NO29G00290, NO29G00290 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G00290 vs. NCBI_GenBank
Match: EWM21249.1 (dna mismatch repair protein Msh4 putative, partial [Nannochloropsis gaditana]) HSP 1 Score: 336.7 bits (862), Expect = 9.700e-89 Identity = 184/252 (73.02%), Postives = 203/252 (80.56%), Query Frame = 0 Query: 132 SFVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAPGVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFLEGKNQFAPS---SSSPAHKKARSSLSSAASLSAPARAVLVACEGKEQPQQALKALGRDFADLPLDTLTEASVVVSKLEEIVDGMKGKVPQ 381 S+VP D MELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYI+R L APCLFATHFHELTALE KAPGVRNLHVSA ITMLY+V PGPCL+SYGIHVARMA FPASVIEEA+ KAKELE L+ K S SSS KK R SLS+ SLS A+ VL EG E ALK LGR FA+LP+DTL +A+VVV ++E++V+ ++ KV Q Sbjct: 389 SYVPVDAMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIIRHLQAPCLFATHFHELTALEQKAPGVRNLHVSALAGADKITMLYQVEPGPCLESYGIHVARMARFPASVIEEASVKAKELESLDSKGNCTSSSFASSSSPLKKPRFSLST--SLSDAAQNVLGRSEGNEVALSALKGLGRTFAELPIDTLVDAAVVVQRMEDMVESVRMKVSQ 638
BLAST of NO29G00290 vs. NCBI_GenBank
Match: XP_009495010.1 (hypothetical protein H696_02835 [Fonticula alba] >KCV70494.1 hypothetical protein H696_02835 [Fonticula alba]) HSP 1 Score: 219.5 bits (558), Expect = 1.700e-53 Identity = 111/166 (66.87%), Postives = 129/166 (77.71%), Query Frame = 0 Query: 133 FVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAPGVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFLEGKNQ 299 FVP ++PV DA+LARVGAGDA +G+STFMAEMLE ++ILQ+AT SL+I+DELGRGTST+DGFGLAWAISE+I R LGA CLFATHFHELTAL + P VRN HVSA T GSIT+LY V+PG C S+GIHVA MA FPA V+ A KA ELE G N+ Sbjct: 751 FVPCSFAQVPVRDAILARVGAGDAQLKGISTFMAEMLETASILQSATSESLIIVDELGRGTSTYDGFGLAWAISEHIARDLGAFCLFATHFHELTALADELPNVRNFHVSAYTGHGSITLLYRVQPGFCDQSFGIHVAEMAKFPAHVVALAKRKASELEDFGGHNE 916
BLAST of NO29G00290 vs. NCBI_GenBank
Match: XP_009517071.1 (hypothetical protein PHYSODRAFT_261139 [Phytophthora sojae] >EGZ29796.1 hypothetical protein PHYSODRAFT_261139 [Phytophthora sojae]) HSP 1 Score: 213.8 bits (543), Expect = 9.500e-52 Identity = 124/235 (52.77%), Postives = 149/235 (63.40%), Query Frame = 0 Query: 132 SFVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAP-GVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFLEGKNQFAPSSSSPAHKKARSSLSSAASLSAPARAVLVACEGKEQPQQALKALGRDFADLPLDTLTEASVVVS 366 SFVPA+V LPV D +L RVGAGD QRGVSTFM EMLEAS IL AT SL+IIDELGRGTST+DGFGLAWAISEY++ + + CLFATHFHELTAL+ + P G N HV+A + ITM+Y+VR GPC++S+G+HVA MA FPASVIE A K++ELE E + SS SAA S P + + K F LPLD L A V+ + Sbjct: 588 SFVPAEVARLPVFDKLLVRVGAGDLQQRGVSTFMLEMLEASAILHKATERSLVIIDELGRGTSTYDGFGLAWAISEYLLSKARSMCLFATHFHELTALKQEHPQGFANKHVTAVASDREITMVYQVRDGPCMESFGVHVASMAGFPASVIECARRKSQELEGFE----------RAVGSQGTSSKRSAADASLPENG-----QSPTKKTALTKVFLSSFVALPLDKLAPAKVIAA 807
BLAST of NO29G00290 vs. NCBI_GenBank
