NO29G00300, NO29G00300 (gene) Nannochloropsis oceanica

Overview
NameNO29G00300
Unique NameNO29G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4353
Alignment locationchr29:120029..124381 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:120029..124381 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007030Golgi organization
Homology
[Close]
BLAST of NO29G00300 vs. NCBI_GenBank
Match: EWM21254.1 (hypothetical protein Naga_100908g2 [Nannochloropsis gaditana])

HSP 1 Score: 295.4 bits (755), Expect = 5.100e-76
Identity = 194/332 (58.43%), Postives = 225/332 (67.77%), Query Frame = 0 
Query:  448 RQTQRREAELEGTIAELTASLAAKQRELETLKASFHSLGDNSQTTDLELHRLQQELQATQGALELERQHVVTLQREVRAQQHEMSSAAAAWREEKDAGEVKTRKQQREIEKLERGLEEXXXXXXXXXXXXXXXXXXXXXXGR-NEEMEGRLKVLSEQLVKKQGALDTALSSSYALEARLTASEERVRTLEGQLAMTDYDVESPADDVHSAGVRSRSTFVSXXXXXXXXXXXXXXXXXXXXXXFPGRRSAFPPLRPLSRLPFLQRHPAVLDVANGMDKVFVACIHYLRTFPWVRLLLMMYLFFMHIYVFSVVGWQAGRIETIHSDTGGSFLEP 779
            RQ QRREAELE T A+LTASLAAKQRE+ETLKASFH+LGD+ +  D+E  RLQQEL+A++ ALE+ERQHVV+LQRE+RAQQHE+S+A AAWREEK+A E + +K  RE E L + L E                      GR  EEME R++ LSEQLV+KQ ALD ALS+ Y                            SPADDV    VRSR              XXXXXXXXXXXXX  GRR A  PL+PLSRLPFL+ +PA  DVA+G+DKVF+A +HYLRTFPWVRL L+ YLF +HIYVFSVVGWQAGRIETIHSDTGGSFLEP
Sbjct:    2 RQAQRREAELESTTADLTASLAAKQREIETLKASFHALGDSREIVDMESQRLQQELEASRNALEMERQHVVSLQRELRAQQHELSAATAAWREEKEAQESRWQKGVREREGLAQALAE---ERQKREELERAGAQGGAQGGRVREEMEVRVQALSEQLVRKQEALDAALSNVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPADDVGPGAVRSRGHV--NAIHKPYPSXXXXXXXXXXXXXXXGRRVALAPLKPLSRLPFLRPYPAAADVADGVDKVFLASMHYLRTFPWVRLSLLAYLFLLHIYVFSVVGWQAGRIETIHSDTGGSFLEP 328
[Close]
BLAST of NO29G00300 vs. NCBI_GenBank
Match: EWM21251.1 (hypothetical protein Naga_101184g1 [Nannochloropsis gaditana])

HSP 1 Score: 90.1 bits (222), Expect = 3.200e-14
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 0 
Query:    1 MSQSIFNKLQSGLNYLDGAFKETMEGDEEGGEEELVEQRRQRQLRMDAAQLQAPFGS 58
            MSQS+FNKLQSGLNYLDGAFKETMEG+EE  EE L+EQRRQRQLRM A Q QA FGS
Sbjct:    1 MSQSLFNKLQSGLNYLDGAFKETMEGEEEATEEMLLEQRRQRQLRMTAVQQQAAFGS 57
[Close]
BLAST of NO29G00300 vs. NCBI_GenBank
Match: XP_005856183.1 (hypothetical protein NGA_0319100 [Nannochloropsis gaditana CCMP526] >EKU20163.1 hypothetical protein NGA_0319100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 88.6 bits (218), Expect = 9.400e-14
Identity = 90/247 (36.44%), Postives = 106/247 (42.91%), Query Frame = 0 
Query:    1 MSQSIFNKLQSGLNYLDGAFKETMEGDEEGGEEELVEQRRQRQLRMDAAQLQAPFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGDSSLSDGASSLLGMSSPLATGHVRRESGPFHTAVEHHXXXXRGGG----EEGVLPTLTLGSSGYDGLGGAV---EEEG 241
