NO29G00440, NO29G00440 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G00440 vs. NCBI_GenBank
Match: EWM21270.1 (snf2 family helicase [Nannochloropsis gaditana]) HSP 1 Score: 166.4 bits (420), Expect = 3.300e-37 Identity = 77/115 (66.96%), Postives = 89/115 (77.39%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRG-------GGRGLYGVVWGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKG 163 DVVLTTYGTLQ E EGGRG GV WGRV+LDEAHTIKN+GTEAF+AA+ LEA RRWALTGTPIQN LDDVF+LL FLRH+PW+DP+WW K+I++PF+ R G Sbjct: 10 DVVLTTYGTLQQEHVRWEGGRGXXXXXXXXXXXXXGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQGRAG 124
BLAST of NO29G00440 vs. NCBI_GenBank
Match: GAY01548.1 (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, putative [Pythium insidiosum]) HSP 1 Score: 166.4 bits (420), Expect = 3.300e-37 Identity = 92/215 (42.79%), Postives = 120/215 (55.81%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRGGGRGLYGVVWGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKGGREGTRGGELAVSCSSSSSSFSQNMSKWKVEVYDDAKGREEEADAAIDRLRNVLSPILLRRTKKSKDEQGNLILTLPKRDVRMVEVEFSPAERFFYDQLRERSKRDF 270 DVVLTTYG L SEF E L W RVILDEAH+IK R T F++ L +E RW LTGTP+QNGL D+F+LLCFLR+EPW P WW ++IA P + V SS + + A+ RL+ +L P+LLRRTK S+D GN ++ LP RDV++VE++FS ER FY + +RS+ +F Sbjct: 530 DVVLTTYGVLSSEF---ESSAKTSSWLLSADWHRVILDEAHSIKTRTTSYFRSCVALRSEHRWCLTGTPLQNGLGDLFSLLCFLRYEPWCRPSWWTRVIARP---------------MDVPSQSSEPGNTHAL--------------------ALARLQVILRPVLLRRTKLSRDADGNCLVQLPPRDVQIVELQFSAEERAFYQAVYDRSRAEF 706
BLAST of NO29G00440 vs. NCBI_GenBank
Match: CBJ29027.1 (DNA repair helicase rad5,16, putative [Ectocarpus siliculosus]) HSP 1 Score: 163.7 bits (413), Expect = 2.200e-36 Identity = 96/234 (41.03%), Postives = 121/234 (51.71%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRGGGRG---------------------LYGVVWGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKGGREGTRGGELAVSCSSSSSSFSQNMSKWKVEVYDDAKGREEEADA-AIDRLRNVLSPILLRRTKKSKDEQGNLILTLPKRDVRMVEVEFSPAERFFYDQLRERSK 267 DVVLTTYG L SE A E L GV W RVILDEAH+I+N TE +A RLEA++RWA+TGTPIQN LDD+ ALL FLRHEPW+D WW K+I+DP+K + DA A+ RL+ VL+PILLRRTK + D +G I+ LP + V +V ++ S ER FY+ L++RSK Sbjct: 581 DVVLTTYGVLSSEMAKHEADATARESTXXXXXXXXXXXXXXXXXXXXLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK---------------------------------------------DGDAEALRRLKTVLAPILLRRTKSTLDSRGRPIVELPPKTVEIVRLQLSAEEREFYEALKKRSK 769
BLAST of NO29G00440 vs. NCBI_GenBank
Match: XP_002902747.1 (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, putative [Phytophthora infestans T30-4] >EEY55917.1 DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, putative [Phytophthora infestans T30-4]) HSP 1 Score: 161.4 bits (407), Expect = 1.100e-35 Identity = 88/216 (40.74%), Postives = 121/216 (56.02%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRGGGRGLYGVV-WGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKGGREGTRGGELAVSCSSSSSSFSQNMSKWKVEVYDDAKGREEEADAAIDRLRNVLSPILLRRTKKSKDEQGNLILTLPKRDVRMVEVEFSPAERFFYDQLRERSKRDF 270 D+VLTTYG L +EF G GL W RVILDEAH+IKNR T FK+ L A RW LTGTPIQN LDD+F+LLCFL+++PW+ WW ++I P+ E DD A+ RL+ +L+P+LLRRTK S+D++GN+I+ LP + + +V++EFSP ER FY + ++S+ +F Sbjct: 484 DLVLTTYGVLSAEF--------GKNGLLTTTEWNRVILDEAHSIKNRSTGYFKSCSGLMATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPY-----------------------------------EDGDDVN--------ALGRLKAILTPVLLRRTKHSRDKRGNMIVKLPPKHIDLVKLEFSPDERAFYQAVFDKSRAEF 648
