NO29G00180, NO29G00180 (gene) Nannochloropsis oceanica

Overview
NameNO29G00180
Unique NameNO29G00180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1079
Alignment locationchr29:76235..77313 +

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Properties
Property NameValue
DescriptionPx domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:76235..77313 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Homology
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BLAST of NO29G00180 vs. NCBI_GenBank
Match: XP_005856197.1 (px domain containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU20177.1 px domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 190.3 bits (482), Expect = 4.700e-45
Identity = 87/142 (61.27%), Postives = 115/142 (80.99%), Query Frame = 0 
Query:    1 MGNQPPTKATLSGLVTRIWRYPHRIDGKDKETLIILRHYRRKGEKILYVNGETVHHSVDRIDSGGVLPFELLDGRVPCELAIVDYPGLSSYTLTIRGSTWPCDNDGIEAEKNGGGREGRGEGTEEEVWVEEVSVSAVSLLPV 143
            MGNQPPTKATLSGLVTRIWRYP+R +G++ E LI+LRH+R KGEKI+YV+G+ VHHS+DRIDSGG++ FE+L G+VPCEL +VDYPGL+SY+L IRG  W CD +  +A+   GGR+    G  E + +E V+V++V+LLP+
Sbjct:    1 MGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTE--QADGGEGGRQ--PVGLSENLSIESVTVASVALLPL 138
[Close]
BLAST of NO29G00180 vs. NCBI_GenBank
Match: XP_005853399.1 (px domain containing protein [Nannochloropsis gaditana CCMP526] >EKU22961.1 px domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 190.3 bits (482), Expect = 4.700e-45
Identity = 87/142 (61.27%), Postives = 115/142 (80.99%), Query Frame = 0 
Query:    1 MGNQPPTKATLSGLVTRIWRYPHRIDGKDKETLIILRHYRRKGEKILYVNGETVHHSVDRIDSGGVLPFELLDGRVPCELAIVDYPGLSSYTLTIRGSTWPCDNDGIEAEKNGGGREGRGEGTEEEVWVEEVSVSAVSLLPV 143
            MGNQPPTKATLSGLVTRIWRYP+R +G++ E LI+LRH+R KGEKI+YV+G+ VHHS+DRIDSGG++ FE+L G+VPCEL +VDYPGL+SY+L IRG  W CD +  +A+   GGR+    G  E + +E V+V++V+LLP+
Sbjct:    1 MGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTE--QADGGEGGRQ--PVGLSENLSIESVTVASVALLPL 138
[Close]
BLAST of NO29G00180 vs. NCBI_GenBank
Match: EWM21227.1 (px domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 187.6 bits (475), Expect = 3.000e-44
Identity = 86/142 (60.56%), Postives = 114/142 (80.28%), Query Frame = 0 
Query:    1 MGNQPPTKATLSGLVTRIWRYPHRIDGKDKETLIILRHYRRKGEKILYVNGETVHHSVDRIDSGGVLPFELLDGRVPCELAIVDYPGLSSYTLTIRGSTWPCDNDGIEAEKNGGGREGRGEGTEEEVWVEEVSVSAVSLLPV 143
            MGNQPPTKATLSGLVTRIWRYP+R +G++ E LI+LRH+R KGEKI+YV+G+ VHHS+DRIDSGG++ FE+L G+VPCEL +VDYPGL+SY+L IRG  W CD +  +A+   GGR+    G    + +E V+V++V+LLP+
Sbjct:    6 MGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTE--QADGGEGGRQ--PVGLSGNLSIESVTVASVALLPL 143
The following BLAST results are available for this feature:
BLAST of NO29G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005856197.14.700e-4561.27px domain containing protein, partial [Nannochloro... [more]
XP_005853399.14.700e-4561.27px domain containing protein [Nannochloropsis gadi... [more]
EWM21227.13.000e-4460.56px domain containing protein [Nannochloropsis gadi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL064nonsL064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR079ncniR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR080ngnoR080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00180.1NO29G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100507g3gene9198Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00180.1NO29G00180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00180 ID=NO29G00180|Name=NO29G00180|organism=Nannochloropsis oceanica|type=gene|length=1079bp
ATGGGCAACCAACCCCCCACCAAGGCGACACTATCGGGGCTAGTGACACG
AATCTGGCGCTACCCACATCGGATTGATGGCAAGGACAAGGAAACTTTGA
TTATACTTCGgtaagatacaggtagaatggcagggtaaggtgaggacgga
gggcaaatgctacctagggagcgaggaaggaagcccggcacctaactcac
aaccagacacacaacattccacaccaatcccttgcctcaaagGCACTATC
GGCGTAAGGGCGAGAAGATCCTCTATGTAAATGgtaagtgccgtggttgg
ctttacatgtgtgcttcgcgtcccggggttccctttcttcatcttctctt
ttgaccccagcttcttattcttccccacgtcctctctttgtgttcttctt
ctaccttctattctttgttctctttatccttctccacaccttgattcagc
cgaagggcagcttcgtgtttgttttctgtttgctctcttcgtccacattc
gtctccttggttctgataccgtcccctctccacactcgtcaccctccctc
cttacctcctcattattgtagGTGAGACGGTGCACCATTCCGTGGATCGC
ATTGACAGCGGCGGCGTCTTGCCTTTCGAGCTCCTCGATGGACGCGTGCC
GTGCGAACTGGCCATTGTTGACTACCCCGgtgcgtgcagagagggaggga
gggagagagggagggaaggagggaaggttgcaagggggggcgggaacatg
attgtaacagccctttgtgcttgcgccacccattcgtctgatattccatt
gcacctccttccctgtcacgtgacgtgccctccctccctccctccctccc
tccctccctggcagGCCTCTCTTCTTACACACTCACCATTCGGGGCTCCA
CATGGCCCTGTGACAACGATGGCATCGAAGCCGAGAAGAATGGGGGAGGA
AGAGAGGGAAGAGGGGAAGGGACAGAGGAGGAGGTTTGGGTAGAGGAAGT
GTCGGTAAGTGCTGTGTCGTTGCTGCCAGTGGGGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGGGGGGCAGTAG
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protein sequence of NO29G00180.1

>NO29G00180.1-protein ID=NO29G00180.1-protein|Name=NO29G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MGNQPPTKATLSGLVTRIWRYPHRIDGKDKETLIILRHYRRKGEKILYVN
GETVHHSVDRIDSGGVLPFELLDGRVPCELAIVDYPGLSSYTLTIRGSTW
PCDNDGIEAEKNGGGREGRGEGTEEEVWVEEVSVSAVSLLPVGEEEEEEE
EEEEGGQ*
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Synonyms
Publications