NO29G00190, NO29G00190 (gene) Nannochloropsis oceanica

Overview
NameNO29G00190
Unique NameNO29G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length790
Alignment locationchr29:77379..78168 +

Link to JBrowse

Properties
Property NameValue
DescriptionPx domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:77379..78168 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
GO:0008289lipid binding
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf
IPR001683Phox
Homology
BLAST of NO29G00190 vs. NCBI_GenBank
Match: XP_005853399.1 (px domain containing protein [Nannochloropsis gaditana CCMP526] >EKU22961.1 px domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 147.1 bits (370), Expect = 4.500e-32
Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 0
Query:   70 KEHRRRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAFVRGEEGFR 157
            KEHR RF+DFDKLD KIRSYFWGHHLASSLP LPPK+ K L++H SPSFLEERR ALDAY+ +L  FP+V+RNPDWQAFV GE G R
Sbjct:  220 KEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFVLGEPGLR 306          
BLAST of NO29G00190 vs. NCBI_GenBank
Match: EWM21227.1 (px domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 4.500e-32
Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 0
Query:   70 KEHRRRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAFVRGEEGFR 157
            KEHR RF+DFDKLD KIRSYFWGHHLASSLP LPPK+ K L++H SPSFLEERR ALDAY+ +L  FP+V+RNPDWQAFV GE G R
Sbjct:  225 KEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFVLGEPGLR 311          
BLAST of NO29G00190 vs. NCBI_GenBank
Match: XP_005856197.1 (px domain containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU20177.1 px domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 117.5 bits (293), Expect = 3.800e-23
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 0
Query:   70 KEHRRRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVR 141
            KEHR RF+DFDKLD KIRSYFWGHHLASSLP LPPK+ K L++H SPSFLEERR ALDAY+ +L  FP+V+
Sbjct:  220 KEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQ 290          
BLAST of NO29G00190 vs. NCBI_GenBank
Match: EWM24547.1 (hypothetical protein Naga_100260g2 [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 2.200e-10
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 0
Query:   74 RRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAF 149
            RR++DFDKLD  +RS F G HL SSLP+LP K     +  + P F+E RR  L+ Y+ +L+  P    NPD   F
Sbjct:  247 RRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMPKASHNPDLLRF 321          
BLAST of NO29G00190 vs. NCBI_GenBank
Match: XP_009038266.1 (hypothetical protein AURANDRAFT_71905 [Aureococcus anophagefferens] >EGB07029.1 hypothetical protein AURANDRAFT_71905 [Aureococcus anophagefferens])

