NO29G00450, NO29G00450 (gene) Nannochloropsis oceanica

Overview
NameNO29G00450
Unique NameNO29G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2623
Alignment locationchr29:174332..176954 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA repair helicase rad5,16, putative
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:174332..176954 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR000330SNF2_N
Homology
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BLAST of NO29G00450 vs. NCBI_GenBank
Match: OQS03123.1 (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Thraustotheca clavata])

HSP 1 Score: 73.2 bits (178), Expect = 4.100e-9
Identity = 57/202 (28.22%), Postives = 78/202 (38.61%), Query Frame = 0 
Query:  531 VVDETQLDRLYRLNEEHIRALPPFPS-PLPLLRRGVELRRYQRQALAWMLKREGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVWLGEGLVKTSAEMVGEQALHHPLWDRYYMAEVEGGRKGGREGGVRLVNPVPFYSNPYSKVVQMERPVPPKECRGGILADDMGMGKTIMV 732
            + DET +D LYR        +P + +  +  L   + LR YQ QAL WML RE  +                                                       S  +G+ L   SA    +QA+ HPLW                    R  + VP+Y N + ++  ++ P+PP  CRGGILADDMGMGKTIM+
Sbjct:  107 ITDETTVDVLYRTQISQADIIPGYSTDAIHSLLYNITLRSYQEQALQWMLFRETNQ--------------------------------------------------DALSDSHLIGKALRLDSASADEKQAI-HPLWT--------------TRNCTRYGSTVPYYVNVFERLASLKPPLPPNPCRGGILADDMGMGKTIMI 243
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BLAST of NO29G00450 vs. NCBI_GenBank
Match: ORY91570.1 (SNF2 family N-terminal domain-domain-containing protein [Leucosporidium creatinivorum])

HSP 1 Score: 66.2 bits (160), Expect = 5.000e-7
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 0 
Query:  651 TSAEMVGEQALH----HPLWDRYYMAEVEGGRKGGREGGVRLVNPVPFYSNPYSKVVQMERPVPPKECRGGILADDMGMGKTIMV 732
            TS E+  E A      HPLW+ Y         K    G V L++  PFY NPYS  + ++ P    +CRGGILAD+MG+GKTIMV
Sbjct:  364 TSMEVGDEDAREDMSMHPLWEEYRFPS-----KPDLSGDV-LMDDEPFYYNPYSGEMSLDFPKASNKCRGGILADEMGLGKTIMV 442
The following BLAST results are available for this feature:
BLAST of NO29G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
OQS03123.14.100e-928.22DNA repair protein RAD5, SWI/SNF-related matrix-as... [more]
ORY91570.15.000e-744.71SNF2 family N-terminal domain-domain-containing pr... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00450.1NO29G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632686gene_8216Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00450.1NO29G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00450 ID=NO29G00450|Name=NO29G00450|organism=Nannochloropsis oceanica|type=gene|length=2623bp
ATGACATACCCAAACAACAGCGGCAGCACCTCATCCTCGCCTTATTCTGT
AGCCGCTGCAAACATCCAGGCCTTGGCCTCTCTTCGTTCATTCGGCATAC
CAGGTGATGACGCCACCCTTGACCGTTTGCTTCAAGCGGCGGGCAACAAT
GTAGAGCGAGCAATCAATAACCATTTTGATGCCCGCCTTGCACTCGGCCC
TCCTCTTCCGGTCCCTTATCCTCGACCTCCCGAGCGAAAACAGGCAGCAG
CGGCAGGAGGATGTAGAGAAACAGCAGCAGCAGCGGCAGCAGTAGCAGCA
GCAGCAGCACCATTGGCAAATGTGGTGGAAATCGTGGAAGTAGACGACTC
AGAAGACAGTAGTTTGTTTGAAGTAGAACAAGAACGAAGAGCAGCAGCGG
CAGCAGCAACAAAAATGGGAGGAGGAGGTGGAGGAGGAAGAGCAAGAGAA
ACGGTGAAAGAACAGCAGCAGCAGCAGCAGCAGCAGCAATTACAACAACA
AAAGTGTCTGCACGGCGCTGGACCTGACTGCAAGGCCTGTCAACACCTCA
GCACTTCCTCCCTGCCGTCCTCCCCTTCTTCTCCCTCCTCCTGGCCTAAA
TGTCTGGGCCAGCGACGGGTGGAGGGCTGTTATTGCTTGACAAGAGGAGG
GGCCGTTCAAGCGGGCGAGGAGGTAGCCGTCTTCCTCGAGGCTGTTTCTG
GTGGTGGCAACAGCAGTCGTAGCAGCAGCAGCAGCCATAGCAGCAGCAGC
AGCAGCAGCAGTAAGAAGAGGAGAAACAGCAACACCAGCAACAGCAGTAA
GAAGATGAAGGGGCAGATGGGGGAGAAAGAGGGGGGTGAGGATAATGATG
ATGAGGAGGAGGAGGATGGAGAGGACCTGGATTTTGGAGAAAAGAAGAAG
AAAAAGGAAACCTTCACCCCTAACAGAACAGCAGCAGCAACAGCAACAAC
AGGGAAAGGGGGAGGTGGAGGGGGAGGGAAAGGGAGAGGGAAAGTTCGAA
ATTTCTCCACCATCAGCAGCAGCAAGAAAGCTGCAGCAGCTGCAGGGACA
TCTGTCCGGTTCCGATCCTTCGGTGTGGAGGGAGGGGCGCGGATAGAAGG
ACGGTTGCCGGTGGAAATCGCCGCGGTGTTGATGCCGTTACTGCGGGAGC
ATTTGATTGTAGTGGAGGCCACAGCGTGCCATTCCATCTATTCCAGTGAA
TTTTTCACTCCCCTGGCCCTGCGTGTACGTGTAAGCGTCACCGGCGTTGA
ATTCTTCCGTCTTTCCCACAGCCCGCCTTTGTCAGCTGTCGCAGGAAGAA
GCAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGATAATGGGGGAGAA
GGAGGAGTTGAAAGAGGAGCAGTGGCCATAGCGGCGTCACGGTTGATTCA
CTTTTTAAATTCTGGAAAAGTGGACGTTGTGAACCAGCCGGCGGAAGAAG
CGAATGAGAGCAAGAAGCGACGGATGATGGATAGTGCCTCCTCGCCTGCG
CCCTCCCGCCAAACACAAACAGCAGCAGCAGCAGCAGCGGTGGCAGGAGC
GACAGAAGCAGCAGAAGCAGCAGAAAGAGAGGACGGTGACGTCGTTGACG
AAACCCAGCTCGACCGTCTTTACCGCTTGAACGAAGAACACATCCGTGCC
CTTCCCCCCTTCCCCTCCCCCCTCCCCCTCCTCCGAAGGGGGGTGGAACT
GAGGCGGTACCAGCGGCAGGCCCTCGCCTGGATGTTGAAGAGAGAGGGAG
GGAAGGAGGGTTGGAAGGAAGGAGGGATGCATTTGGAGATGCAAGGAGGA
AAAGTGGGCGGGAAGACCGAAGAGGAGGGAGAGGAGAAGGGAGGGAGAGC
GATGTTGCTCGAAACAGCAGCAGTGGCAGCAAAGGAAGCAGGAAAGGGAG
GGAGGGAGGGAGGGAAGGCGAGCGTGTGGTTGGGGGAGGGTTTGGTCAAG
ACTTCAGCGGAGATGGTAGGAGAGCAGGCGCTACATCACCCCTTGTGGGA
CCGTTATTACATGGCGGAGGTGGAGGGAGGGAGGAAGGGAGGGAGGGAGG
GAGGGGTGAGGCTGGTGAATCCCGTGCCATTCTATTCTAATCCGTATTCG
AAGGTGGTGCAGATGGAGAGACCTGTGCCGCCTAAGGAGTGCCGGGGGGG
GATCTTGGCCGACGACATGgtaagaggaaggagggagggagggagggagg
gagggcaaagtgaggttaaggggcctaggtaggtagggcgggaaataaag
tcgcactgcaatgacatgtgcagtgcagtcgccatcgccggagccgttac
cgaatgcggttggattgggctacccaagggctatgtatttcatgtctgaa
taatatataataaaacaacaaaagtaataatcttatttattttaaattta
cttgattgttgtataataaatatgcacctcctacttgaatcaaacacagG
GCATGGGCAAGACCATCATGGTCCTCGCCCTCCTCCTCACAGCCAAGCAC
CATCACCTCCACCCCCTCCTCCTCCCTACTCCGCCGCCTCCCTCCTCCCA
CTCCCCTCGTCCCTCCCTCCCACACTGGTCGTCGTTCCCCTCTCCGTCCT
TGCCCAGTGGCACGACGAGATAA
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protein sequence of NO29G00450.1

