NO29G00550, NO29G00550 (gene) Nannochloropsis oceanica

Overview
NameNO29G00550
Unique NameNO29G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1389
Alignment locationchr29:211373..212761 +

Link to JBrowse

Properties
Property NameValue
Descriptionmitochondrial acyl carrier protein 2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:211373..212761 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006633fatty acid biosynthetic process
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036736ACP-like_sf
IPR003231Acyl_carrier
IPR009081Acyl_carrier_prot-like
Homology
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: XP_005850509.1 (hypothetical protein CHLNCDRAFT_59568 [Chlorella variabilis] >EFN58407.1 hypothetical protein CHLNCDRAFT_59568 [Chlorella variabilis])

HSP 1 Score: 120.9 bits (302), Expect = 4.100e-24
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 0 
Query:   56 RNFGNAQTFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVR 147
            R FG+A ++LD+K+V DRVL VVKNFEKVE GKV+  A F++DL LDSLD VE+VMA+EEEFA+EIPD+EADKI S GDAI YI+S+P  R
Sbjct:   36 RGFGDA-SYLDKKDVTDRVLGVVKNFEKVEEGKVSPTAAFQKDLGLDSLDTVELVMALEEEFAIEIPDSEADKIQSCGDAISYISSNPMAR 125
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: EPS67124.1 (acyl carrier protein [Genlisea aurea])

HSP 1 Score: 120.9 bits (302), Expect = 4.100e-24
Identity = 66/106 (62.26%), Postives = 77/106 (72.64%), Query Frame = 0 
Query:   46 ARPVVGGLS---SRNFGN--AQTFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVR 147
            +RP   GLS   SR F +    TFLD+ EV DRVL VVKNF+KV+P KVT  A F  DL LDSLD VE+VMA+EEEF  EIPDNEADKI SIG A+ +I+SHPQ +
Sbjct:   22 SRPTARGLSLIISRRFSDEVRGTFLDKSEVTDRVLGVVKNFQKVDPSKVTPNAHFHNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSIGLAVDFISSHPQAK 127
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: GAX94692.1 (acyl carrier protein [Pythium insidiosum])

HSP 1 Score: 120.9 bits (302), Expect = 4.100e-24
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 0 
Query:   43 ALLARPVV--GGLSSRNFGNAQTFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVR 147
            A++ARPV      + R FG+AQTFLD  EV+DRVL V+KNFEKV+  KV  AA+F +DL LDSLDVVEVVMA+EEEF +EIPDNEA+K+ +    I YI +HP  +
Sbjct:   16 AMVARPVAFRQVAAPRFFGSAQTFLDRHEVSDRVLSVIKNFEKVDDKKVNEAAKFVDDLGLDSLDVVEVVMAMEEEFTIEIPDNEAEKLTTPAQVIDYIAAHPMAK 121
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: GAX22373.1 (NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1 [Fistulifera solaris])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 0 
Query:   44 LLARPVVGGLSSRNFGNAQTFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVR 147
            L A+P V   + R+F     FLD KEV DR++ VVKNF++V+P KVT    F +DL LDSLD+VEVVMAIE+EFA+EIPD EADKI +I  AI YI+SHP  +
Sbjct:   25 LRAQPQVSVYAVRHFSAPPAFLDAKEVTDRIITVVKNFDQVDPSKVTPDVSFAKDLGLDSLDIVEVVMAIEDEFAIEIPDQEADKITTIAQAIDYISSHPMAK 127
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: GAX10222.1 (NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1 [Fistulifera solaris])

HSP 1 Score: 118.6 bits (296), Expect = 2.000e-23
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 0 
Query:   44 LLARPVVGGLSSRNFGNAQTFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVR 147
            L A+P V   + R+F     FLD KEV DR++ VVKNF++V+P KVT    F +DL LDSLD+VEVVMAIE+EFA+EIPD EADKI +I  AI YI+SHP  +
Sbjct:   25 LRAQPQVTVYAIRHFSAPPAFLDAKEVTDRIITVVKNFDQVDPSKVTPDVSFAKDLGLDSLDIVEVVMAIEDEFAIEIPDQEADKITTIAQAIDYISSHPMAK 127
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: PRW18389.1 (hypothetical protein C2E21_9294 [Chlorella sorokiniana])

