NO29G00420, NO29G00420 (gene) Nannochloropsis oceanica

Overview
NameNO29G00420
Unique NameNO29G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2640
Alignment locationchr29:167346..169985 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:167346..169985 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G00420 vs. NCBI_GenBank
Match: EWM21268.1 (hypothetical protein Naga_100618g2 [Nannochloropsis gaditana])

HSP 1 Score: 162.2 bits (409), Expect = 3.300e-36
Identity = 91/181 (50.28%), Postives = 114/181 (62.98%), Query Frame = 0 
Query:  209 ERTFTGSFNWDHPTLPPLPTHPALPPSLDGLFPPSLPNALWQIRLVIQGAPSLIEENKEEVAARFKSLLDHILSTSSAPSPSSYDGAVRVDFTTLAAALGAGSKLRGSVDPLLKEAEEAPLPSSCAEAAAAAVLPTFMVVEGNGPVVKEVLAAALTSETFPSIFDVPSDYCGLKVSQIIMA 390
            ER+F GSF+W+ PTLPP P  P +P  LD LFP  L +A WQ+RLV+ G+  L EE+   VA RF++LLD  L         +Y G V        A+LGAG++LRG   P +K+ E  P P SC   +    LP+FMVV GN PV  E L AAL SETFPSIF  P+DYCG+KVS+I+MA
Sbjct:  321 ERSFVGSFDWNIPTLPPPPXLPTIPAPLDTLFPSPLSDAAWQVRLVLLGSAKLAEEDANLVAERFQALLDSRLEEVG----ETYQGEVAAKI----ASLGAGNRLRGKAIPGMKDLEAIPHPPSCVTES----LPSFMVVAGNAPVSSETLRAALDSETFPSIFAAPTDYCGVKVSEIVMA 489