Match: XP_020650426.1 (DNA mismatch repair protein Msh2 [Pogona vitticeps]) HSP 1 Score: 213.8 bits (543), Expect = 9.500e-52 Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = 0 Query: 133 FVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAPGVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFLE--GKNQFAPSSSSPAHKK 311 FVP + E+ +VD++LARVGAGD+ +GVSTFMAEMLE S+IL+ AT +SL+IIDELGRGTST+DGFGLAWAISEYI ++GA C+FATHFHELTAL + P V NLHV+A T+ ++TMLY V+ G C S+GIHVA MA FP VIE A +KA ELE + GK + A PA K+ Sbjct: 783 FVPCESAEVTIVDSILARVGAGDSQLKGVSTFMAEMLETSSILRAATENSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALADQVPTVNNLHVTALTSEDTLTMLYRVKKGACDQSFGIHVAEMAAFPKHVIESAKSKALELEEFQDIGKQEEAEEDEEPAAKR 962
BLAST of NO29G00290 vs. NCBI_GenBank
Match: XP_015283162.1 (PREDICTED: DNA mismatch repair protein Msh2 [Gekko japonicus]) HSP 1 Score: 213.4 bits (542), Expect = 1.200e-51 Identity = 109/178 (61.24%), Postives = 134/178 (75.28%), Query Frame = 0 Query: 133 FVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAPGVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFLEGKNQFAPSSSSPAHKK 311 FVP D E+ +VD++LARVGAGD+ +GVSTFMAEMLE S+IL++AT +SL+IIDELGRGTST+DGFGLAWAISEYI ++GA C+FATHFHELTAL + P V NLHV+A T S+TMLY V+ G C S+GIHVA +A FP VIE A AKA ELE + + + PA K+ Sbjct: 694 FVPCDSAEVSIVDSILARVGAGDSQLKGVSTFMAEMLETSSILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALADQVPSVNNLHVTALTTEDSLTMLYRVKKGFCDQSFGIHVAELAAFPQHVIENAKAKALELEEFQHTGKPQEADEEPAAKR 871
BLAST of NO29G00290 vs. NCBI_GenBank
Match: XP_018431809.1 (PREDICTED: DNA mismatch repair protein Msh2 [Nanorana parkeri]) HSP 1 Score: 213.4 bits (542), Expect = 1.200e-51 Identity = 117/231 (50.65%), Postives = 150/231 (64.94%), Query Frame = 0 Query: 132 SFVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAPGVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFLEGKNQFAPSSSSPAHKKARSSLSSAASLSAPARAVLVACEGKEQPQQALKALGRDFADLPLDTLTEASV 363 SFVP D E+ +VD +LARVGAGD+ +GVSTFMAEMLE ++IL++AT +SL+IIDELGRGTST+DGFGLAWAISEYI ++ A CLFATHFHELTAL + P V NLHV+A T ++TMLY V+ G C S+GIHVA +A+FP VIE A AKA ELE + A S PA K+ C+ KE+ ++ ++ LPL ++E + Sbjct: 690 SFVPCDFAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYISTKIRAFCLFATHFHELTALADQVPTVNNLHVTALTTDDTLTMLYRVKKGVCDQSFGIHVAELANFPKHVIENAKAKALELEEFQFVGASAESEDEPACKR--------------------RCKEKEEGEKIIQDFLTKVKALPLTEMSEQEI 900
BLAST of NO29G00290 vs. NCBI_GenBank
Match: XP_011679316.1 (PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2 [Strongylocentrotus purpuratus]) HSP 1 Score: 213.0 bits (541), Expect = 1.600e-51 Identity = 122/249 (49.00%), Postives = 161/249 (64.66%), Query Frame = 0 Query: 133 FVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAPGVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFLEGKNQFAPSSSSPAHKKARSSLSSAASLSAPARAVLVACEGKEQPQQALKALGRDFAD----LPLDTLTEASVVVSKLEEIVDGMKGK 378 FVP D E+ +VD +LARVGAGD +GVSTFMAEMLE ++IL++AT +SL+IIDELGRGTST+DGFGLAWAISEYI ++ CLFATHFHELTAL P V NLHV+A T+ G +T+LY+V+PG C S+GIHVA +AHFP VI+ A KA ELE + + S+AAS+ P + + +Q +A+ +DF LPLD L+E ++SKL+ + ++ K Sbjct: 673 FVPCDTAEISIVDCILARVGAGDCQLKGVSTFMAEMLETASILRSATSNSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGFCLFATHFHELTALADVIPTVNNLHVTALTSDGQLTLLYKVKPGVCDQSFGIHVAELAHFPQKVIDFAREKAAELEDFQS-----------------IASSAAASMEGPDEP---TAKKRRVEKQEGEAIIQDFVSKVKLLPLDDLSEDD-IMSKLQSLKAEVQAK 900
BLAST of NO29G00290 vs. NCBI_GenBank