>NO29G00450.1-protein ID=NO29G00450.1-protein|Name=NO29G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=781bp
MTYPNNSGSTSSSPYSVAAANIQALASLRSFGIPGDDATLDRLLQAAGNN
VERAINNHFDARLALGPPLPVPYPRPPERKQAAAAGGCRETAAAAAAVAA
AAAPLANVVEIVEVDDSEDSSLFEVEQERRAAAAAATKMGGGGGGGRARE
TVKEQQQQQQQQQLQQQKCLHGAGPDCKACQHLSTSSLPSSPSSPSSWPK
CLGQRRVEGCYCLTRGGAVQAGEEVAVFLEAVSGGGNSSRSSSSSHSSSS
SSSSKKRRNSNTSNSSKKMKGQMGEKEGGEDNDDEEEEDGEDLDFGEKKK
KKETFTPNRTAAATATTGKGGGGGGGKGRGKVRNFSTISSSKKAAAAAGT
SVRFRSFGVEGGARIEGRLPVEIAAVLMPLLREHLIVVEATACHSIYSSE
FFTPLALRVRVSVTGVEFFRLSHSPPLSAVAGRSRGGGGGGGEGGDNGGE
GGVERGAVAIAASRLIHFLNSGKVDVVNQPAEEANESKKRRMMDSASSPA
PSRQTQTAAAAAAVAGATEAAEAAEREDGDVVDETQLDRLYRLNEEHIRA
LPPFPSPLPLLRRGVELRRYQRQALAWMLKREGGKEGWKEGGMHLEMQGG
KVGGKTEEEGEEKGGRAMLLETAAVAAKEAGKGGREGGKASVWLGEGLVK
TSAEMVGEQALHHPLWDRYYMAEVEGGRKGGREGGVRLVNPVPFYSNPYS
KVVQMERPVPPKECRGGILADDMGMGKTIMVLALLLTAKHHHLHPLLLPT
PPPPSSHSPRPSLPHWSSFPSPSLPSGTTR*
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Synonyms
Publications