NO29G00430, NO29G00430 (gene) Nannochloropsis oceanica

Overview
NameNO29G00430
Unique NameNO29G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1143
Alignment locationchr29:170568..171710 -

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Properties
Property NameValue
DescriptionSNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:170568..171710 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001650Helicase_C
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Homology
BLAST of NO29G00430 vs. NCBI_GenBank
Match: OQR97012.1 (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Achlya hypogyna])

HSP 1 Score: 171.0 bits (432), Expect = 6.300e-39
Identity = 89/160 (55.62%), Postives = 113/160 (70.62%), Query Frame = 0
Query:  182 PPKKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF 342
            P +K V+FSQWT ML+LV   L+      VR DG   Q+ R  VL EF+  D  +V+V+SL+AGGVGLNLT+A+VV+LLDPWWNPALEDQA+DRVHRLGQ  D + + ++ V+DTVE  +L +QE+KA +A + LA    G D D   GRLSL DL KFF
Sbjct:  834 PHRKVVVFSQWTHMLELVQTTLSQHGFSHVRFDGSLKQEDRERVLNEFSRGD-AQVLVISLKAGGVGLNLTAASVVILLDPWWNPALEDQAVDRVHRLGQESDVI-VKKYVVEDTVEDMILQLQERKATMASTVLATAKPGSDSD---GRLSLSDLLKFF 988          
BLAST of NO29G00430 vs. NCBI_GenBank
Match: XP_008615200.1 (hypothetical protein SDRG_10961 [Saprolegnia diclina VS20] >EQC31359.1 hypothetical protein SDRG_10961 [Saprolegnia diclina VS20])

HSP 1 Score: 168.7 bits (426), Expect = 3.100e-38
Identity = 93/167 (55.69%), Postives = 111/167 (66.47%), Query Frame = 0
Query:  175 EELPLSLPPKKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF 342
            E L  S P +K V+FSQWT MLDLV   L       VR DG   Q +R  VL EF S     V+V+SL+AGGVGLNLT+A+VV+LLDPWWNPALEDQAIDRVHRLGQ  D + + ++ V DTVE  +L +QE+KA +A + LA    G D D   GRL L DL KFF
Sbjct:  843 EALRASEPHRKVVVFSQWTHMLDLVGSTLNQHGFSTVRFDGSLKQDERERVLLEF-SRGSANVLVISLKAGGVGLNLTAASVVVLLDPWWNPALEDQAIDRVHRLGQEHDVI-VKKYVVDDTVEDMILQLQERKATMASTVLATSKPGADSD---GRLGLADLLKFF 1004          
BLAST of NO29G00430 vs. NCBI_GenBank
Match: XP_012196140.1 (hypothetical protein SPRG_02199 [Saprolegnia parasitica CBS 223.65] >KDO33392.1 hypothetical protein SPRG_02199 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 168.7 bits (426), Expect = 3.100e-38
Identity = 93/167 (55.69%), Postives = 111/167 (66.47%), Query Frame = 0
Query:  175 EELPLSLPPKKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF 342
            E L  S P +K V+FSQWT MLDLV   L       VR DG   Q +R  VL EF S     V+V+SL+AGGVGLNLT+A+VV+LLDPWWNPALEDQAIDRVHRLGQ  D + + ++ V DTVE  +L +QE+KA +A + LA    G D D   GRL L DL KFF
Sbjct:  845 EALRASEPHRKVVVFSQWTHMLDLVGSTLNQHGFSTVRFDGSLKQDERERVLSEF-SRGSANVLVISLKAGGVGLNLTAASVVVLLDPWWNPALEDQAIDRVHRLGQDHDVI-VKKYVVDDTVEDMILQLQERKATMASTVLATSKPGADSD---GRLGLADLLKFF 1006          
BLAST of NO29G00430 vs. NCBI_GenBank
Match: OQS03123.1 (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Thraustotheca clavata])