            MSQS+FNKLQSGLNYLDGAFKETMEG+EE  EE L+EQRRQRQLRM A Q QA FGS                                                                                           XXXXXXXXXX         + +  +++  + LLGMSSPLA G + RES   H +++         G    E+  LP+L LGSS YDGL GA+   EEEG
Sbjct:    1 MSQSLFNKLQSGLNYLDGAFKETMEGEEEATEEMLLEQRRQRQLRMTAVQQQAAFGS-----------------------------------ALYPSDSGTQESGFPPGMVAREEDAATGKGNEIPVKEEKGHEHLAGTARKPAPPAPXXXXXXXXXXGVHIRREGGSAEEEVAETPACLLGMSSPLAAGPLVRESEVHHASLKRSPSSSPPRGHVREEDNGLPSLALGSSAYDGLSGALAENEEEG 212
The following BLAST results are available for this feature:
BLAST of NO29G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21254.15.100e-7658.43hypothetical protein Naga_100908g2 [Nannochloropsi... [more]
EWM21251.13.200e-1482.46hypothetical protein Naga_101184g1 [Nannochloropsi... [more]
XP_005856183.19.400e-1436.44hypothetical protein NGA_0319100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005126NSK005126Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00300.1NO29G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO29G00300.2NO29G00300.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641585gene_8198Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100908g2gene9170Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00300.1NO29G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO29G00300.2NO29G00300.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00300 ID=NO29G00300|Name=NO29G00300|organism=Nannochloropsis oceanica|type=gene|length=4353bp
CCCCAGACCAACTCAAAAGCCCCAGCACGCATGTCGCAGTCCATTTTCAA
CAAGCTGCAATCGGGTTTGAATTACTTGGACGGGGCCTTCAAAGAAACCA
TGGAAGGGGATGAGGAAGGGGGTGAAGAGGAGTTGGTTGAACAGCGGCGG
CAGgtacgacggccattcgggagggaaaggaagggagggcgaatgtgata
ggacttgaggaggagagatcggagaacggaatgtgacggccagagtggca
atgggaagaaggcatgctcgcaataatgtgcttcttcgatgccttccctt
tcctcattcaattctctttaaaaccagCGTCAACTCCGCATGGATGCCGC
GCAGCTCCAGGCGCCGTTTGGCAGTGCCTTGGCCTCCTCCTCCTCCTCCT
CCTCCTACTCTCCCTATCCTTCCACCTCTGGTCATGGGGCACAGGCAGGA
GGAGCAGGACAAGATCGAGGTATCGGGTCGGAGGAAGACACGGAGGGGGA
AGAGGAGGAAGGGAGAGGGGGCAAGATGAGGGCATACGGACGATCACAGC
CGACGAAGCAGCGGGAGAAAGAAAAAACGCAGGGAAGACCTTCCTCTTCT
TCTATCTCTCCTTCCTCGGCCGCCGTTGTGATGAAGGAGGAGGAGGAAGA
GGAGAAGGAAGAGGAAGGAAGGGCTGTGGCGCCCTATCCCCTTGCTGGTG
CTTCTGCTGGTGATTCTTCGCTTTCTGACGGTGCCTCGTCACTACTCGGT
ATGTCCTCTCCGTTGGCCACTGGACACGTGCGGAGGGAGAGTGGGgtaag
atgaggaggagggagggagggagggagggagggagggagggaggggaacg
agcccatgacaagaaatttcgctcacgtgtgccaaaccaaaccctccctc
cctccctccctccctccccctacctctctgactttgtcctgcagCCGTTT
CACACTGCCGTTGAGCACCATCACGCGTCTTCGCGAGGAGGAGGAGAGGA
AGGGGTGCTGCCGACACTCACGTTGGGAAGCAGTGGATACGACGGCCTAG
GGGGCGCTGTTGAGGAAGAGGGGAGgtaggtggaggaggggaagggaggg
agagagggagggagggagggagggagtgaaatcactgacttatcctcgat
