NO29G00560, NO29G00560 (gene) Nannochloropsis oceanica

Overview
NameNO29G00560
Unique NameNO29G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1809
Alignment locationchr29:213605..215413 +

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Properties
Property NameValue
DescriptionCaltractin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:213605..215413 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
BLAST of NO29G00560 vs. NCBI_GenBank
Match: EWM21277.1 (caltractin [Nannochloropsis gaditana])

HSP 1 Score: 332.8 bits (852), Expect = 7.100e-88
Identity = 173/191 (90.58%), Postives = 179/191 (93.72%), Query Frame = 0
Query:    1 MAASNSSSRFRQGAGMGSPLSRRPKAGGKGKGLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDEY 192
            MA+  SSSRFRQGAG+GSP SRRPK G KGKGLDEEELEEIREAFNLFD+DGK TIDVRELKAAFRALGFQVKKAEIRT LQ IDKE AATVTYDEFLDMAAPKVANRDEREEI KVFALFDDDGTG ISFRNLKRVATELGE+LTDEELQEMIDEADRDQDGVINEEEF+RVMRKRGN PLDDIDSDD+Y
Sbjct:    1 MASGISSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAPLDDIDSDDDY 191          
BLAST of NO29G00560 vs. NCBI_GenBank
Match: XP_005854672.1 (caltractin, partial [Nannochloropsis gaditana CCMP526] >EKU21689.1 caltractin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.1 bits (671), Expect = 6.900e-67
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0
Query:    1 MAASNSSSRFRQGAGMGSPLSRRPKAGGKGKGLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMI 155
            MA+  SSSRFRQGAG+GSP SRRPK G KGKGLDEEELEEIREAFNLFD+DGK TIDVRELKAAFRALGFQVKKAEIRT LQ IDKE AATVTYDEFLDMAAPKVANRDEREEI KVFALFDDDGTG ISFRNLKRVATELGE+LTDEELQEMI
Sbjct:    1 MASGISSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMI 154          
BLAST of NO29G00560 vs. NCBI_GenBank
Match: XP_009042554.1 (hypothetical protein AURANDRAFT_39492 [Aureococcus anophagefferens] >EGB02747.1 hypothetical protein AURANDRAFT_39492 [Aureococcus anophagefferens])

HSP 1 Score: 246.9 bits (629), Expect = 5.100e-62
Identity = 132/195 (67.69%), Postives = 156/195 (80.00%), Query Frame = 0
Query:    1 MAASN-----SSSRFRQGAGMGSPLSRRPKAGGKGKGLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDE 191
            MAA N     S SR   G   G   SR PK      G+ EEE+EEIREAFNLFDT+GK  ID++ELKAAFRALGFQVKKAEIR ++Q++DKE++ TV +DEF++MA PK+ +RD REEI KVFALFDDD TG ISFRNLKRVA ELGE+LTDEELQEMIDEADRD DG+INE+EF+RVM+KRG+ PLDD+ SDD+
Sbjct:    1 MAARNRFGVESGSRALSGRPGGGRASRAPKRA----GVSEEEMEEIREAFNLFDTEGKGVIDIKELKAAFRALGFQVKKAEIRRMMQDVDKESSPTVLFDEFVEMATPKMQSRDTREEIMKVFALFDDDQTGAISFRNLKRVANELGENLTDEELQEMIDEADRDGDGMINEDEFFRVMKKRGDNPLDDLSSDDD 191          
BLAST of NO29G00560 vs. NCBI_GenBank
Match: CBN74472.1 (putative: similar to centrin [Ectocarpus siliculosus])

HSP 1 Score: 245.4 bits (625), Expect = 1.500e-61
Identity = 129/187 (68.98%), Postives = 156/187 (83.42%), Query Frame = 0
Query:    6 SSSRFRQGAGMGSPLSRRPKAGGKGK-GLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDEY 192
            ++ R RQG G G        AGG+GK  LDEE +EEI+EAF+LFDT+GK  ID+RELKAAFRALGFQVKK EIR +L ++DKE AA+V++++F++M  PKV  RD ++EI K+FALFD+DGTGGISFRNLKRVATELGE+LTD+ELQEMIDEADRDQDGV+N +EFYRVMRKR   PLDD+DSDDEY
Sbjct:    3 TAPRQRQGRGRGG------AAGGRGKQTLDEESMEEIKEAFSLFDTEGKGAIDIRELKAAFRALGFQVKKQEIRGMLTDVDKEGAASVSFNDFVEMVTPKVLARDPKDEIMKIFALFDEDGTGGISFRNLKRVATELGENLTDDELQEMIDEADRDQDGVVNADEFYRVMRKR-EDPLDDLDSDDEY 182          
BLAST of NO29G00560 vs. NCBI_GenBank
Match: XP_009517330.1 (hypothetical protein PHYSODRAFT_476233 [Phytophthora sojae] >ACH68466.1 calcium-dependent protein 5 [Phytophthora sojae] >EGZ30055.1 hypothetical protein PHYSODRAFT_476233 [Phytophthora sojae])

