NO29G00230, NO29G00230 (gene) Nannochloropsis oceanica

Overview
NameNO29G00230
Unique NameNO29G00230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2739
Alignment locationchr29:88355..91093 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:88355..91093 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G00230 vs. NCBI_GenBank
Match: EWM21241.1 (hypothetical protein Naga_101897g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-14
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = 0 
Query:  371 SHTIASINPLRSLLGRDPVVILPMEGGEGLAREVTKTQSLAWDSLATLLTVEAPLIEDLKDGIQPDVEXXXXXXXXXXXXXXYDPLAVEGDGMEEGMMEMNRGLDKGEVYKFDFE 486
            S  I S+ PL   L   P    P  G E LA+ VT +QSLAW+SL TLLTV+ P+I D+ +GIQPD+               YDPL  EGDG+E+ ++E  RGLD GEV  FDFE
Sbjct:   93 SKDIRSLTPLPPSLPPFP----PPSGQEELAKAVTSSQSLAWESLITLLTVDIPIIADVPEGIQPDL--GEEGEDGGKDGEEYDPLTAEGDGVEDDVVE--RGLDSGEVVTFDFE 199
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BLAST of NO29G00230 vs. NCBI_GenBank
Match: CBJ30061.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.0 bits (162), Expect = 2.100e-7
Identity = 42/152 (27.63%), Postives = 82/152 (53.95%), Query Frame = 0 
Query:  140 GEEEV----LEIAVDVEELLSFASNLEDALKGVARKDQSAPPPAVILNATNLHWLLGQVAYDTGVRQFCVPGLGHLKDTSALLPDDVEWILSSGVNEKSVRRLPAIEGVRAVYIGNIDTALLLEEALRKEEHRLATRSSYSKVSRSRANFLV 288
            G EEV    +++ VD E+L  F + + +    V  + +      ++ + ++  WLL Q+AYD  +R F    +  L   S+ LPD+  +I S  +  K ++R+  ++G+ AV   + ++ + +EE++  E  RLA +   S++S+SR  +L+
Sbjct:    2 GTEEVEDFEIDMEVDTEKLEVFGTIITE----VKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLLSISSSLPDNSRFIFSGALIPKQIKRILKMKGLSAVVARDAESVVAMEESIDAERKRLAAK-GLSRISQSRERYLL 148
The following BLAST results are available for this feature:
BLAST of NO29G00230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21241.11.100e-1447.83hypothetical protein Naga_101897g1, partial [Nanno... [more]
CBJ30061.12.100e-727.63expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR079ncniR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00230.1NO29G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|662653gene_10440Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101897g1gene9184Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00230.1NO29G00230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00230 ID=NO29G00230|Name=NO29G00230|organism=Nannochloropsis oceanica|type=gene|length=2739bp
CGACAGGGTGCTCGAGCTCGACCATGATGGAGCAGAGAAGAAAAATTGGG
CAGCTCGCATCAACAAAAGGGAGCGCAGCATGCATCGCCACAATGATCAG
ACAGTCCCTCCTCGCCCGTCAACCAAACCCTATCCGACACTGCCACGTCC
AGCCCCTTGCCTTAATCCTAGTCGCCCTCTTGGTCACACTGGCAAACTCT
TTCCTCGTGCCCGTTCCCCCTTCCCCTTGTTCCCCTTTCCTTGGTGTATC
TACGCACTTTCCCTCCTCCGCCTCCTCCCGCCCCTCCACCACCGCCCTCC
CTGCCCGCTACACCAGCAAGGACACGGGCGACCGAAAGAAGAAGGCGCGT
ATTCGTGGCTTTAAGTCTGCCAAGGCAGGGGGAGCGAGCAAGAGGCCGGG
AATGACAGAGGAGGAGAAGGATTATTTCGACAGgtaggtattcagtggga
ctggactgctaaggcgggtgggtgggtctacgggacgaaaactctatgta
ggtgtgagaatgaattggtagatggatgtaggggtggggatagatgggga
tggagattgggatgggtgtggctgtggatgtgggtgtgggtagtatcgat