HSP 1 Score: 118.6 bits (296), Expect = 2.000e-23
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 0 
Query:   56 RNFGNAQ-TFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVRREGG 151
            R FG+A  +FLD+ EV DRVL VVK FEKVE GKV+ AA F++DL LDSLD VE+VMA+EEEFA+EIPD+EADKI S  DAI YI S+P   R  G
Sbjct:   39 RGFGDAAGSFLDKGEVTDRVLNVVKGFEKVEEGKVSPAASFQKDLGLDSLDTVELVMALEEEFAIEIPDSEADKILSCADAISYIASNPMASRASG 134
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: XP_008388819.1 (PREDICTED: acyl carrier protein 2, mitochondrial-like [Malus domestica])

HSP 1 Score: 118.2 bits (295), Expect = 2.600e-23
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0 
Query:   63 TFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVR 147
            TFLD+ EV DRV+ VVKNF+KV+P KVT  A F+ DL LDSLD VE+VMA+EEEF  EIPDNEADKI SIG A+ +I+SHPQ +
Sbjct:   50 TFLDKSEVTDRVVSVVKNFQKVDPSKVTPNAHFESDLGLDSLDSVEIVMALEEEFGFEIPDNEADKIKSIGQAVDFISSHPQAK 133
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: XP_020703046.1 (acyl carrier protein 2, mitochondrial [Dendrobium catenatum])

HSP 1 Score: 118.2 bits (295), Expect = 2.600e-23
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0 
Query:   63 TFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVR 147
            +FLD+ EV DRV+ VVKNF+KV+P KVT  A F+ DL LDSLD VEVVMA+EEEF  EIPDNEADKI+SI DA+ +I SHPQ +
Sbjct:   43 SFLDKSEVTDRVITVVKNFQKVDPSKVTPKANFQTDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISSINDAVDFIASHPQAK 126
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: NP_001149479.1 (acyl carrier protein [Zea mays] >ACG35559.1 acyl carrier protein [Zea mays])

HSP 1 Score: 117.9 bits (294), Expect = 3.400e-23
Identity = 67/125 (53.60%), Postives = 81/125 (64.80%), Query Frame = 0 
Query:   24 MTVARRGTPA--LVTAMRQQQALLARPVVGGLSSRNFGNAQTFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVR 147
            M  ARR   A   V  +    A    P  G L S       +FLD+ EVADRV+ VVKNF+KVEP KVT +A F++DL LDSLD VE+VMA EEEF+ EIPDNEA+KI SI  A+ +I SHPQ +
Sbjct:    3 MAAARRALLAHLRVPVVHPAAAAATIPAAGRLLSSTTERKGSFLDKGEVADRVVSVVKNFQKVEPSKVTPSAHFQKDLGLDSLDTVEIVMAFEEEFSFEIPDNEAEKIDSIKTAVDFIASHPQAK 127
[Close]
BLAST of NO29G00550 vs. NCBI_GenBank
Match: XP_007206137.1 (acyl carrier protein 2, mitochondrial [Prunus persica] >XP_008218471.1 PREDICTED: acyl carrier protein 2, mitochondrial [Prunus mume] >ONI05220.1 hypothetical protein PRUPE_6G363300 [Prunus persica])