tttccccacatccattcatcgacccccacagCACATCGCCTACAACCAAC
CCCCCCTCTCCCTCTCCCCCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCC
CACTCGGCGGGGCTCTGCCACTGCTGCTGCTGGCGCCCATCGGGCCTCCC
TCTCCTCCTCGTCCCTCTCCCCGCCCTCCGCGGGCAAGGGTGACGTGGAC
ACCTCCAAGCTCTTGAAGCAACTGCGGAAGGAGgtagagagggaggaagg
gaggaagggaggaagggagggtaggagggagggaggaagaggtatgacga
tgggaagccaatgtgctgctttcttatgtctctccctccctcccccactc
cctcagGTGAAGCTTCTTAACGCGGAAAACAGTCACCTCGAGGCCTCCCT
TCAGCACCAAACCAAAGAGCTTCACGCGGCCGCCGAGGCCCTCGCTCACT
TGCACAGgcacgtctccctccctccctccctccctttctccctccctccc
tttccccctccttcccgttctccctccctccctccttctctccctctctt
ccttgcttcgttgcctccaaggacacacgactggcaaccctttctctcac
acccctccctccctccctccctccctccctccctcccccccagCAAGGCC
GCCGCGCGTGAAGGCGAGCTGTTGGACGAGGTGGAGGAAGTGCAGAAAGT
CAAGAGGGTGGACAAACATCAATTCAGCCAAGTGCTAGCTCAAAAAGgtg
ccccctccctccctccttcccttcctccctccttccgtccttcctttcct
cagagggagtctctccttcctcgctccctccctctctcccttcttccttc
catccctccccagagggagtctctctcctctctcccttcctcctatcttg
gaggaaactgtccaacaagaaggacaagtagggaggaaagcaatgacccg
ctttgagtcaccacacctccctccctccctcccttcctccctcagATGCG
GCCCTCCGTGAGATGGAAAGCCAGCTGCTCCAGCTTGAGACATTGAGGAA
GGAGAGGCAGGACTGGAGGGAGGAGAAGGATACGCTGAAAGAGGAGCTCG
AAATGGCCCGCTCGgtacgcaccctccctccctccttccctccctccctc
tccgacgatccatctcccttgcccttctagacttatccctccctccctcc
ctccctccctcctcagAACCAGGAGCGAGGGGTAGAAGGGCTACGGCAAG
AATTACGGGAAGCTCAAGGTGCCCTGGACGAGGCGAAATTACAGCATAGC
GCGTGGGCACGACAAACACAGCGACGAGAGGCCGAgtgagtgagggggga
gggaaggccgtcttatgtcacccgtccaacaaggaggggaaggaaagaaa
gagggaggaagggagggagggagggagggagggagggcagtactcgtgac
tcactttcttgtgatcttctgccacccatagACTGGAAGGCACTATAGCC
GAGCTCACCGCCTCCTTAGCCGCGAAGCAACGgtacgttcttcctttcct
cctcccccccctcccttctaccctccccctcagctatcctccctccctcc
ccccctccctccctccctccttcagGGAGTTGGAGACCCTTAAAGCCTCC
TTCCACTCGTTGGGCGACAACAGCCAGACGACCGACTTAGAACTGCACAG
gtagggagggagagcgagagggagggaggaaaagagggagggaggacgag
aaaatggctcagctagtcgatgcttccctccctcctttcctccctccctc
cctcagGCTGCAGCAAGAGCTTCAAGCCACGCAAGGCGCACTTGAGCTCG
AACGACAGCATGTAGTCACCCTGCAAAGAGAGgtatgtgctccctgcctc
cctccttccttcccttcctccctcccttcctccctcccttcctccctccc
ttcctccctccctccctctcaccctttcctcatttccacccttccctccc
tccttccctccctccctccctccttccctccctccttcccttccttgaca
gGTTCGCGCGCAGCAGCACGAGATGTCGTCTGCAGCTGCGGCGTGGAGGG
AGGAGAAGGATGCCGGGGAGGTTAAGACCCGGAAGCAACAGAGGGAGATT
GAAAAGCTGGAGAGAGGGCTAGAGGAGGAGAGGCTGAAGAGGGAGGAGGC
TGAGAGAGGGGGAGGCGGTGGCGGAGGAGAAGGGAGGAAGGAGGGAAGGA
ATGAGGAGATGGAAGGCCGACTGAAAGTGgtgagggggagggaaggaggg
caagggaggaagggacggacggacggacggacggacggaggaggacgacg
agggggctcatgtatgcacgctggaattcaaaagaccgttactcaacgct
catctttcctctcgccctccctccctcattttcttcttccctcctttcct
tcctccctccctccctccctccctcggtagCTCTCGGAGCAGCTGGTGAA
GAAGCAAGGAGCGCTGGACACAGCCCTCTCATCCTCCTACGCCCTCGAGG
CGCGTCTCACGGCGTCGGAAGAGAGAGTCAGGACGCTAGAAGGACAGCTG