Match: XP_008100910.1 (PREDICTED: DNA mismatch repair protein Msh2 [Anolis carolinensis]) HSP 1 Score: 212.2 bits (539), Expect = 2.800e-51 Identity = 112/184 (60.87%), Postives = 135/184 (73.37%), Query Frame = 0 Query: 133 FVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAPGVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFL------EGKNQFAPSSSSPAHKK 311 FVP D ++ +VD +LARVGAGD+ +GVSTFMAEMLE S+IL+TAT +SL+IIDELGRGTST+DGFGLAWAISEYI ++GA C+FATHFHELTAL+ + P V NLHV+A T ++TMLY V+ G C S+GIHVA +A FP VIE A AKA ELE EGK + PA KK Sbjct: 710 FVPCDSADITIVDCILARVGAGDSQLKGVSTFMAEMLETSSILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALDEEIPTVNNLHVTALTTDDTLTMLYRVKKGVCDQSFGIHVAELAAFPKHVIENAKAKALELEEFQSIGNPEGKEE--DGDGEPAAKK 891
BLAST of NO29G00290 vs. NCBI_GenBank
Match: XP_020387050.1 (DNA mismatch repair protein Msh2 [Rhincodon typus] >XP_020387051.1 DNA mismatch repair protein Msh2 [Rhincodon typus]) HSP 1 Score: 211.8 bits (538), Expect = 3.600e-51 Identity = 108/180 (60.00%), Postives = 132/180 (73.33%), Query Frame = 0 Query: 133 FVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAPGVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFLEGKNQFAPSSSSPAHKKAR 313 FVP D E+ +VD +LARVGAGD+ +GVSTFMAEMLE ++IL++AT HSL+IIDELGRGTST+DGFGLAWAISEYI ++ A C+FATHFHELTAL + P V NLHV+A T ++TMLY V+ G C S+GIHVA +A FP VI+ A KA ELE + S PA KK+R Sbjct: 344 FVPCDSAEISIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATEHSLIIIDELGRGTSTYDGFGLAWAISEYISTKICAFCMFATHFHELTALADQVPTVNNLHVTALTTDETLTMLYRVKKGVCDQSFGIHVAELAQFPKHVIQSAKDKAMELEEFQNIGNSEDSEEGPAAKKSR 523
BLAST of NO29G00290 vs. NCBI_GenBank
Match: XP_020620073.1 (DNA mismatch repair protein Msh2-like [Orbicella faveolata]) HSP 1 Score: 211.8 bits (538), Expect = 3.600e-51 Identity = 117/241 (48.55%), Postives = 162/241 (67.22%), Query Frame = 0 Query: 133 FVPADVMELPVVDAVLARVGAGDAAQRGVSTFMAEMLEASTILQTATPHSLLIIDELGRGTSTFDGFGLAWAISEYIVRRLGAPCLFATHFHELTALEHKAPGVRNLHVSATTAPGSITMLYEVRPGPCLDSYGIHVARMAHFPASVIEEATAKAKELEFLEGKNQFAPSSSSPAHKKARSSLSSAASLSAPARAVLVACEGKEQPQQALKALGRDFADLPLDTLTEASVV--VSKLEEIV 372 FVP E+ + D +LARVG+GD+ +GVSTFM+EMLE ++IL++AT +SL+IIDELGRGTST+DGFGLAWAIS+YI ++ CLFATHFHELTAL + VRNLHV+A T+ G++T+LY+V+PG C S+GIHVA +AHFP SVI+ A KA ELE +G + + + + ++PA+ +A K+ ++ +K A LP++T+TE VSKL+E V Sbjct: 933 FVPCSSAEISITDCILARVGSGDSQLKGVSTFMSEMLETASILRSATENSLIIIDELGRGTSTYDGFGLAWAISQYIATKIKCFCLFATHFHELTALADEVTTVRNLHVTAMTSSGTLTLLYKVKPGVCDQSFGIHVAELAHFPTSVIDFARQKAAELEDFQGST-----------AQLGDGVLDSETGTSPAKRRRLA---KQDGEEIIKEFLGQVAKLPVETMTEKQTACEVSKLKEQV 1159 The following BLAST results are available for this feature:
BLAST of NO29G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G00290 ID=NO29G00290|Name=NO29G00290|organism=Nannochloropsis oceanica|type=gene|length=2709bpback to top protein sequence of NO29G00290.2 >NO29G00290.2-protein ID=NO29G00290.2-protein|Name=NO29G00290.2|organism=Nannochloropsis oceanica|type=polypeptide|length=393bpback to top protein sequence of NO29G00290.1 >NO29G00290.1-protein ID=NO29G00290.1-protein|Name=NO29G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bpback to top Synonyms
Publications
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