aataagcacagctacgtcagtacgtcagcctccctgcttattgctccgtc
gtacttgaagcttgataggagacctcgcgagctaacgacacctctttgag
ctcctctcccctccctccctcctccctccctccctcccctccttccagCC
CCGATGGTGAAGAGGAGGTGCTGGAGATAGCCGTGGACGTGGAAGAGCTC
CTGTCATTTGCGTCCAACCTTGAGGACGCTCTGAAGGGCGTGGCGAGGAA
AGATCAGTCTGCCCCACCGCCCGCCGTCATCCTGAACGCCACAAACCTGC
ACTGGCTGCTGGGACAGgttgggagggagggatggagggaagggggggag
ggagggaagggagcattgccagacaggtggtttgtattggtctcatccag
taggattcattcatatcatttgtttccatctatgatactacattcattca
tatcagtcaccctttctttaattcacatatacatttcatttatcattaat
cattcattcaactcattccatcgtccaatcatgcatgctcacttgtagat
cgcgtcccccttccctccctccctccctccctccctccttccctcccccc
ctcagGTCGCTTACGACACAGGCGTGCGTCAGTTCTGTGTGCCGGGTCTT
GGGCACCTGAAAGACACCTCGGCCCTGCTTCCCGATGACGTGGAGTGGAT
TCTTTCGTCGGGCGTGAACGAGAAGAGCGTCCGTCGCCTTCCTGCAATTG
AGGGTGTGAGGGCTGTGTATATCGGCAACATCGACACGGCGTTACTATTG
GAAGAGGCTTTAAGAAAGgtacgtcttctccttccttccatccctgcatc
cttccttccctctgtgttcacctcttttctctctgatctctatcgttgtc
tggcttatcgcacacgctccctccctccctccctccctccctccctccct
cccttagGAGGAACACCGACTGGCCACTCGCTCTAGCTACAGCAAAGTCT
CTCGTTCTCGCGCAAATTTCCTCGTCGCGCAACAGAAGAAGAAGCTGCAA
GAGAAAAAGAAGGCCAAGCGGAAGAAGGAGTCCGAGGGGGAGGGGGAGGA
CGGGAGGGAGGGAGGGATGGAGGAAGGGGCAGAGGAGTTGGATTTTCAGC
TGTTGAAGGCGGTGGTGCTGGCGCCCACGAGCGACGAGGACGATGTGATG
CTTTTGGCCACCCAGATACGgtaaggtcgaagggagggtagggagggtag
ggagggatggatgggtgggagggagggaggggagggagggctctcttggc
cgaatgtcttgcgagcacttgtcggctgtgccataattcctccctccttc
cctccatccatctctcctcctgcagTGACCGTTGCCCGCGTCTCGTCCTC
TGGGGGCTCTCTCTTGAGAAAGCTCGAGGCTCCCATACCATCGCCAGCAT
CAACCCCCTTCGTTCGCTTTTGGGGAGGGATCCTGTGGTTATACTGCCCA
TGGAAGgtacggaaggagggagggacggagggaggtcagggagggaagga
tggagggagggagagagtgcgcatttggtaatcatcccttccccacctcc
ctccctcccttccctcagGCGGCGAAGGTCTGGCCAGGGAAGTGACCAAG
ACACAGTCCTTGGCATGGGATAGCCTCGCGACGCTTTTAACGGTCGAGGC
GCCGTTAATCGAAGATTTGAAAGACGGGATCCAGCCTGATGTGGAGGAGG
AGGAGGAGGAGGGGGGAGGAGGGAGAGAGGAAGGGGGGTATGACCCGTTG
GCGGTGGAGGGGGATGGGATGGAGGAGGGCATGATGGAAATGAATAGAGG
GCTGGATAAGGGAGAGGTGTACAAGTTTGACTTTGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGGGGGGGAGGAGAGAGTAGTGGAAGAGGAG
GTAGTGGAGGTGATGGAGGAAAGAAGGCAAGGACCCGTCTCACGCCGGGC
GGCAAGAAAGCCGTCCACAGTCACAGCAGCAGCAGCGAAGAAGATGAAGG
AGGGAAAGGGAGAGGTGGAGGAGGGGGAACGGGAAGGCGAGGGAAGAGGG
GGGGCATTTGGTGCAGGGTTGGACAGAAAGGGGTGGTAA
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protein sequence of NO29G00230.1

>NO29G00230.1-protein ID=NO29G00230.1-protein|Name=NO29G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MMEQRRKIGQLASTKGSAACIATMIRQSLLARQPNPIRHCHVQPLALILV
ALLVTLANSFLVPVPPSPCSPFLGVSTHFPSSASSRPSTTALPARYTSKD
TGDRKKKARIRGFKSAKAGGASKRPGMTEEEKDYFDSPDGEEEVLEIAVD
VEELLSFASNLEDALKGVARKDQSAPPPAVILNATNLHWLLGQVAYDTGV
RQFCVPGLGHLKDTSALLPDDVEWILSSGVNEKSVRRLPAIEGVRAVYIG
NIDTALLLEEALRKEEHRLATRSSYSKVSRSRANFLVAQQKKKLQEKKKA
KRKKESEGEGEDGREGGMEEGAEELDFQLLKAVVLAPTSDEDDVMLLATQ
IRDRCPRLVLWGLSLEKARGSHTIASINPLRSLLGRDPVVILPMEGGEGL
AREVTKTQSLAWDSLATLLTVEAPLIEDLKDGIQPDVEEEEEEGGGGREE
GGYDPLAVEGDGMEEGMMEMNRGLDKGEVYKFDFEEEEEEEEEEEEGGEE
RVVEEEVVEVMEERRQGPVSRRAARKPSTVTAAAAKKMKEGKGEVEEGER
EGEGRGGAFGAGLDRKGW*
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Synonyms
Publications