GCCATGACGGACTATGATGTGGAGAGTCCGGCAGgtaggcagggaggagg
gagggagggagggagggagggagggagggagggggggactaaaggagata
gcgggaggctcctgactgttacgtttcttcagctgtttgtctgactatcc
ttttcgccgcacagATGACGTGCACAGCGCCGGTGTCCGTAGCCGTAGCA
CCTTCGTCTCCTCCACCAAGCCGTCCTCTTCCTCCTCCTCCTTCACCCTC
CTCCCTCCCTCTTCTTCCTCCTCTACCTTCCCGGGGCGTCGTTCCGCCTT
CCCCCCCCTGCGGCCTCTTTCCCGCCTGCCATTCCTCCAACGGCACCCTG
CCGTGCTCGACGTTGCAAATGGTATGGATAAGGTGTTTGTCGCATGCATC
CATTATCTTCGGACGTTCCCGTGGGTGCGTCTGCTCTTGATGATGTACTT
GTTTTTCATGCATATCTACGTGTTCTCGGTGGTTGGATGGCAGGCAGGGA
GGATTGAGACGATTCATTCGGATACGGGAGGGTCGTTCTTGGAGCCTGTG
AAGGGCGAGTAACGAAAAGGAAGGAAAGACAACTGAACTGCGGAAGATAG
GAG
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protein sequence of NO29G00300.1

>NO29G00300.1-protein ID=NO29G00300.1-protein|Name=NO29G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=783bp
MSQSIFNKLQSGLNYLDGAFKETMEGDEEGGEEELVEQRRQRQLRMDAAQ
LQAPFGSALASSSSSSSYSPYPSTSGHGAQAGGAGQDRGIGSEEDTEGEE
EEGRGGKMRAYGRSQPTKQREKEKTQGRPSSSSISPSSAAVVMKEEEEEE
KEEEGRAVAPYPLAGASAGDSSLSDGASSLLGMSSPLATGHVRRESGPFH
TAVEHHHASSRGGGEEGVLPTLTLGSSGYDGLGGAVEEEGSTSPTTNPPS
PSPPLPPSLPPSLPTRRGSATAAAGAHRASLSSSSLSPPSAGKGDVDTSK
LLKQLRKEVKLLNAENSHLEASLQHQTKELHAAAEALAHLHSKAAAREGE
LLDEVEEVQKVKRVDKHQFSQVLAQKDAALREMESQLLQLETLRKERQDW
REEKDTLKEELEMARSNQERGVEGLRQELREAQGALDEAKLQHSAWARQT
QRREAELEGTIAELTASLAAKQRELETLKASFHSLGDNSQTTDLELHRLQ
QELQATQGALELERQHVVTLQREVRAQQHEMSSAAAAWREEKDAGEVKTR
KQQREIEKLERGLEEERLKREEAERGGGGGGGEGRKEGRNEEMEGRLKVL
SEQLVKKQGALDTALSSSYALEARLTASEERVRTLEGQLAMTDYDVESPA
DDVHSAGVRSRSTFVSSTKPSSSSSSFTLLPPSSSSSTFPGRRSAFPPLR
PLSRLPFLQRHPAVLDVANGMDKVFVACIHYLRTFPWVRLLLMMYLFFMH
IYVFSVVGWQAGRIETIHSDTGGSFLEPVKGE*
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protein sequence of NO29G00300.2

>NO29G00300.2-protein ID=NO29G00300.2-protein|Name=NO29G00300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp
MDAAQLQAPFGSALASSSSSSSYSPYPSTSGHGAQAGGAGQDRGIGSEED
TEGEEEEGRGGKMRAYGRSQPTKQREKEKTQGRPSSSSISPSSAAVVMKE
EEEEEKEEEGRAVAPYPLAGASAGDSSLSDGASSLLGMSSPLATGHVRRE
SGPFHTAVEHHHASSRGGGEEGVLPTLTLGSSGYDGLGGAVEEEGSTSPT
TNPPSPSPPLPPSLPPSLPTRRGSATAAAGAHRASLSSSSLSPPSAGKGD
VDTSKLLKQLRKEVKLLNAENSHLEASLQHQTKELHAAAEALAHLHSKAA
AREGELLDEVEEVQKVKRVDKHQFSQVLAQKDAALREMESQLLQLETLRK
ERQDWREEKDTLKEELEMARSNQERGVEGLRQELREAQGALDEAKLQHSA
WARQTQRREAELEGTIAELTASLAAKQRELETLKASFHSLGDNSQTTDLE
LHRLQQELQATQGALELERQHVVTLQREVRAQQHEMSSAAAAWREEKDAG
EVKTRKQQREIEKLERGLEEERLKREEAERGGGGGGGEGRKEGRNEEMEG
RLKVLSEQLVKKQGALDTALSSSYALEARLTASEERVRTLEGQLAMTDYD
VESPADDVHSAGVRSRSTFVSSTKPSSSSSSFTLLPPSSSSSTFPGRRSA
FPPLRPLSRLPFLQRHPAVLDVANGMDKVFVACIHYLRTFPWVRLLLMMY
LFFMHIYVFSVVGWQAGRIETIHSDTGGSFLEPVKGE*
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Synonyms
Publications