HSP 1 Score: 167.9 bits (424), Expect = 5.400e-38
Identity = 85/160 (53.12%), Postives = 113/160 (70.62%), Query Frame = 0
Query:  182 PPKKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF 342
            P +K V+FSQWT ML+LV   L+H     VR DG     +R  VL EF ++   +V+V+SL+AGGVGLNLT+A+VV++LDPWWNPALEDQA+DR+HRLGQ+ D + + ++ V DTVE  +L +Q +KA++A + LA    G D D   GRLSL DL KFF
Sbjct:  667 PHRKVVVFSQWTHMLELVENTLSHNGYSHVRFDGSLKHDERERVLNEF-NDGSTQVLVISLKAGGVGLNLTAASVVIILDPWWNPALEDQAVDRIHRLGQMHDVI-VKKYKVIDTVEDMILQLQARKASMASTVLATAKTGADND---GRLSLSDLLKFF 821          
BLAST of NO29G00430 vs. NCBI_GenBank
Match: XP_008861217.1 (hypothetical protein H310_00284 [Aphanomyces invadans] >ETW09806.1 hypothetical protein H310_00284 [Aphanomyces invadans])

HSP 1 Score: 167.2 bits (422), Expect = 9.100e-38
Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 0
Query:  184 KKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF 342
            +K V+FSQWT MLDLV   L        R DG   Q  R  VL  F SN +V+V+V+SL+AGGVGLNLT+A+VV+++DPWWNP +EDQAIDRVHRLGQ RD V + ++ V+DTVE  +L +Q++KA +A + LA    G + D   GRLSL DL KFF
Sbjct:  840 RKVVVFSQWTHMLDLVETTLQQHGYSHCRFDGSLKQDDRERVLHRFNSNPDVQVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRLGQTRD-VLVKKYIVEDTVEGMILQLQQRKATLASTVLATSKSGAEND---GRLSLADLLKFF 993          
BLAST of NO29G00430 vs. NCBI_GenBank
Match: GAY01548.1 (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, putative [Pythium insidiosum])

HSP 1 Score: 165.6 bits (418), Expect = 2.700e-37
Identity = 85/174 (48.85%), Postives = 117/174 (67.24%), Query Frame = 0
Query:  168 REDEDGKEELPLSLPPKKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF 342
            +E  D  E + +    +K V+FSQWT ML++V++ L  + I      G  +Q  R  VLR F+++++V V+V+SLRAGGVGLNLT A+VV+LLDPWWNP +EDQAIDRVHRLGQ RD V + R+ V++TVE  +L +Q++KA +AR  L      G  D    RLS++DL  FF
Sbjct:  886 QEIHDENERIEVPAQRRKVVVFSQWTHMLEMVAQLLRDRGIGHAVFHGSMAQDARERVLRRFSADNDVEVLVISLRAGGVGLNLTRASVVLLLDPWWNPGVEDQAIDRVHRLGQTRD-VLVRRYVVRETVEDMILQLQQRKARLARHVLVASNRSGTDDQSSDRLSMEDLLAFF 1058          
BLAST of NO29G00430 vs. NCBI_GenBank
Match: XP_024575280.1 (dna repair protein swi snf-related matrix-associated actin-dependent regulator of [Plasmopara halstedii] >CEG38911.1 dna repair protein swi snf-related matrix-associated actin-dependent regulator of [Plasmopara halstedii])

HSP 1 Score: 162.2 bits (409), Expect = 2.900e-36
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = 0
Query:  184 KKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF 342
            +K V+FSQWT MLD+VSR L        + DG  +Q+ R  VL +F ++  + V+V+SL+AGGVGLNLT A+VV+LLDPWWNP +E QA+DRVHRLGQ RD + + R+ +KDTVE  +L +Q++K  +A+  L       D+  +  R++LDDLR FF
Sbjct:  911 RKVVVFSQWTSMLDMVSRLLTRHSFSHCKFDGGLNQEARERVLTKFTNDPNIEVLVISLKAGGVGLNLTCASVVILLDPWWNPGVEKQAVDRVHRLGQTRDVI-VKRYVIKDTVEDMILQLQQRKELLAKHVLVVAKAHDDR--RSERINLDDLRTFF 1065          
BLAST of NO29G00430 vs. NCBI_GenBank
Match: XP_009533794.1 (hypothetical protein PHYSODRAFT_317996 [Phytophthora sojae] >EGZ11049.1 hypothetical protein PHYSODRAFT_317996 [Phytophthora sojae])