HSP 1 Score: 230.3 bits (586), Expect = 4.900e-57
Identity = 118/171 (69.01%), Postives = 139/171 (81.29%), Query Frame = 0
Query:   20 LSRRPKAGGKGKGLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDE 191
            L R+PK     K LDEE+LEEI+EAF+LFDTDG  TIDVRELKAA RALGFQVKKAEIR ++ +IDK+ +  +  DEF++M   K+ +RD REEI K+F LFDDD TG ISFRNLKRV TELGE LTDEE+QEMIDEADRD DG+INEEEF+RVM+KR   PLDD+DSDD+
Sbjct:   13 LRRKPKP--VKKALDEEDLEEIKEAFHLFDTDGSGTIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGAINLDEFIEMMTGKMNSRDSREEIMKIFQLFDDDNTGKISFRNLKRVCTELGETLTDEEMQEMIDEADRDGDGLINEEEFFRVMKKRSGNPLDDLDSDDD 181          
BLAST of NO29G00560 vs. NCBI_GenBank
Match: XP_008897137.1 (hypothetical protein PPTG_05358 [Phytophthora parasitica INRA-310] >ETI34175.1 hypothetical protein F443_19253 [Phytophthora parasitica P1569] >ETL81213.1 hypothetical protein L917_18407 [Phytophthora parasitica] >ETM34415.1 hypothetical protein L914_18494 [Phytophthora parasitica] >ETN17589.1 hypothetical protein PPTG_05358 [Phytophthora parasitica INRA-310] >ETO63059.1 hypothetical protein F444_19206 [Phytophthora parasitica P1976] >ETP04082.1 hypothetical protein F441_19068 [Phytophthora parasitica CJ01A1] >ETP32274.1 hypothetical protein F442_19030 [Phytophthora parasitica P10297] >KUF85775.1 Caltractin [Phytophthora nicotianae])

HSP 1 Score: 229.9 bits (585), Expect = 6.400e-57
Identity = 123/190 (64.74%), Postives = 150/190 (78.95%), Query Frame = 0
Query:    1 MAASNSSSRFRQGAGMGSPLSRRPKAGGKGKGLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDE 191
            M+++ S+S F   A   + L R+PK     K LDEE+LEEI+EAF+LFDTDG  +IDVRELKAA RALGFQVKKAEIR ++ +IDK+ + T+  DEF++M   K+ +RD REEI K+F LFDDD TG ISFRNLKRV TELGE LTDEE+QEMIDEADRD DG+INEEEF+RVM+KR   PLDD+DSDD+
Sbjct:    1 MSSAMSASAF---ARSRAALRRKPKP--VKKALDEEDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKIFQLFDDDNTGKISFRNLKRVCTELGETLTDEEMQEMIDEADRDGDGLINEEEFFRVMKKRSGNPLDDLDSDDD 185          
BLAST of NO29G00560 vs. NCBI_GenBank
Match: XP_002907526.1 (caltractin [Phytophthora infestans T30-4] >EEY64090.1 caltractin [Phytophthora infestans T30-4])

HSP 1 Score: 229.9 bits (585), Expect = 6.400e-57
Identity = 118/171 (69.01%), Postives = 140/171 (81.87%), Query Frame = 0
Query:   20 LSRRPKAGGKGKGLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDE 191
            L R+PK     K LDEE+LEEI+EAF+LFDTDG  +IDVRELKAA RALGFQVKKAEIR ++ +IDK+ + T+  DEF++M   K+ +RD REEI K+F LFDDD TG ISFRNLKRV TELGE+LTDEE+QEMIDEADRD DG INEEEF+RVM+KR   PLDD+DSDD+
Sbjct:   19 LRRKPKP--VKKVLDEEDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKIFQLFDDDNTGKISFRNLKRVCTELGENLTDEEMQEMIDEADRDGDGFINEEEFFRVMKKRSGNPLDDLDSDDD 187          
BLAST of NO29G00560 vs. NCBI_GenBank
Match: OWZ24286.1 (Caltractin [Phytophthora megakarya])