BLAST of NO29G00440 vs. NCBI_GenBank
Match: XP_022970287.1 (DNA repair protein RAD5A [Cucurbita maxima]) HSP 1 Score: 160.6 bits (405), Expect = 1.800e-35 Identity = 91/216 (42.13%), Postives = 118/216 (54.63%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRGGGRGLYGVVWGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKGGREGTRGGELAVSCSSSSSSFSQNMSKWKVEVYDDAKGREEEADAAIDRLRNVLSPILLRRTKKSKDEQGNLILTLPKRDVRMVEVEFSPAERFFYDQLRERSKRDFE 271 DVV+TTYG L SEF+A G GLY V W RV+LDEAHTIK+ ++ AA L A+RRW LTGTPIQN L+D+F+LL FLR EPW + WW KII PF EE + + ++++L PI+LRRTK SKD +G IL LP DV+++ E + AE+ FY+ L +RSK F+ Sbjct: 547 DVVITTYGVLASEFSAQNAEEG---GLYSVRWFRVVLDEAHTIKSSKSQVSLAATALAADRRWCLTGTPIQNNLEDIFSLLRFLRIEPWGNWAWWNKIIQKPF--------------------------------------------EEGDERVLKLVQSILKPIMLRRTKYSKDREGRPILVLPPADVQVMYCELTDAEKDFYEALFKRSKVKFD 715
BLAST of NO29G00440 vs. NCBI_GenBank
Match: XP_023518978.1 (DNA repair protein RAD5A [Cucurbita pepo subsp. pepo]) HSP 1 Score: 160.2 bits (404), Expect = 2.400e-35 Identity = 91/216 (42.13%), Postives = 118/216 (54.63%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRGGGRGLYGVVWGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKGGREGTRGGELAVSCSSSSSSFSQNMSKWKVEVYDDAKGREEEADAAIDRLRNVLSPILLRRTKKSKDEQGNLILTLPKRDVRMVEVEFSPAERFFYDQLRERSKRDFE 271 DVV+TTYG L SEF+A G GLY V W RV+LDEAHTIK+ ++ AA L A+RRW LTGTPIQN L+D+F+LL FLR EPW + WW KII PF EE + + ++++L PI+LRRTK SKD +G IL LP DV+++ E + AE+ FY+ L +RSK F+ Sbjct: 547 DVVVTTYGVLASEFSAQNAEEG---GLYSVRWFRVVLDEAHTIKSSKSQVSLAATALAADRRWCLTGTPIQNNLEDIFSLLRFLRIEPWGNWAWWNKIIQKPF--------------------------------------------EEGDERGLKLVQSILKPIMLRRTKYSKDREGRPILVLPPADVQVMYCELTDAEKDFYEALFKRSKVKFD 715
BLAST of NO29G00440 vs. NCBI_GenBank
Match: ETI54510.1 (hypothetical protein F443_02648 [Phytophthora parasitica P1569] >ETK94407.1 hypothetical protein L915_02530 [Phytophthora parasitica] >ETL47783.1 hypothetical protein L916_02502 [Phytophthora parasitica] >ETM00897.1 hypothetical protein L917_02436 [Phytophthora parasitica] >ETM54074.1 hypothetical protein L914_02525 [Phytophthora parasitica] >ETO83262.1 hypothetical protein F444_02649 [Phytophthora parasitica P1976] >ETP24341.1 hypothetical protein F441_02610 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 159.1 bits (401), Expect = 5.300e-35 Identity = 87/215 (40.47%), Postives = 119/215 (55.35%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRGGGRGLYGVVWGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKGGREGTRGGELAVSCSSSSSSFSQNMSKWKVEVYDDAKGREEEADAAIDRLRNVLSPILLRRTKKSKDEQGNLILTLPKRDVRMVEVEFSPAERFFYDQLRERSKRDF 270 D+VLTTYG L +E+ G L W RVILDEAH+IK R T FK+ L A RW LTGTPIQN LDD+F+LLCFL+++PW+ WW ++I P+ E DD A+ RL+ +L+PILLRRTK S+D+QGN+I+ LP + + +V++EFSP ER FY + ++S+ +F Sbjct: 558 DLVLTTYGVLSAEY-------GKDSPLTTTEWNRVILDEAHSIKTRTTGYFKSCSALVATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPY-----------------------------------EDGDDVN--------ALGRLKAILTPILLRRTKHSRDKQGNMIVKLPPKHIDLVKLEFSPDERTFYQAVFDKSRAEF 722
BLAST of NO29G00440 vs. NCBI_GenBank