HSP 1 Score: 159.8 bits (403), Expect = 1.500e-35
Identity = 80/158 (50.63%), Postives = 108/158 (68.35%), Query Frame = 0
Query:  184 KKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF 342
            +K V+FSQWT MLD+VSR L          +G  +Q QR  VL +FA +  V V+V+SL+AGGVGLNLT A+VV+LLDPWWNP +EDQA+DRVHRLGQ +D + + R+ V DTVE  +L +Q++K  +A+  L       ++  +  RL+LDDLR FF
Sbjct:  902 RKVVVFSQWTSMLDMVSRLLQRHGFSHCTFNGALNQGQRERVLTKFAKDPSVEVLVISLKAGGVGLNLTCASVVILLDPWWNPGVEDQAVDRVHRLGQTQDVI-VKRYVVNDTVEDMILQLQQRKEKLAKHVLVVAKAHDER--RSERLNLDDLRSFF 1056          
BLAST of NO29G00430 vs. NCBI_GenBank
Match: XP_006652864.1 (PREDICTED: helicase-like transcription factor CHR28 [Oryza brachyantha])

HSP 1 Score: 159.8 bits (403), Expect = 1.500e-35
Identity = 88/199 (44.22%), Postives = 126/199 (63.32%), Query Frame = 0
Query:  144 DSVHCADKERRTKPPSMNVKDEEGREDEDGKEELPLSLPPKKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEG-RLSLDDLRKFF 342
            +S + + K R       ++ +       D  E  P  + P KA++FSQWTGMLDL+  +L + +I F RLDG  S   R   ++EF ++ EVRVM++SL+AG +GLN+ +A  V+++DPWWNP  EDQA+DR HR+GQ+R  V + R T+KDTVE ++L +QEKK  + +SA      GGDK G    RL+LDDL+  F
Sbjct:  872 ESSYISSKIRSATDILNSIVNTHALTGSDTIESNPSEVAPPKAIVFSQWTGMLDLLELSLDNYRIKFRRLDGAMSLNLREKAVKEFNTDPEVRVMLMSLKAGNLGLNMVAACHVIMIDPWWNPYAEDQAVDRAHRIGQIR-PVTVSRLTIKDTVEDRILALQEKKRKMVQSAF-----GGDKPGGNATRLTLDDLQYLF 1064          
BLAST of NO29G00430 vs. NCBI_GenBank
Match: ETI54510.1 (hypothetical protein F443_02648 [Phytophthora parasitica P1569] >ETK94407.1 hypothetical protein L915_02530 [Phytophthora parasitica] >ETL47783.1 hypothetical protein L916_02502 [Phytophthora parasitica] >ETM00897.1 hypothetical protein L917_02436 [Phytophthora parasitica] >ETM54074.1 hypothetical protein L914_02525 [Phytophthora parasitica] >ETO83262.1 hypothetical protein F444_02649 [Phytophthora parasitica P1976] >ETP24341.1 hypothetical protein F441_02610 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 159.5 bits (402), Expect = 1.900e-35
Identity = 79/158 (50.00%), Postives = 110/158 (69.62%), Query Frame = 0
Query:  184 KKAVIFSQWTGMLDLVSRALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF 342
            +K VIFSQWT MLD+VS+ L          +G  +Q+ R  VL +FA + +V V+V+SL+AGGVGLNLT A+VV+LLDPWWNP +E+QA+DRVHRLGQ +D + + R+ VKDTVE  +L +Q++K  +A+  L       ++  +  RL+LDDLR FF
Sbjct:  960 RKVVIFSQWTSMLDMVSQLLTRHGFTHCTFNGGLNQEARERVLTKFAKDPDVEVLVISLKAGGVGLNLTCASVVILLDPWWNPGVEEQAVDRVHRLGQTQDVI-VKRYVVKDTVEDMILQLQQRKEKLAKHVLVVAKAHDER--RSERLNLDDLRSFF 1114          
The following BLAST results are available for this feature:
BLAST of NO29G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR97012.16.300e-3955.63DNA repair protein RAD5, SWI/SNF-related matrix-as... [more]
XP_008615200.13.100e-3855.69hypothetical protein SDRG_10961 [Saprolegnia dicli... [more]
XP_012196140.13.100e-3855.69hypothetical protein SPRG_02199 [Saprolegnia paras... [more]