HSP 1 Score: 228.4 bits (581), Expect = 1.900e-56
Identity = 117/171 (68.42%), Postives = 139/171 (81.29%), Query Frame = 0
Query:   20 LSRRPKAGGKGKGLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDE 191
            L R+PK     K LDE++LEEI+EAF+LFDTDG  +IDVRELKAA RALGFQVKKAEIR ++ +IDK+ + T+  DEF++M   K+ +RD REEI K F LFDDD TG ISFRNLKRV TELGE LTDEE+QEMIDEADRD DG+INEEEF+RVM+KR   PLDD+DSDD+
Sbjct:   13 LRRKPKP--VKKALDEDDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKTFQLFDDDNTGKISFRNLKRVCTELGETLTDEEMQEMIDEADRDGDGLINEEEFFRVMKKRSGNPLDDLDSDDD 181          
BLAST of NO29G00560 vs. NCBI_GenBank
Match: XP_002894861.1 (caltractin [Phytophthora infestans T30-4] >EEY64727.1 caltractin [Phytophthora infestans T30-4])

HSP 1 Score: 228.0 bits (580), Expect = 2.400e-56
Identity = 117/171 (68.42%), Postives = 139/171 (81.29%), Query Frame = 0
Query:   20 LSRRPKAGGKGKGLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDE 191
            L R+PK     K LDEE+LEEI+EAF+LFDTDG  +IDVRELKAA RALGFQVKKAEIR ++ +IDK+ + T+  DEF++M   K+ +RD REEI K+F LFDDD TG ISFRNLKRV TELGE+LTDEE+QEMIDEAD D DG INEEEF+RVM+KR   PLDD+DSDD+
Sbjct:   13 LRRKPKP--VKKVLDEEDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKIFQLFDDDNTGKISFRNLKRVCTELGENLTDEEMQEMIDEADHDGDGFINEEEFFRVMKKRSGNPLDDLDSDDD 181          
BLAST of NO29G00560 vs. NCBI_GenBank
Match: ETK74545.1 (hypothetical protein L915_18679 [Phytophthora parasitica] >ETL27966.1 hypothetical protein L916_18584 [Phytophthora parasitica])

