NO29G00540, NO29G00540 (gene) Nannochloropsis oceanica

Overview
NameNO29G00540
Unique NameNO29G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length780
Alignment locationchr29:209841..210620 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:209841..210620 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G00540 vs. NCBI_GenBank
Match: XP_005854669.1 (hypothetical protein NGA_0199100 [Nannochloropsis gaditana CCMP526] >EKU21686.1 hypothetical protein NGA_0199100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 137.1 bits (344), Expect = 3.100e-29
Identity = 73/104 (70.19%), Postives = 83/104 (79.81%), Query Frame = 0 
Query:    1 MALRRLFLSASA-MRPLAISVADARVSQVMLMSGKSGFDDKGHAIEAAYIRQAEEKVLKRLLKKLKEEEKPPCDVTAKKELEKILGSIPEDVAKKLMDWKKTDH 104
            MALRRL  S+SA MRP   +    R +  M MSGKS FDDK HA+E  YIRQAEEK+LK+LLKKLKEEEKP CD TAKKELEKI+GS+PED+AKKLMDWKK+ H
Sbjct:    1 MALRRLISSSSASMRPTLAAAVTVRSAPAMRMSGKSSFDDKEHAMEDMYIRQAEEKILKKLLKKLKEEEKPACDTTAKKELEKIMGSVPEDLAKKLMDWKKSKH 104
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BLAST of NO29G00540 vs. NCBI_GenBank
Match: EWM21275.1 (ATPase inhibitor, IATP, mitochondria [Nannochloropsis gaditana])

HSP 1 Score: 136.7 bits (343), Expect = 4.000e-29
Identity = 72/104 (69.23%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:    1 MALRRLFLSASA-MRPLAISVADARVSQVMLMSGKSGFDDKGHAIEAAYIRQAEEKVLKRLLKKLKEEEKPPCDVTAKKELEKILGSIPEDVAKKLMDWKKTDH 104
            MALRRL  S+SA MRP   +  + R +  M MSGKS FDDK HA+E  YIRQAEEK+LK+LLKKLKE+EKP CD TAKKELEKI+GS+PED+AKKLMDWKK+ H
Sbjct:    1 MALRRLISSSSASMRPTLAAAVNVRSAPAMRMSGKSSFDDKEHAMEDMYIRQAEEKILKKLLKKLKEDEKPACDTTAKKELEKIMGSVPEDLAKKLMDWKKSKH 104
The following BLAST results are available for this feature:
BLAST of NO29G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854669.13.100e-2970.19hypothetical protein NGA_0199100 [Nannochloropsis ... [more]
EWM21275.14.000e-2969.23ATPase inhibitor, IATP, mitochondria [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL063nonsL063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005156NSK005156Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00540.1NO29G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601200gene_8228Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100331g8gene9147Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00540.1NO29G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00540 ID=NO29G00540|Name=NO29G00540|organism=Nannochloropsis oceanica|type=gene|length=780bp
ATGGCTCTCCGCCGCCTCTTCCTCTCTGCCTCCGCAATGCGCCCCCTCGC
GATCTCGGTGGCGGACGCGCGAGTGTCCCAAGTCATGCTCATGTCGGGCA
AGTCTGGCTTTGACGACAAGGGCCATGCCATCGAGGCGGCCTATATCAGG
gtaagcgaggaaacagatggaatggaatgatgacaccggagaggatgatg
gtgtttggcatctcgtggttgagaaaaatgtaggaagactggtgcttgga
taccagtggggcatacggcatgtctcatccctccctccgtcccctcctcc
cgtccttcctccctccgtcctcatccgacagCAAGCCGAGGAGAAGGTGT
TGAAGAGGCTGCTCAAGAAGCTCAAGGAGGAGGAGAAACCCCCCTGCGAT
GTCACGGCCAAGAAGGAGCTCGAGAAGgtattagcggtaccctcctatcg
tccctccctctttctctccctccctccctcgcgctctgcttttgctcccc
cgaggcgcttcccctggagtcggaagactttttctccctccttacctcca
tccttatcttcctccctcctttactctctcctcgcctatccttgagtccc
gcgtgcctcggccattattctgacctccctgttgccctccttccaaagca
taagaacttggattccttgtttcatccttccctccctccctccctccctc
cctccctccctcagATCTTGGGTTCTATCCCTGAGGACGTGGCGAAGAAG
CTGATGGACTGGAAGAAGACCGACCACTAG
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protein sequence of NO29G00540.1

>NO29G00540.1-protein ID=NO29G00540.1-protein|Name=NO29G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MALRRLFLSASAMRPLAISVADARVSQVMLMSGKSGFDDKGHAIEAAYIR
QAEEKVLKRLLKKLKEEEKPPCDVTAKKELEKILGSIPEDVAKKLMDWKK
TDH*
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Synonyms
Publications