NO29G00490, NO29G00490 (gene) Nannochloropsis oceanica

Overview
NameNO29G00490
Unique NameNO29G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1684
Alignment locationchr29:186711..188394 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:186711..188394 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO29G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL063nonsL063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005168NSK005168Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00490.1NO29G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00490.1NO29G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00490 ID=NO29G00490|Name=NO29G00490|organism=Nannochloropsis oceanica|type=gene|length=1684bp
ATGGCTCCATCCAAGCGCGATACCACGTCAAGGGGCATCACACGgtgagt
agggcttgatactctctgacctcccatctcccctccctccctccctgtct
ccccatttttccttcctctcttgctcacgtcttcatgccatacaaacgca
cccagATTGTATATTTTGAAAAGCACCGAGGGTATCCACGAGCTGGCGGG
GCGGATGAAAATCCTGACCAAGGTGTTGGACGCACTTAAGAgtacgtgta
aagagggaggtaggggtagatgggaagaaagaaaagaaatgcaaaggcgt
aattgcgtatgtcttcacggcttgcttccctctcattccctcacagGCGC
CCCTCCAAAAGAATGGCACGTGGAAGTGGCCTATAAAACAGTGCGTGGTC
CTCGCACAGGGACAGGACGGGAGGCAGAGCAGCAGCAAGAAGCAGGTGTT
ACAGGCGAAAGCTTGTATGTCGTGAAGAGTTCAGCAGCACCAGGAAGGGT
GTATATGCTGgtatgaagggaaggtgggggaaagggagacaggaaaggag
ggagagaaggagggaaactatcactgaccttccattttcttaccacttca
gGCTGCTAAAGCCAAAGGGAACAGCAAAGCAAGTAAAGGAGGGGGAGGAA
GGGGAGATGAATGGGGAGGAGGAGGAGGGGGAGCAGCAGCCGAGAAGGAG
TTCTCGCCCTTGGTGGAGATGGGGGCGTTGGGTGACGAGATCGTGGGTAT
CCTCAAGGGCTATAGCAACAGACTGGTGCTGCAGATCGAGgtgagggagg
gagggagggagggagggagggagggagagagggaggggggaggattgggc
ttatgatcatggagaggatttgtgggtaagagaatgaggagccggacgga
gggaggggagggaggagggtatggagatggcaagggaaggaggggaagga
gaggcatacgtgctccccttcctctttctttttagccccgtgagaagaga
acgctgtacacaaatttcactcacccctccctccctccctcccattagGG
CACGAGTTATCGCGTGAGTGGAGGGCTCTTGTATGCCGCCGCCGGTTTTT
TGAACAGAGGCGATGCGCTGTCTTCCATCGTGCTCCAGgtaggtagagag
ggagggagggagagagggagggcgggcgggagtgagggagggcatagaga
aatatgaatcttttcaatgccgccttctcctccctcccttcctttctccc
ctccctccctccttttcccacagGTACGCTACGAGAACGAACATGCCTCC
CTCACGGACGCAGAGCAGGTCCTAGAAGAGTTTGTGGAGATGTGCTTGAC
AGGCCAGGAAGAGGAGGAGGAGGATGAAGGGGTGGAAGAAAGGGAGGGCA
GGGAGGGAGGGAACGAGAAGGAGGAGGCAGTAGAGGTGGCTGCGGTTTCT
TTCGAATCTGGTGCTGCAATCAACAAAGATGGCAATCTGAGCGTGAAAGT
GGCGAGGCCGAGTCAAGGGGGAGGAGAAGGCAGGGAGGGAGGGAAGAAGG
GAGGGAGGATACCGGCGTTGAGCGTTAGGAGTATAGACCCGTGTATAGTG
GCGATACCGGGGTTCGTCAAGGACGACATTTATACCATGAAATTTGCAGT
ATTGCAGTACATCGAGCTGTTCAAGGTGGCATAG
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protein sequence of NO29G00490.1

>NO29G00490.1-protein ID=NO29G00490.1-protein|Name=NO29G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MAPSKRDTTSRGITRLYILKSTEGIHELAGRMKILTKVLDALKSAPPKEW
HVEVAYKTVRGPRTGTGREAEQQQEAGVTGESLYVVKSSAAPGRVYMLAA
KAKGNSKASKGGGGRGDEWGGGGGGAAAEKEFSPLVEMGALGDEIVGILK
GYSNRLVLQIEGTSYRVSGGLLYAAAGFLNRGDALSSIVLQVRYENEHAS
LTDAEQVLEEFVEMCLTGQEEEEEDEGVEEREGREGGNEKEEAVEVAAVS
FESGAAINKDGNLSVKVARPSQGGGEGREGGKKGGRIPALSVRSIDPCIV
AIPGFVKDDIYTMKFAVLQYIELFKVA*
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Synonyms
Publications