HSP 1 Score: 227.6 bits (579), Expect = 3.200e-56
Identity = 122/190 (64.21%), Postives = 149/190 (78.42%), Query Frame = 0
Query:    1 MAASNSSSRFRQGAGMGSPLSRRPKAGGKGKGLDEEELEEIREAFNLFDTDGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDMAAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEELQEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDE 191
            M+++ S+S F   A   + L R+PK     K LDEE+LEEI+EAF+LFDTDG  +IDVRELKAA RALGFQVKKAEIR ++ +IDK+ + T+  DEF++M   K+ +RD REEI K+  LFDDD TG ISFRNLKRV TELGE LTDEE+QEMIDEADRD DG+INEEEF+RVM+KR   PLDD+DSDD+
Sbjct:    1 MSSAMSASAF---ARSRAALRRKPKP--VKKALDEEDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKILQLFDDDNTGKISFRNLKRVCTELGETLTDEEMQEMIDEADRDGDGLINEEEFFRVMKKRSGNPLDDLDSDDD 185          
The following BLAST results are available for this feature:
BLAST of NO29G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21277.17.100e-8890.58caltractin [Nannochloropsis gaditana][more]
XP_005854672.16.900e-6790.26caltractin, partial [Nannochloropsis gaditana CCMP... [more]
XP_009042554.15.100e-6267.69hypothetical protein AURANDRAFT_39492 [Aureococcus... [more]
CBN74472.11.500e-6168.98putative: similar to centrin [Ectocarpus siliculos... [more]
XP_009517330.14.900e-5769.01hypothetical protein PHYSODRAFT_476233 [Phytophtho... [more]
XP_008897137.16.400e-5764.74hypothetical protein PPTG_05358 [Phytophthora para... [more]
XP_002907526.16.400e-5769.01caltractin [Phytophthora infestans T30-4] >EEY6409... [more]
OWZ24286.11.900e-5668.42Caltractin [Phytophthora megakarya][more]
XP_002894861.12.400e-5668.42caltractin [Phytophthora infestans T30-4] >EEY6472... [more]
ETK74545.13.200e-5664.21hypothetical protein L915_18679 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL063nonsL063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005153NSK005153Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00560.1NO29G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00560.1NO29G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00560 ID=NO29G00560|Name=NO29G00560|organism=Nannochloropsis oceanica|type=gene|length=1809bp
CAGGAGTACGTCCACACACCAAGCAATCATGGCCGCCAGCAATAGCAGCA
GCCGTTTCCGCCAAGGTGCGGGGATGGGGAGCCCACTGTCGCGACGACCC
AAAGCCGGGGGGAAGGGCAAGgtgagtgaacgtgatgttgccttgaggga
ggcagaagggagggagggaggggaggagaggaaaaggagtgttgagcacg
tacgcacaaatccgatttatatgtgaactccttggacagGGCTTGGATGA
GGAGGAGCTGGAGGAGATTCGCGAGGCCTTTAACTTGTTTGACACCGATG
GGAAAATGACCATTGATGTGCGAGAGCTCAAGGCCGCGTTTCGGGCGCTG
GGTTTTCAGgtatggagggagggagggcgggaaaggagaagagggacttt
aatagagaaaggaggaagaaggtcatcacaagaataaccggtgtctatga
acactcatgtttgcattttctcccctctcgtctcttctctccctcccttc
ccttcccttccctcccagGTGAAGAAAGCGGAGATCCGCACGCTGTTGCA
GAACATTGACAAGGAAGCGGCTGCCACGGTCACGTACGACGAGTTTTTGG
ATATGGCAGCCCCCAAGGTGGCGAACCGAGATGAGCGGGAAGAGATCCAC
AAGgtgagggagggagggagggggagggaaagaaggaaggagaggaagaa
ggacacggcgacgtgacgtatgacgagtgggttcggaggatggccggggg
atggggggcttcagagtaaatgggagataccggatgccctccctcccctc
caccgacacagaacaacaaatcagggggcgcgaaatcttacccttccctc
cctccctccttccctccctccttcttcttcttgcagGTGTTTGCCTTGTT
CGATGACGATGGCACGGGGGGAATCTCGTTCCGTAATCTTAAACGGGTGG
CAACTGAGCTTGGGGAGCATCTGACGGACGAGGAGCTGCAGGAGATGATC
Ggtaaggaagggagggaaggaggaagtaaggggaggaggagaagggaggt
gagagtagagggatgaaggaacacttcgactcatttaccctctctcgttc
cctccgtttctccctccatccctgctgtagATGAGGCGGATCGGGACCAA
GACGGTGTGATCAACGAAGAAGAGTTTTATCGTGTGATGAGGAAACGCGG
AAATACCCCCCTGGATgtaagagggagggagggagagagggaagctgtat
agttgcatttattattctccctctctcttcttttcattctctcttcttct
cattttcttccctttttctcgcccatccacagGACATTGATTCCGATGAC
GAGTATTAAGTGCATCCCCCCCGACAAAAACGGAGGAAGGCATGTCCGTT
GAGAAAGAGAAACTGACCCGAAGACGATCGCGTATGCGCGGGTGTGAGAG
AGTAATAAAAAAGAGTGGGATGTGTATGGTGAAAGGGGAAGAATGGCGCG
GGCTAGTCGTGCGAAAGGGAGGATTGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGAAAAGAGTGGTTCCCGCTGGAAACGGTAAAGGAATG
AAAACACAACTTGTGCAGAAGAGAGAAGGAGAAAACCCCAAGAAGTAAGA
AAAGAGGAAGCAGCCACCAAAAAACGACTCCTCCATTGCAATAAAATGGC
AGGTAAAGAATCACGCGCGCACACAAACACACACGTGCACACGCAAACAT
AATGCGAGTCCAAAGATGAAGGGTCTCGACCCATCGCCACTAAGAAAATC
GGTATGAGG
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protein sequence of NO29G00560.1

>NO29G00560.1-protein ID=NO29G00560.1-protein|Name=NO29G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MAASNSSSRFRQGAGMGSPLSRRPKAGGKGKGLDEEELEEIREAFNLFDT
DGKMTIDVRELKAAFRALGFQVKKAEIRTLLQNIDKEAAATVTYDEFLDM
AAPKVANRDEREEIHKVFALFDDDGTGGISFRNLKRVATELGEHLTDEEL
QEMIDEADRDQDGVINEEEFYRVMRKRGNTPLDDIDSDDEY*
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Synonyms
Publications