OQS03123.15.400e-3853.13DNA repair protein RAD5, SWI/SNF-related matrix-as... [more]
XP_008861217.19.100e-3854.43hypothetical protein H310_00284 [Aphanomyces invad... [more]
GAY01548.12.700e-3748.85DNA repair protein RAD5, SWI/SNF-related matrix-as... [more]
XP_024575280.12.900e-3649.37dna repair protein swi snf-related matrix-associat... [more]
XP_009533794.11.500e-3550.63hypothetical protein PHYSODRAFT_317996 [Phytophtho... [more]
XP_006652864.11.500e-3544.22PREDICTED: helicase-like transcription factor CHR2... [more]
ETI54510.11.900e-3550.00hypothetical protein F443_02648 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005142NSK005142Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00430.1NO29G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601145gene_8215Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00430.1NO29G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00430 ID=NO29G00430|Name=NO29G00430|organism=Nannochloropsis oceanica|type=gene|length=1143bp
ATGGTAGAAATCGACGACAGCGACGAAGATGAGGGAGGGAGGGAGGAAGA
AGAGCAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGG
TGGTGGTAGTGGAGGAGGAGGAGGGTGTAATTGAAGAAAAGGAAACACAA
TCTTCCTTTCCTCGTCCTCGCCCTCGACAGCGTCTTTCCCGCCCCTCCTC
CCTCCCTCCCTCCTCGTCCTCCTCCCTAAAACTGCAGCAACATCAGCAAC
CACAGCAGCAACAGCAGAACCGTTCCATCCTCCCTTCCTCCCCCGCTTCC
TCCCAACAGGCAGAGGCCTCCATCCAGGGTAGTGCTAAGCTGAGGCGACT
GATGGAGGAACTGGACCGCCTCCTCTTCTCTCCTTCCCCCTCTTCCTCCT
CCCTCTCCTCCTCCTCCTCCTCCCAAAAGGATTCGGTGCACTGTGCAGAT
AAGGAAAGGAGGACGAAGCCTCCTTCCATGAATGTCAAAGACGAAGAAGG
GAGGGAGGATGAGGACGGGAAGGAGGAACTTCCCCTATCCCTACCACCTA
AAAAAGCTGTCATTTTCTCTCAATGGACTGGCATGCTCGATTTGGTCTCG
CGGGCTTTGGCACACAAACAAATAATCTTCGTGCGGCTAGACGGGCGCAC
GAGCCAGCAGCAGCGTGGACATGTCCTGAGAGAATTTGCCTCAAACGATG
AAGTGCGCGTAATGGTTTTGAGCTTGAGGGCAGGAGGGGTGGGGTTGAAC
CTTACGAGTGCCAACGTGGTGATGCTGTTGGATCCGTGGTGgtgggtttc
aagacagggggggagcgaggggaggaagggaagaaaggaggaaaggaaca
acttcaagcgtactgactcgccaatgtttcgaccatccctcccatgtttt
ccccacagGAATCCTGCCTTAGAAGACCAAGCTATAGACCGAGTCCACCG
CCTTGGTCAACTCCGCGATACCGTGCACATTCTCCGCTTCACTGTCAAAG
ACACGGTGGAACAACAGATGTTAGTTGTCCAGGAAAAGAAGGCAGCCGTG
GCGCGAAGTGCCTTGGCGTGCGGGGCCGGGGGGGGAGACAAGGACGGGAA
GGAGGGGCGGTTGTCACTAGATGATTTGCGGAAGTTTTTTTAA
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protein sequence of NO29G00430.1

>NO29G00430.1-protein ID=NO29G00430.1-protein|Name=NO29G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MVEIDDSDEDEGGREEEEQKEEEEEEEEEEEEVVVVVEEEEGVIEEKETQ
SSFPRPRPRQRLSRPSSLPPSSSSSLKLQQHQQPQQQQQNRSILPSSPAS
SQQAEASIQGSAKLRRLMEELDRLLFSPSPSSSSLSSSSSSQKDSVHCAD
KERRTKPPSMNVKDEEGREDEDGKEELPLSLPPKKAVIFSQWTGMLDLVS
RALAHKQIIFVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLN
LTSANVVMLLDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQ
MLVVQEKKAAVARSALACGAGGGDKDGKEGRLSLDDLRKFF*
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Synonyms
Publications