NO29G00400, NO29G00400 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G00400 vs. NCBI_GenBank
Match: EWM21265.1 (Ribosomal protein/NADH dehydrogenase domain protein [Nannochloropsis gaditana]) HSP 1 Score: 213.8 bits (543), Expect = 3.000e-52 Identity = 98/119 (82.35%), Postives = 111/119 (93.28%), Query Frame = 0 Query: 1 MGVRPLFRVAKAQSTHLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPRFRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMHQHAHIINAKYEDEGKELDA 120 MGVRPL RV+KAQ+THLFRFIT V++SLNPWS+ RL+STREFWRAISVPR RKANPKCVINVETHN+K AP VA+KYLDGS+Q FEPE LDVVE+MSD+HQHAH+INAKYEDEGKEL+A Sbjct: 1 MGVRPLLRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELEA 119
BLAST of NO29G00400 vs. NCBI_GenBank
Match: OEU16805.1 (hypothetical protein FRACYDRAFT_186261 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 83.2 bits (204), Expect = 6.100e-13 Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 0 Query: 8 RVAKAQSTHLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPRFRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMHQHAHIINAKYEDEGKELD 119 + K S+ LF+++ VD+ NP+ D+R +S RE WR + R+ KANPK IN E AAP V K +D + + F+ H E+ D+H +N ++E GK LD Sbjct: 4 KFTKETSSRLFKYVKTVDIRFNPF-DNRTASAREIWRQMQSTRYYKANPKLKINTEVLGTAAAPEVVFKLIDDTVKRFDSRHYTANEIFFDVHLSLENLNNEFEMSGKSLD 113
BLAST of NO29G00400 vs. NCBI_GenBank
Match: XP_002290168.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91920.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 74.7 bits (182), Expect = 2.200e-10 Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 0 Query: 8 RVAKAQSTHLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPRFRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMHQHAHIINAKYEDEGKELD 119 +V K S+HL ++I VD+S NP+ D R S RE R I+V R+R+ANPK I + AP+V ++DG+ + F+ + EM+ D+ + A ++ +E EGK ++ Sbjct: 4 KVTKDMSSHLIKYIRTVDISFNPF-DMRTRSARELLRQINVDRYRRANPKLKIKTNILSTPHAPSVKFAFVDGTDKNFDSKEFLADEMLMDVWRTAMKMDDDFELEGKNVE 113
BLAST of NO29G00400 vs. NCBI_GenBank
Match: OWZ21508.1 (hypothetical protein PHMEG_0003923 [Phytophthora megakarya]) HSP 1 Score: 63.5 bits (153), Expect = 5.000e-7 Identity = 32/103 (31.07%), Postives = 57/103 (55.34%), Query Frame = 0 Query: 16 HLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPRFRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMHQHAHIINAKYEDEGKELD 119 ++ RF+ +VS + + D R + EF+R ++ + RK NPK IN ET PT+ + +++GS V E + +V E+ ++ H I +YE +GK ++ Sbjct: 5 NVVRFLKSANVSFSSF-DRRATGACEFYRQLTAEKTRKMNPKAEINQETTLTGTLPTIKLDFINGSKHVMEVPNKNVREIFEEVDFHCSQIETEYEKQGKSIE 106 The following BLAST results are available for this feature:
BLAST of NO29G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G00400 ID=NO29G00400|Name=NO29G00400|organism=Nannochloropsis oceanica|type=gene|length=992bpback to top protein sequence of NO29G00400.1 >NO29G00400.1-protein ID=NO29G00400.1-protein|Name=NO29G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bpback to top Synonyms
Publications
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