HSP 1 Score: 74.3 bits (181), Expect = 3.700e-10
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 0
Query:   66 DVGVKEHRRRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAFV 150
            +V      RRF+DF  LDE I     GHH+ +S+P LP K  K+   HN  +FLE RR  LD YV KL+  PHV   P    FV
Sbjct:  155 EVATTRVHRRFRDFADLDEAITGALAGHHVRNSVPRLPLKKLKLFQDHNDAAFLEARRRDLDGYVAKLVHVPHVWATPPAAPFV 238          
BLAST of NO29G00190 vs. NCBI_GenBank
Match: GBG26089.1 (Hypothetical Protein FCC1311_023092 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 74.3 bits (181), Expect = 3.700e-10
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0
Query:   73 RRRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAFV 150
            ++RF +F +LD  +RS F   HL SSLP LPP+  K L+ H + +F+ +RRMAL AY+ KL   P +  NPD   F+
Sbjct:  200 QKRFSEFVELDRLVRSAFATSHLLSSLPTLPPRQIKALADHTNQAFIVKRRMALSAYLRKLAKMPRIPCNPDVLEFL 276          
BLAST of NO29G00190 vs. NCBI_GenBank
Match: CBN76238.1 (PX domain containing protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 72.4 bits (176), Expect = 1.400e-9
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 0
Query:   74 RRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAFV 150
            RRF+DF  L E++ S   GHHL SSLP  P K  K+ ++H   SF+EERR AL+ Y+  LL  PHV      +AF+
Sbjct:   86 RRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFL 161          
BLAST of NO29G00190 vs. NCBI_GenBank
Match: XP_005853793.1 (px domain containing protein [Nannochloropsis gaditana CCMP526] >EKU22566.1 px domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 69.7 bits (169), Expect = 9.100e-9
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0
Query:   74 RRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAFV 150
            RR+++F  L E++ + F GHHL SSLP LP +  K+L  HN  +F+EERR+ L+  + KLL+ PHV      Q F+
Sbjct:  151 RRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFL 226          
BLAST of NO29G00190 vs. NCBI_GenBank
Match: EWM22419.1 (px domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 9.100e-9
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0
Query:   74 RRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAFV 150
            RR+++F  L E++ + F GHHL SSLP LP +  K+L  HN  +F+EERR+ L+  + KLL+ PHV      Q F+
Sbjct:  151 RRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFL 226          
BLAST of NO29G00190 vs. NCBI_GenBank
Match: GBG33055.1 (Sorting nexin-2 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 68.9 bits (167), Expect = 1.600e-8
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0
Query:   74 RRFKDFDKLDEKIRSYFWGHHLASSLPALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAFV 150
            RRF+DF     +IRS F+G H+ SS+P  PPK  K+L  H    FLE RR  L+ ++ + L  P V  NPD +AF+
Sbjct:  152 RRFRDFRFAYSQIRSAFYGTHMLSSVPKHPPKHNKLLQDHLRTEFLETRRQDLENWLRRTLLVPRVAVNPDMEAFL 227          
The following BLAST results are available for this feature:
BLAST of NO29G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
XP_005853399.14.500e-3275.86px domain containing protein [Nannochloropsis gadi... [more]
EWM21227.14.500e-3275.86px domain containing protein [Nannochloropsis gadi... [more]
XP_005856197.13.800e-2374.65px domain containing protein, partial [Nannochloro... [more]
EWM24547.12.200e-1045.33hypothetical protein Naga_100260g2 [Nannochloropsi... [more]
XP_009038266.13.700e-1045.24hypothetical protein AURANDRAFT_71905 [Aureococcus... [more]
GBG26089.13.700e-1045.45Hypothetical Protein FCC1311_023092 [Aurantiochytr... [more]
CBN76238.11.400e-947.37PX domain containing protein (Partial), partial [E... [more]
XP_005853793.19.100e-944.74px domain containing protein [Nannochloropsis gadi... [more]
EWM22419.19.100e-944.74px domain containing protein [Nannochloropsis gadi... [more]
GBG33055.11.600e-844.74Sorting nexin-2 [Aurantiochytrium sp. FCC1311][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL064nonsL064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR079ncniR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR080ngnoR080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00190.1NO29G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00190.1NO29G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00190 ID=NO29G00190|Name=NO29G00190|organism=Nannochloropsis oceanica|type=gene|length=790bp
ATGGAGGAGTGGGAGGACGAGGAAGAGGAAGGGGACTCTCTGATCCAGTC
GTCGTCGGCAGCTGTCGCGAGGGAGGGAGGGAAGGCGCGAGTCAAGGCCT
TCTACACAGTGCGGACCACTTGGAGCCGACGACAAAGGCAGGAAGGGAGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGGGAAGGGGAGGGGATGT
GGGTGTAAAAGAGCACCGGCGGCGCTTCAAGGACTTTGACAAGCTGGATG
AAAAGgtgaagaaggaggatcagagggagagagggaaggagtgtaaaagg
aggaaaaatgtattgatcgcgcttatcattgccatgatcacctccccctg
caagacgtgtcttggggctgacctctctctcttctccccccctccctcct
tcctcttgtccttcctcttaatctttagATCCGCTCGTACTTCTGGGGCC
ACCACCTCGCCTCCTCCCTTCCTGCTCTTCCTCCCAAGTTTTTCAAGGTC
CTGAGCTCCCACAACTCTCCCTCGTTCCTGGAAGAGAGGCGGATGGCACT
GGACGCGTATGTACATAAGCTACTGgtaagacaaaagggaaattggagag
gaaggagggattggcatcaaggcatttactccacttcctttcttatcaat
tggatattgatacacttcctcatcaattggatattgatatactgacttca
ctttccccttgttcttaatagACATTTCCACACGTGCGACGCAACCCGGA
CTGGCAAGCCTTCGTGCGGGGGGAAGAAGGCTTCAGATGA
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protein sequence of NO29G00190.1

>NO29G00190.1-protein ID=NO29G00190.1-protein|Name=NO29G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MEEWEDEEEEGDSLIQSSSAAVAREGGKARVKAFYTVRTTWSRRQRQEGR
EEEEEEEEEGGGRGGDVGVKEHRRRFKDFDKLDEKIRSYFWGHHLASSLP
ALPPKFFKVLSSHNSPSFLEERRMALDAYVHKLLTFPHVRRNPDWQAFVR
GEEGFR*
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Synonyms
Publications