HSP 2 Score: 65.9 bits (159), Expect = 3.300e-7
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0 
Query:   63 MRAIASLMLLLAPVAVSASAGSSLARLFGSDIGVPRDWLKALD 106
            MR   S +LLLAP+AVSASAGSS+ARLFGSD+ +PRDWL+ALD
Sbjct:    1 MRLYVSFVLLLAPIAVSASAGSSIARLFGSDLSMPRDWLRALD 43
The following BLAST results are available for this feature:
BLAST of NO29G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21268.13.300e-3650.28hypothetical protein Naga_100618g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005141NSK005141Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00420.1NO29G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601143gene_8214Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100618g2gene9156Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00420.1NO29G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00420 ID=NO29G00420|Name=NO29G00420|organism=Nannochloropsis oceanica|type=gene|length=2640bp
AGACACCCATGAAAGTGTGCCTCCGCAATATTTCAGCAGCAGGGTCTCAT
TTTTTTTTCATTCTTGCCTGTTTTTTGGGGTTTGTGGTGGTTTTATTGCC
TGCACTGCACACAAGCTCGATGGCCCATGTGGCTGCTAGTGACAGCTCTC
GTGCTCCCTGAATTCGGCTGCAACAGGCCTTCCACGTCTCCGTCTCATCA
CTCTGCTGAAGTAATGACAGTAAACCATATGTTGATCCCCACCTCGAACG
CGCATAAACCCGCCCGCCTCACACGACACACAGACCACCAACACGCATAC
ACCACACCAACCATGCGCGCTATCGCCTCTCTGATGCTGCTATTGGCGCC
CGTCGCCGTTTCCGCCTCCGCGGgtgagtgagagaaaatgtttctaatgt
tgtgtgtgtgtctcatcccctttgcttgccatgttggccatgttgcctgc
cctggccccatgccctctccccccacacacactcccctccctccactccc
ctccatgcatgttcctctgtctgcctgtcgtccaccccctaggagtgcaa
atgtcccgagacacctgaaccgtcagcctcatgacgagcccatcgcttgt
ctactaaaggtgctctcattcgcacaagttatacactcccaccgtatctc
atcacaccaaccatcaaccaaatactctccctctccctccctcccttttc
cttttgcctgtctatcccgccctcgaggccaagccaaagcgacggccgtt
tcacatctgcgctacctgtgattctctcacccacccatctctccaaccct
ccctttccctctttcacagGGTCCTCCCTCGCCCGCCTCTTCGGCTCCGA
CATAGGCGTGCCCCGCGACTGGCTCAAGGCCTTGGACGACGCCGAGAAAA
GCAACACCAACACCCACCGACAAACAGCCGACGCTGCTCCTGTTGCTGCC
GCTGCTTCTGTGGCTGCTGTCCCAGCTGCTGACGTGGAAGATCCCCGCAC
AATCCACCACTTCTCCTTTGATTGGTCCGGCATTCACGATCACCACAAGC
CCACCCTCCCTCCCTCCTTCGACGGGGACCATCCGTCTATCCCAGGGATC
CCTGCTGAACATCGGTACCTGGCGTGGACGAGTGAGAACGAGGAGAATGG
CGAGTTGGTGCGGCGGCAGCAGCAGGCCGGGAATGGCGAGGCTTTCGAAC
GCACCTTTACCGGTTCCTTCAATTGGGATCATCCCACCCTCCCACCCCTC
CCCACCCATCCCGCCCTCCCTCCCTCCCTCGATGGCCTCTTCCCTCCTTC
CCTCCCCAACGCCCTGTGGCAGATCCGTCTGGTCATCCAGGGAGCTCCCT
CCCTCATTGAAGAGAACAAGGAGGAGGTTGCTGCCCGGTTTAAGTCCTTA
CTGGACCACATCCTCTCCACCTCTTCCGCCCCTTCTCCCTCGTCCTACGA
CGGTGCCGTCCGCGTGGACTTCACCACCCTGGCTGCCGCATTGGGCGCCG
GGAGCAAACTCAGGGGAAGCGTTGATCCCCTCTTGAAGGAAGCGGAGGAA
GCTCCCCTCCCGTCCTCGTGCGCAGAAGCCGCAGCTGCGGCTGTCCTTCC
GACCTTCATGGTGGTGGAGGGCAATGGGCCAGTGGTCAAGGAAGTCCTGG
CAGCTGCTTTGACGAGCGAGACCTTTCCGTCTATTTTCGACGTGCCCTCA
GACTATTGCGGTCTGAAGGTCAGTCAGATCATCATGGCCTAGAAAGACGC
TTCTTCCGTTATTTTAAAATATGTTGATTTATTTATTGATCTGATCACAT
AAATGAACCTTTTTGTAAGGGTGAAAAGTCAAGAGATAAAAAAAGGTTTT
GAAAGATAGACTTGGAGGATGTGGGGGAAGAAGAAGAGAGAATGAGAGAC
GACATGGGCCAAAGGAGATGAGCGATGAAGCGCAGATGCGACTCGGGAAA
AAAAGAAAGCACGCGTGAGTCAGGAGGGGGGGAGAAAAACCAGGAGAACG
ACGAAAACGATAGAGTGAGTGAGGAAATGAGAATGAGAACAGCATACACA
TTGGCCCATGTGTGTGCCTCAAAGACACTCATTGACATTGTTCGTCACAG
CCGGAAAGCGGATTAACTAAATCTTTACATCAGGGCCAAAATGTCATTTT
CCCCTGTGATGAGTCATTTACTTATTCATCCATCCATTGACTTATTCATT
AATAGATTCATTTTCTTATCAAAGTCATAACAAGTGGATTGGTTGGAATG
ACAAGGGGGATGAAAATTGAACAGAGTGTGTATGTGAAGAAGAGGGACAG
GCAGGGAGACCGGAGTGAAAGAAAAATAAGAAGTTGCTTGAAATATTATT
CACTGCCTAAACAGTGAGGGGCGGAGGAAAGGAAGGGGTGGGGTTGGGAA
GGAGGGCATGGAAAAGAGGTCTCTAGTGGAAACCTCTTCCTCCTCCCCTT
CCGCCTCCCCTCCCCCTTTGGTAACCGACGTCGACCGAGATCACCATCTA
CCTTTTGGGGAAAGGGAGAGGAGGAAGAAGAAGAGCACGGGGGGTATGGG
TGAGGCGGCGGTGCGCAAAATGATCCCCACACTGGACGGAGAAGGGTATA
AGAAATTTAAAAAAAAAAACTAAATTCATACATGGAATAT
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protein sequence of NO29G00420.1

>NO29G00420.1-protein ID=NO29G00420.1-protein|Name=NO29G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MWLLVTALVLPEFGCNRPSTSPSHHSAEVMTVNHMLIPTSNAHKPARLTR
HTDHQHAYTTPTMRAIASLMLLLAPVAVSASAGSSLARLFGSDIGVPRDW
LKALDDAEKSNTNTHRQTADAAPVAAAASVAAVPAADVEDPRTIHHFSFD
WSGIHDHHKPTLPPSFDGDHPSIPGIPAEHRYLAWTSENEENGELVRRQQ
QAGNGEAFERTFTGSFNWDHPTLPPLPTHPALPPSLDGLFPPSLPNALWQ
IRLVIQGAPSLIEENKEEVAARFKSLLDHILSTSSAPSPSSYDGAVRVDF
TTLAAALGAGSKLRGSVDPLLKEAEEAPLPSSCAEAAAAAVLPTFMVVEG
NGPVVKEVLAAALTSETFPSIFDVPSDYCGLKVSQIIMA*
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Synonyms
Publications