Match: XP_008915946.1 (hypothetical protein PPTG_19285 [Phytophthora parasitica INRA-310] >ETM98708.1 hypothetical protein PPTG_19285 [Phytophthora parasitica INRA-310]) HSP 1 Score: 159.1 bits (401), Expect = 5.300e-35 Identity = 87/215 (40.47%), Postives = 119/215 (55.35%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRGGGRGLYGVVWGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKGGREGTRGGELAVSCSSSSSSFSQNMSKWKVEVYDDAKGREEEADAAIDRLRNVLSPILLRRTKKSKDEQGNLILTLPKRDVRMVEVEFSPAERFFYDQLRERSKRDF 270 D+VLTTYG L +E+ G L W RVILDEAH+IK R T FK+ L A RW LTGTPIQN LDD+F+LLCFL+++PW+ WW ++I P+ E DD A+ RL+ +L+PILLRRTK S+D+QGN+I+ LP + + +V++EFSP ER FY + ++S+ +F Sbjct: 558 DLVLTTYGVLSAEY-------GKDSPLTTTEWNRVILDEAHSIKTRTTGYFKSCSALVATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPY-----------------------------------EDGDDVN--------ALGRLKAILTPILLRRTKHSRDKQGNMIVKLPPKHIDLVKLEFSPDERTFYQAVFDKSRAEF 722
BLAST of NO29G00440 vs. NCBI_GenBank
Match: ETP52315.1 (hypothetical protein F442_02621 [Phytophthora parasitica P10297]) HSP 1 Score: 159.1 bits (401), Expect = 5.300e-35 Identity = 87/215 (40.47%), Postives = 119/215 (55.35%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRGGGRGLYGVVWGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKGGREGTRGGELAVSCSSSSSSFSQNMSKWKVEVYDDAKGREEEADAAIDRLRNVLSPILLRRTKKSKDEQGNLILTLPKRDVRMVEVEFSPAERFFYDQLRERSKRDF 270 D+VLTTYG L +E+ G L W RVILDEAH+IK R T FK+ L A RW LTGTPIQN LDD+F+LLCFL+++PW+ WW ++I P+ E DD A+ RL+ +L+PILLRRTK S+D+QGN+I+ LP + + +V++EFSP ER FY + ++S+ +F Sbjct: 558 DLVLTTYGVLSAEY-------GKDSPLTTTEWNRVILDEAHSIKTRTTGYFKSCSALVATHRWCLTGTPIQNTLDDMFSLLCFLQYQPWSRVAWWKRVITKPY-----------------------------------EDGDDVN--------ALGRLKAILTPILLRRTKHSRDKQGNMIVKLPPKHIDLVKLEFSPDERTFYQAVFDKSRAEF 722
BLAST of NO29G00440 vs. NCBI_GenBank
Match: XP_024575280.1 (dna repair protein swi snf-related matrix-associated actin-dependent regulator of [Plasmopara halstedii] >CEG38911.1 dna repair protein swi snf-related matrix-associated actin-dependent regulator of [Plasmopara halstedii]) HSP 1 Score: 159.1 bits (401), Expect = 5.300e-35 Identity = 86/215 (40.00%), Postives = 121/215 (56.28%), Query Frame = 0 Query: 55 DVVLTTYGTLQSEFAALEGGRGGGRGLYGVVWGRVILDEAHTIKNRGTEAFKAAYRLEAERRWALTGTPIQNGLDDVFALLCFLRHEPWNDPMWWAKIIADPFKSRKGGREGTRGGELAVSCSSSSSSFSQNMSKWKVEVYDDAKGREEEADAAIDRLRNVLSPILLRRTKKSKDEQGNLILTLPKRDVRMVEVEFSPAERFFYDQLRERSKRDF 270 D+VLTTYG L +E A + G L W R+ILDEAH+IKNR T FK L A RW LTGTPIQN LDD+FALLCFL+++PWN WW ++I P++ NM+ A+ RL+ +L+P+LLRRTK+S+D++GN+I+ LP + + +V++EFS ER FY + ++S+ +F Sbjct: 511 DLVLTTYGVLSAE--AEKNG-----VLTATKWNRIILDEAHSIKNRATGYFKVCSTLLARHRWCLTGTPIQNTLDDIFALLCFLQYQPWNRVAWWKRVIKKPYED------------------------GDNMN-------------------ALGRLKALLTPVLLRRTKQSRDKEGNIIVKLPPKHISLVQLEFSADERAFYQAVFDKSRAEF 675 The following BLAST results are available for this feature:
BLAST of NO29G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G00440 ID=NO29G00440|Name=NO29G00440|organism=Nannochloropsis oceanica|type=gene|length=2482bpback to top protein sequence of NO29G00440.1 >NO29G00440.1-protein ID=NO29G00440.1-protein|Name=NO29G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=732bpback to top Synonyms
Publications
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