEWELLPPCSQLDLLRVAQEFRTAEKKYLFP------LPAQDEVCGLFE---------KAGAGREEGRVVPSMFPYGHLESRGVHDYVVYTNKDS-NYLYWCDATHR-----MGDGDADKFVVVLRGRLPITPTGLFVGEGEEGKEGGPRIADVGEYEARYVSVSTVENMAPSDTYQSVYDAELKRYFLK 614
            P+CAW+ + +   +     D+ S+Y +  ++ R   ++   + + P  RYFSFQSY       S SL D  + P S  G N +  L+++      +G+       G +E+ VT+ G HG+ NEL AL D      FI    + +R+Y      L        D GE    R R+  E    WG+  PP V    + +R        GGG+ E + +     + G     V                                                 S   P+LP      +    P        + Q+F   + KYLF       +P + +  G +          + G  REE R   +         +  H   V  +K S +     +   R      G G+  +    + GRLP T   L+           P IA+  +Y+ RYVS+S+V    P   YQ+++DA++  ++L+
Sbjct:   46 PYCAWRFVSNFASWNVAFPDSTSIYHVSLMYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIP-SGNGPNCYTNLTAAM-----AGAKQ-----GGYEVVVTSHGDHGHANELRALADDRASGYFI----LFFRIYQDRVGSLPPMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRR-------VGGGKFETLPLCGYRRKHGIVYNDVTPPV-----------------------------------------IACPSVRAPNLP------FNFFLPSPDY----IKQKFANKDAKYLFSCAEAPWVPEKSKGAGGWSFWKGQRSPVEEGREREENREGAT--------KKETHRKPVARDKPSEDGEVEGEGRKRAPEAGRGSGEGRELWARVTGRLPRTANSLY---------EPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHYLR 436          
BLAST of NO29G00830 vs. NCBI_GenBank
Match: EWM25941.1 (hypothetical protein Naga_100469g5 [Nannochloropsis gaditana])

HSP 1 Score: 69.3 bits (168), Expect = 6.400e-8
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  154 LSRQHPFPFCAWQVIFDPRLFTPVLLDTNSVYWLQALHFRTRNDVFRITGTFPLVRYFSFQSYDS--AGKPLSSLPDYQLQPQSSGGINPFVTLSSSFHINNTSGSSSSSDCLGQFEIYVTADGKHGYPNELAALRDPSLFISTSTILYRLYGVDP 308
            ++R + +P C W   +        L+D N+VYW Q +     N  +++ G FP   YFS+Q Y S  +  P   + D+ ++P    G NPF            S   ++ + +G +E+Y+T  G+ GY NE   LR P+  I  + ++ R+Y  DP
Sbjct:  117 VARGYSWPHCYWHAKYAINYTHFGLIDPNAVYWGQLVRGSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKP--LWGTNPF------------SNPDATPEDMGGYEVYLTPSGEEGYVNE---LRLPNATI--NQLILRMYKPDP 253          
The following BLAST results are available for this feature:
BLAST of NO29G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Position :
0
Zoom :
x 1
200400600800100012001400160018002000220024002600Expect = 1.10e-10 / Id = 30.88Expect = 1.40e-10 / Id = 30.53Expect = 2.40e-10 / Id = 30.41Expect = 2.20e-8 / Id = 22.87SequenceEWM29475.1EWM21339.1EWM22223.1XP_005854425.1EWM21022.1EWM25888.1EWM25941.1
Match NameE-valueIdentityDescription
