NO29G00600, NO29G00600 (gene) Nannochloropsis oceanica

Overview
NameNO29G00600
Unique NameNO29G00600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2072
Alignment locationchr29:228495..230566 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:228495..230566 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011333BTB/POZ_fold
IPR011705BACK
Homology
The following BLAST results are available for this feature:
BLAST of NO29G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00600.1NO29G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601223gene_8233Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00600.1NO29G00600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00600 ID=NO29G00600|Name=NO29G00600|organism=Nannochloropsis oceanica|type=gene|length=2072bp
CTTCAAGCCATGACCACCCTGATTTCGATTTAGTCTGACTTTCCATAATC
ACACGACCTGCACAAACGTACGCTTGCTGTTGCTGTTCTGTTGAGGTGTT
CTGCTTCAAAATTTCAGCACCCCTTGCGAAGTTAACCCACCCATAGTCCA
CAACGCACACAGAATCTCACTTACTTCTTTTTCTCTCAAATCCATCAGAT
AACCACACATGAAGAATCAAGGATTCGAACCCAATTTGTTCAAGTTTCTG
TGCCACGTTTTCGACCCCTACCCCATGCCGACCCACGTGCCCTGGCTTTC
GGCACTTCAACAGCGTTTTGTGGAGGGCCTGGACTGCGATGTAATCGTAC
GGGTTAAAATCGAGCAGCCCCCTGCCAAGCGCACGCGTACAGACGACGGC
ACTGATGCGGGTGATGGAGCCGTTCAGCCAATGCAAGAGCAGCAGCGACA
ACGACTCACCGTCGACATTCCTTGCAATTCCAGCATTCTCAAGGTGAGAT
CCGCCTACTTTGACGCGGCGTTCAGCGGCGCCCACGTCAAAAACGAGCAG
AGGAAAGTGAACATTGAGCTACCGGACGTTCAGGCAGTCGAGGATTTCAG
GCTCCTGGTCAAGCTCGCCTGCGGCGTGTCTTATGTCCATGATGGGGGTG
TACGGTTGTCAATGTCTAAGCGGCTGCGTCTTGCCTTTTTAGGCAATACT
TTTGAATTCAAAGAGTGTGTAAAAGAGTGTCTGCAGTCGCTGAGCGAGGA
TGCCTTGGTGCCGGAGGACGCTTGCACTTTGCTTGACAAGATGCCGAAAG
AGCTGTGGGAGCACGAGGCCGCCATGGCCATAAGAATTAAGATTGTAAAG
GTTTTGGTTGAAGAGGTGGATAAGCAAGCGAAGCGGAGAGAGGAGGGCGG
AACTGTCGCGAAGGAGACGGCGGCAGCGGCCGATCTGATGTGCAAGGTGA
CCAAGGCACTAGTGGGGATCATTGACGAACTCGGCCCGCGCGCTGTGCAT
GGAGAGGCTAGTACGCGGAGTAAATATGAAATCTTGGAACAGGTTGGCGG
GGCCCTGTGCATGGTTTTGGGTCCAGTGGATCAGATGTTCGACCAAGGGC
CAGCAAGCAAGCAATTCAAGCACACCCTCTATATCTCACTCCCTCTCTGC
GTCGATATCAAAAGATTGTCTGCAAGGGTCATGAGCATTTTGCTTGGGTC
TGACAAACTCCAGCTGCGGTCCGAGAACGACGCTTACTATCTGCTGTGCG
CATGGCTGTCGCAGTCCAGGCGCATCTCTGACCAGAAAGAGTGTCGAGTT
CTCTTCAGTCGATTTCTCCCGCAGCTCCGCTTTGAGCACATGTCTCAAGA
TTTCCTTAGTGCCTTCGTGAGTGCTTGTCCCTATGCCAACGCGTCGGGGC
TTTTCTCATATATCTTGCGCTACAGCCACGCCCGTCTTACGTTGCCTCGA
AACTTACATGACTCTCATAAGAAGCTTGTCAAGATGGGTAAAAAAGACAG
GAGTATGGGTGATCTCTCATGCACTCTCAAGAGCAAGCTCGGCCTACAGG
ACCTCCTGCCATTGAAGCTGAAGAAGGCTCCTGAGGTGCCAGAGCGCATC
TCCAAATATATTGGTTTGGCGTTAGGCTTCCCGGTAGCTGTGCAGGTGAA
TCGTGAGGCCAAAGGCCTCTTTGGGATCTACGTTTATGTTGGGATGCCCC
TTTGGCAGGGGCTTAGTGTCGACGAAGGGCGTGAGAGCCGCGTTGCGTTC
GAGTGTTGGGTGGAGACGGGGAAGAAGACCAATTATCTCGGGTATCTGTT
TAATGGTAAAGGAAGCCGGGGCTGGCCGGATTTTTTTGGTAAATCGTGGG
AAGATGTTGTCTTCCCAGACAGCCCTTATTTTCCCGACGGCGTGATGACG
ATGGAAGTGACGATGAAACCGATCAAGCGAAACTAGGCGTGCCACGATTT
GGGCTCCAGTTTTCTTTGTATAGCTGACATAAAGTGAAAATGAGAAAGAG
AAATATGTTTGCATGGTAATGTGACGAGTACACATATTTATGTATAGCTC
AAACAAAGTACGAGAAGCAAAA
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protein sequence of NO29G00600.1

>NO29G00600.1-protein ID=NO29G00600.1-protein|Name=NO29G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MKNQGFEPNLFKFLCHVFDPYPMPTHVPWLSALQQRFVEGLDCDVIVRVK
IEQPPAKRTRTDDGTDAGDGAVQPMQEQQRQRLTVDIPCNSSILKVRSAY
FDAAFSGAHVKNEQRKVNIELPDVQAVEDFRLLVKLACGVSYVHDGGVRL
SMSKRLRLAFLGNTFEFKECVKECLQSLSEDALVPEDACTLLDKMPKELW
EHEAAMAIRIKIVKVLVEEVDKQAKRREEGGTVAKETAAAADLMCKVTKA
LVGIIDELGPRAVHGEASTRSKYEILEQVGGALCMVLGPVDQMFDQGPAS
KQFKHTLYISLPLCVDIKRLSARVMSILLGSDKLQLRSENDAYYLLCAWL
SQSRRISDQKECRVLFSRFLPQLRFEHMSQDFLSAFVSACPYANASGLFS
YILRYSHARLTLPRNLHDSHKKLVKMGKKDRSMGDLSCTLKSKLGLQDLL
PLKLKKAPEVPERISKYIGLALGFPVAVQVNREAKGLFGIYVYVGMPLWQ
GLSVDEGRESRVAFECWVETGKKTNYLGYLFNGKGSRGWPDFFGKSWEDV
VFPDSPYFPDGVMTMEVTMKPIKRN*
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Synonyms
Publications