HSP 1 Score: 117.5 bits (293), Expect = 4.500e-23
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0 
Query:   63 TFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLSLDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVR 147
            TFLD+ EV DRV+ VVKNF+KV+P KVT  A F+ DL LDSLD VE+VMA+EEEF  EIPDNEADKI SIG A+ +I+SHPQ +
Sbjct:   50 TFLDKSEVTDRVISVVKNFQKVDPSKVTPNAHFQNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSIGLAVDFISSHPQAK 133
The following BLAST results are available for this feature:
BLAST of NO29G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005850509.14.100e-2468.13hypothetical protein CHLNCDRAFT_59568 [Chlorella v... [more]
EPS67124.14.100e-2462.26acyl carrier protein [Genlisea aurea][more]
GAX94692.14.100e-2459.43acyl carrier protein [Pythium insidiosum][more]
GAX22373.11.200e-2358.25NADH dehydrogenase (ubiquinone) 1 alpha/beta subco... [more]
GAX10222.12.000e-2358.25NADH dehydrogenase (ubiquinone) 1 alpha/beta subco... [more]
PRW18389.12.000e-2365.63hypothetical protein C2E21_9294 [Chlorella sorokin... [more]
XP_008388819.12.600e-2367.86PREDICTED: acyl carrier protein 2, mitochondrial-l... [more]
XP_020703046.12.600e-2367.86acyl carrier protein 2, mitochondrial [Dendrobium ... [more]
NP_001149479.13.400e-2353.60acyl carrier protein [Zea mays] >ACG35559.1 acyl c... [more]
XP_007206137.14.500e-2367.86acyl carrier protein 2, mitochondrial [Prunus pers... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL063nonsL063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005155NSK005155Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00550.1NO29G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673194gene_8229Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00550.1NO29G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00550 ID=NO29G00550|Name=NO29G00550|organism=Nannochloropsis oceanica|type=gene|length=1389bp
ATGGCTCTCCGTCAATTTCTGAAGCTGGCATCTAGTGCCGCCCGCTCCCA
GGCACAGCAACGGGGGATCATGACAGTCGgtgcgtcctcgctccctctct
ccctcccgtccctccctcccgtcaatctaacctcgtcccatgtacattaa
ctgacgtacagCTCGTCGAGGGACGCCTGCCTTGGTGACGGCCATGCGGC
AGCAACAGGCGCTTTTAGCCCGGCCTGTGGTGGGGGGTTTGAGCAGCCGG
AACTTTGGCAATGCGCAGgtggggagggagtgagggagggaggaaaggag
ggaggaaatagatcgacaatcggaagaccgaagggattggagacaagcgg
agacgaaagatgacagatagatggggtcgtaggaggagaagggtggaggg
ctgcttagggcgggaaaattaagagaaacgaaaaggagaagggagggatg
gaaggagtgagggaaggagggatgtcgcatgctggtggcaatcgacaacg
attttcccacctttagatatttcatgttattttgacgcactctcgctcgc
actctctcttactctccttctctttccacccctagACGTTTCTGGACGAG
AAGGAGGTGGCGGACCGCGTTCTCCAAGTGGTGAAGAATTTTGAGAAGgt
gaggcggagggagggagggagggaggtaatgttttgtacggggagagaat
gtggatgtagtatgagacagaactaatcgggcaagtaaacgaacgggtgt
aaacgtgttcccgcttgtcaacctccccccccccctttcactctctctcc
agtgcgaccatgactgataacgcctctcacttccactctctctcccttcc
gccccctctcgttgcagGTGGAGCCCGGGAAGGTGACGGCCGCCGCCCGC
TTCAAGGAGGATCTCTCCCTGGACTCCTTGGACGTGGTGGAGgtgcgttc
gagggagagagggattgagggagggagggaagccggaggataggatttgc
acccaggatgcttaatgtatattttggatttgttattttggcatcataga
ctcattcgttctccctttccccctccctgggttggaataatgcggtgcag
gaagaatttgccttaccctcccctccctccctccttccctccctctctcc
ctccctagGTGGTAATGGCGATCGAGGAAGAATTTGCGTTGGAGATTCCA
GACAACGAGGCAGATAAGATTGCTTCCATTGGTGATGCCATTAAATATAT
CACATCCCATCCCCAGGTCCGGAGGGAGGGAGGGAGGAAGGGGAGGGAAG
GTTTCGAGGCTAGTGTGTTGAGCTTTCGCATTGACCCCGATTTAAATGTC
ATTTGCACAAAATACACAGGCAAAATAATAATAATATAG
back to top

protein sequence of NO29G00550.1

>NO29G00550.1-protein ID=NO29G00550.1-protein|Name=NO29G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MALRQFLKLASSAARSQAQQRGIMTVARRGTPALVTAMRQQQALLARPVV
GGLSSRNFGNAQTFLDEKEVADRVLQVVKNFEKVEPGKVTAAARFKEDLS
LDSLDVVEVVMAIEEEFALEIPDNEADKIASIGDAIKYITSHPQVRREGG
RKGREGFEASVLSFRIDPDLNVICTKYTGKIIII*
back to top
Synonyms
Publications