EWM29475.19.900e-1737.86hypothetical protein Naga_100128g9 [Nannochloropsi... [more]
EWM21339.15.100e-1337.84hypothetical protein Naga_100075g21 [Nannochlorops... [more]
EWM22223.11.100e-1030.88hypothetical protein Naga_100312g6 [Nannochloropsi... [more]
XP_005854425.11.400e-1030.53hypothetical protein NGA_0235800 [Nannochloropsis ... [more]
EWM21022.12.400e-1030.41hypothetical protein Naga_100271g2 [Nannochloropsi... [more]
EWM25888.12.200e-822.87hypothetical protein Naga_100054g2 [Nannochloropsi... [more]
EWM25941.16.400e-829.49hypothetical protein Naga_100469g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005203NSK005203Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00830.1NO29G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00830.1NO29G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00830 ID=NO29G00830|Name=NO29G00830|organism=Nannochloropsis oceanica|type=gene|length=2788bp
AGCAAACACAGCTCCTGCGTGTGGGGATGCACAGACGTCTCCTCTCGCTC
GCCTTGTGGCTCTTGCTACACAAGAGCAGCACCGCTTTACCCCCAGACAA
AGCTACACACGACCATACCTCGTCCAAGCAATTATCTTCCCTCAGGCCAG
CCGCTGCCGTAACCAGTGCACCCACCAAACCAGCACCAGCATCAGTTCCA
CCCTTGGTGCGGACAGCAGCAGCAGCGACAGCAGCAGCAGCAACAACAGT
AGCCGACGAGGCCACCGCCACCGCAGAAAAAGATATATACTGGAATAAGG
TTACCGACAATTTTCGGTCGGCAACAACCAAGCGACCCTCAACCTTCTTC
AACGACGACGAGGAGGAGGAGGAGGAGAACGACGACGACCTTGGAGCAGC
TACTGCTTCGGTGACCCTCGCCTTGGCCAAAGCCGTGGGTAAACTCAGCG
GACTGGACATTGCAAAAGAAATTTATTTAGCTCTGTTGAGTCGACAGCAT
CCTTTCCCTTTTTGTGCGTGGCAAGTGATATTTGACCCGCGACTATTCAC
ACCGGTGCTGTTGGATACCAACTCGGTTTATTGGCTCCAGGCCTTGCATT
TCCGGACAAGGAACGACGTGTTTCGGATAACGGGTACTTTCCCCTTGGTT
CGATACTTTAGTTTTCAGgtgagaagaggggaggaagaagaacgactgta
tatacacgtggagtgtctcttctcgtcccaccattcactcactccctccc
tccttttttccctctctcccttacagAGCTACGACTCCGCAGGCAAGCCG
CTGAGTAGCCTCCCGGACTACCAACTCCAGCCTCAATCTAGCGGGGGTAT
CAATCCCTTCGTCACTCTTTCCTCCTCGTTTCACATCAACAACACCAGCG
GCAGCAGCAGCAGCAGTGATTGTTTGGGACAATTTGAGATCTACGTGACT
GCAGACGGGAAACACGGCTATCCGAACGAGCTTGCTGCCTTGCGCGACCC
TTCTTTGTTCATCAGTACTAGTACTATTCTGTATCGCTTGTACGGTGTGG
ACCCTTCGGTATTAGAGGAGGGCGAGCGAGGAGAGAGGGATGGAGGGGAG
AATGAAGAGGTGAGGACGAGGCATCGATGGGAGCTTTGGGGCTTTGTGGA
GCCGCCGGTGGTGGAACGGATGGTGGTAGGGAAGAGGAAAAGGAAGAAGA
GAGGGAGGGAGGGGGGCGGAAGGAAGGAGGATATGATCATGGGGATGGAG
GGGGAGGAGGATGGAGGGCCGACAAGAGCAGTGATGACAGCAACAGGAGC
AACAGCAACATCAGTGTCACCATCCCTCTCTTCTTCCTCCTCGCCCTCCT
CCTTTTCTCCGTCCTCCTCTCCCTCCATGTTATCCCCCTTCCCTTCCTTC
ACGAGCACCATGACAAGCACCACCCTCTCTTCCTTCGCCCTTCCCTCCCT
CCCTCCCTCTTCGTGGGAAGAATGGGAGCTCCTCCCCCCCTGCTCTCAAT
