NO29G00380, NO29G00380 (gene) Nannochloropsis oceanica

Overview
NameNO29G00380
Unique NameNO29G00380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1176
Alignment locationchr29:157885..159060 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:157885..159060 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G00380 vs. NCBI_GenBank
Match: EWM21266.1 (hypothetical protein Naga_100538g4 [Nannochloropsis gaditana])

HSP 1 Score: 67.4 bits (163), Expect = 2.300e-8
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0 
Query:    1 MPAFLRPPRHTHDMKKGTGRKAPSLSHDSSAAVRRAQRKHETHVFLKEKEMMLKPLNPSALLRG 65
            MP   R P HT  +KKG GRK P L H  +A+ R+AQ  HE H F+KEK ++L PL P A ++G
Sbjct:   36 MPTLQRAPYHTRALKKGAGRKVPRLGHVVNASHRQAQSAHEIHAFIKEKALLLSPLAPVAAVKG 99
The following BLAST results are available for this feature:
BLAST of NO29G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21266.12.300e-850.00hypothetical protein Naga_100538g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00380.1NO29G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100538g4gene9161Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00380.1NO29G00380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00380 ID=NO29G00380|Name=NO29G00380|organism=Nannochloropsis oceanica|type=gene|length=1176bp
GCACAACCTCAAGCAATTTCCACCCAACGTGAAAAAGCCTTATGCCTGCC
TTTTTACGCCCGCCCCGCCACACGCACGACATGAAGAAGGgtatgcggcc
gaggtcgacagctaaacctggcggcattacttcctcctctttcccactat
atcccagcctctccgtttcccccttgacacatcacctttcgtgcagacaa
gagatacagttctatatcatctatggcgaataatttcgaacttatatcgt
cgcatcgcaccttactccttcccttcttttctctctccctccctccctcc
ctccctccctccctcctccctcatcagGTACTGGCAGGAAAGCCCCTTCT
CTCTCTCACGACTCCAGCGCCGCCGTCCGTCGGGCGCAACGCAAACATGA
GACACACGTCTTCTTGAAGGAGAAAGAGATGATGCTGAAACCTTTAAATC
CTTCTGCTTTGCTCCGAGGAGGAGGGCCGGGGAATGGAAGGGGGGGGGGA
AGGGGTCGGAAGAGTTGAGGGCATTGTTGCTGTGGTGGGCGATGGTGACG
AACGCGGGAAAATAAGCAAGAGGGGGAAGAGGGAGGATGAAAGGAATTGA
GTGGGACATGGACATGTGGTGGCGTTTTGCGTCGAGAAGTAGGGGAAGGG
AGAAGTCAGGAAGCAGGGAGGGAAGGAGGGAGGGAGGGAATGGAAGGGAG
GGAAAATCAAAAGACGGTGAGCGCAATCAAAATTACCACTTTGTGTGCAT
GTCCAGGTATATGCAAGGAATTTCTGTGTAAAAAAAGAGTGACCAAGACC
GGAAAAGACGAAAAGGCGGAGGAGGAGGAGGAGGAGGACAAGGAGGAGGA
TCAGGAGCAGCAACGACGAACCAAGACAGCAATAAAAGTGAGGGGAAGCA
GCAAGAGCTACATCCAGCTTGGGCTTTGGACATGTGCGTGTGTGTATATG
TGTGTCAATGGGGGTGTGTATGGGGATATCTTTGTTATGTGTGCATATGG
CGAGACAAACACGAAGAAAAAGAAGGAGGACGAGAAGAACGACAAGGAGG
AAATGGCGCGAAAGGAGAAAAAGGAGAACGAGCTCCTCTCCTCTTCCTTA
TTCTTTCTTAATCCTACAGAATTCAACTACCTACCCAGCCTTTCCAACCC
TCCCTCCCTCCCTCCCTCCCTCCCTC
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protein sequence of NO29G00380.1

>NO29G00380.1-protein ID=NO29G00380.1-protein|Name=NO29G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MPAFLRPPRHTHDMKKGTGRKAPSLSHDSSAAVRRAQRKHETHVFLKEKE
MMLKPLNPSALLRGGGPGNGRGGGRGRKS*
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Synonyms
Publications