TGGATCTGTTGAGGGTCGCTCAAGAATTCAGGACAGCGGAAAAGAAATAC
CTTTTTCCTCTCCCTGCCCAAGACGAGGTATGTGGGCTCTTTGAGAAAGC
AGGGGCAGGGCGGGAGGAAGGGCGGGTGGTGCCGAGTATGTTTCCTTATG
GGCATTTGGAGAGTAGGGGAGTGCACGATTATGTGGTTTATACAAACAAG
GACTCGAATTATCTGTATTGGTGCGATGCAACTCATCGGATGGGGGATGG
GGACGCCGATAAATTCGTGGTAGTGCTCAGGGGGAGGTTACCGATAACGC
CGACGGGCCTCTTTGTGGGGGAGGGGGAGGAAGGGAAAGAGGGAGGGCCG
AGAATAGCGGATGTGGGGGAGTATGAAGCGAGATATGTAAGTGTAAGCAC
GGTGGAAAATATGGCGCCAAGCGATACGTACCAATCGGTCTATGACGCTG
AGTTGAAGAGATACTTTTTGAAATTTGCAGTGGGGGCAGGGAGGGAGGAG
GGAAGGGAAGCAGGAGGAGGGGGATGGGATCGACGGTATACAATTGTTGC
GGCCATAAATGAGTCGGTGCTCTATAGTTGTGGGAATGGTCAACTTCCTT
ACTTCTTGCAGTCCTCTTCCTCTTCTTCCTTTTCTTTCTCCTCCTCCTCC
TCCTCCTCCTCAACCTCCTCATCTCAGGACCAGGGCAAGCAAGGCCAGCA
GCAGGAGCACAAGCAACAACACCCTTCCACCTCCTCTTCTTTCCTTTCCT
CCTCCTTCTCCTCCATCCCCTACTACTTTCTGCCCTTCGCTCGCCATGGC
CTTACCCCTCCTCGTCTTCCCGGGCTGGTCTATCGTGAAATCCTCGCCCG
TTACCGTGTCACTGGCCAAGCAGACTTCTCAGCCGCTTACCTTCAAAAAG
TATGCGAGGACGAGGGAGGGAAGACGGCAGGGAAGGGAGGGAAGGAGGGA
GGGATATGTGATGTGGCTGAGACGTTGGTGGAAGTGAGTGACAGGGTGAT
GGGTGAGTATTATCCGCAGATTGAGGTGTATGCGTGTGTGGGGCAAGACG
AAATGGAGAAAGGTCAGGAGGAAGAGCAGGAGGAGAGGGAGGAGGGGAAG
GTGGAGGTGGAGGAGGAGGAAGGGAGAGTAATGAGGCCAAGACGGGGGTC
TGGAGGGCAGTGGAGGAGGCTTAATTAGATTCTCGTGAGGGAACATGGAA
GAGACATGTAGAGAGACGAGTAGGCGTGAGGGCAAGTAGTAAGAGGTGTA
CATAAATTCGAATGTTAACAAATTAAGATATGTATAGT
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protein sequence of NO29G00830.1

>NO29G00830.1-protein ID=NO29G00830.1-protein|Name=NO29G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=848bp
MHRRLLSLALWLLLHKSSTALPPDKATHDHTSSKQLSSLRPAAAVTSAPT
KPAPASVPPLVRTAAAATAAAATTVADEATATAEKDIYWNKVTDNFRSAT
TKRPSTFFNDDEEEEEENDDDLGAATASVTLALAKAVGKLSGLDIAKEIY
LALLSRQHPFPFCAWQVIFDPRLFTPVLLDTNSVYWLQALHFRTRNDVFR
ITGTFPLVRYFSFQSYDSAGKPLSSLPDYQLQPQSSGGINPFVTLSSSFH
INNTSGSSSSSDCLGQFEIYVTADGKHGYPNELAALRDPSLFISTSTILY
RLYGVDPSVLEEGERGERDGGENEEVRTRHRWELWGFVEPPVVERMVVGK
RKRKKRGREGGGRKEDMIMGMEGEEDGGPTRAVMTATGATATSVSPSLSS
SSSPSSFSPSSSPSMLSPFPSFTSTMTSTTLSSFALPSLPPSSWEEWELL
PPCSQLDLLRVAQEFRTAEKKYLFPLPAQDEVCGLFEKAGAGREEGRVVP
SMFPYGHLESRGVHDYVVYTNKDSNYLYWCDATHRMGDGDADKFVVVLRG
RLPITPTGLFVGEGEEGKEGGPRIADVGEYEARYVSVSTVENMAPSDTYQ
SVYDAELKRYFLKFAVGAGREEGREAGGGGWDRRYTIVAAINESVLYSCG
NGQLPYFLQSSSSSSFSFSSSSSSSSTSSSQDQGKQGQQQEHKQQHPSTS
SSFLSSSFSSIPYYFLPFARHGLTPPRLPGLVYREILARYRVTGQADFSA
AYLQKVCEDEGGKTAGKGGKEGGICDVAETLVEVSDRVMGEYYPQIEVYA
CVGQDEMEKGQEEEQEEREEGKVEVEEEEGRVMRPRRGSGGQWRRLN*
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Synonyms
Publications