NO29G00100, NO29G00100 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G00100 vs. NCBI_GenBank
Match: CBJ31789.1 (pseudouridine synthase [Ectocarpus siliculosus]) HSP 1 Score: 198.4 bits (503), Expect = 5.200e-47 Identity = 124/347 (35.73%), Postives = 195/347 (56.20%), Query Frame = 0 Query: 91 KEGTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTM--------PTLGMASASIGLGFALLPEKM-NLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSS--EEPCEILASP----TQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKM-AVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVY--CAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAIHFMLQGKGSRAGKE 420 ++ P+D +L RR P SRR R+ L+ G V+V+G+ + R ++ R +SV + + P+++ L +++ED+H K ++ QPC +A GT+LHG+M+H+V S EE +I A+ +QG+V RLDK TSG+ + KT AA+S+LS+LF+ + K YLA+ HGDP + +V+ P++R+S+GK+ AV E E +AK A + V + T LSL R I+TGR HQ+RVHL +G P++GD Y A+F R ++ +R LLH+ SL F+HPF+ ++ AP+P DM +L+ G+ +E Sbjct: 140 EDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRG-ARISVDLGRXXXXXXXXXXXXXXXXXXXXLVFPQRLPRLRVVFEDDHLFVAMKPAGMICQPCAAAPRGTVLHGLMYHMVQSGQLEEGSDITAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDP----GFDSVVDAPLYRRSSGKVGAVEPWEAEAFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRVEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPPDMWETAQNILRVSGTPEQQE 481
BLAST of NO29G00100 vs. NCBI_GenBank
Match: EWM21217.1 (pseudouridine family, partial [Nannochloropsis gaditana]) HSP 1 Score: 186.0 bits (471), Expect = 2.700e-43 Identity = 93/131 (70.99%), Postives = 106/131 (80.92%), Query Frame = 0 Query: 320 QLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAIHFMLQGKGSRAGKEDEERKLKLLRLLRDGKPLTSVLDSDMASPVP 451 ++SLVRV I+TGRTHQIRVHLTHLGHPVLGDDVYC+ADFT KN HLR+LGLKRVLLHAYSL+F+HP +T L LLAPLPRDMLS F+L GK ++ R KLLRLLRDG+PLT L D+ASPVP Sbjct: 9 RISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPGPTGKHEDSR--KLLRLLRDGEPLTPALGHDVASPVP 137
BLAST of NO29G00100 vs. NCBI_GenBank
Match: WP_051184398.1 (RluA family pseudouridine synthase [Desulfatiglans anilini]) HSP 1 Score: 180.3 bits (456), Expect = 1.500e-41 Identity = 125/325 (38.46%), Postives = 167/325 (51.38%), Query Frame = 0 Query: 93 GTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHG--DPCRGRKGEIIVEQPIFRK------SNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNK----NRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAI 406 G + LD+ L RFP LSR + L++ GKV +NG +T+ S+ R VS+ +P L PE + ILYEDE+ V + K P +VV P TGTL+HG++H S I + G+VHRLDKDTSGV + KT AA LS FK+ + K YLALVHG G+ I + RK S G+ A+ E ++ A SL+ V+I TGRTHQIRVHL H+GHPV+GD VY K R + ++R +LHA+ +SF HP S+ L APLP DM + + Sbjct: 9 GDIRLDVFLSSRFPELSRSRIQTLIKGGKVDINGGPVTKPSQTVRPGDRVSIVIPP--------PKPLELEPEAIEFDILYEDEYLVVLDKPPGLVVHPAPGHDTGTLVHGLLHRCDGLS----GIGGTARPGIVHRLDKDTSGVMIVAKTDAAHQILSLQFKNGQIGKEYLALVHGIVQSPSGKIDAAIARHQLKRKEMCVRASAGRHALSLWERREAFAVGC-------------SLLSVKIKTGRTHQIRVHLAHIGHPVVGDSVYGRGIAGWKRIWAGREVDAPVVRRQMLHAFRISFDHPLSRERLLFEAPLPEDMSTVL 308
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OGN53471.1 (hypothetical protein A2Z85_03695 [Chlamydiae bacterium GWA2_50_15] >OGN54134.1 hypothetical protein A2Y28_01595 [Chlamydiae bacterium GWC2_50_10] >OGN57646.1 hypothetical protein A3D18_02725 [Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_49_29] >OGN64518.1 hypothetical protein A3E26_02925 [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_32] >OGN70681.1 hypothetical protein A3I15_05765 [Chlamydiae bacterium RIFCSPLOWO2_02_FULL_49_12] >OGN72281.1 hypothetical protein A3G30_04160 [Chlamydiae bacterium RIFCSPLOWO2_12_FULL_49_12]) HSP 1 Score: 176.4 bits (446), Expect = 2.100e-40 Identity = 117/323 (36.22%), Postives = 172/323 (53.25%), Query Frame = 0 Query: 85 EFKLEGKEGTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSK--IGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAI 406 +F + ++ LD+LL + + SR + L++ G V +NG + + +K +G + +P + L PE + L IL+EDEH +A+ K +VV P + T ++ ++HH E P + A G+VHRLDK+TSGV L K++AA + SLF R + KTY+A+ G+P ++ P+ RK ++AV K AV+++ L + G S V + +TGRTHQIRVH+ H+G P+LGD VY A F NK KL L R LLHA SL F+HPF K L + APLP M S + Sbjct: 6 QFLITQEDAGRRLDLLLASHYSSYSRSYFQYLMEAGAVLLNGSPVKKRTKPRLGDEVSLSLIPLPEM-----------RLEPEAIFLDILFEDEHLIAINKPAGMVVHPAPGHPSHTFVNALLHH---CKELPDTLGAPLRPGIVHRLDKETSGVLLAAKSQAAHREIVSLFSERKVKKTYVAICLGNPKDQTIRAPLLRHPVRRK---EIAV------APSGKEAVTSIRVLSSQGNYSFVEIAPLTGRTHQIRVHMRHIGAPILGDPVYGPA-FLNK-----KLQLSRQLLHARSLFFIHPFEKRPLEISAPLPAAMRSLL 299
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OQW97920.1 (hypothetical protein BWK77_00520 [Verrucomicrobia bacterium A1]) HSP 1 Score: 176.4 bits (446), Expect = 2.100e-40 Identity = 107/327 (32.72%), Postives = 176/327 (53.82%), Query Frame = 0 Query: 97 LDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHG--DPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAIHFMLQGK-GSRAGKED 421 LD+ L R P SR + L+ DG+V++NG ++ + + + ++ +P + ++PE + +++ED+ + + K VV P GTL+H ++HH E+ G+VHRLD+DTSG+ + K++ A RL +FK R + K Y+A+V G +P RG ++ PI R + + + E + AV+ E + T+GQ+S+VR+RI TGRTHQIRVH+TH+G+P++GD +Y A + + + LG R +LHA +L+ HP + L AP+P DM + +L G+ + KED Sbjct: 15 LDVCLARLAPDHSRARWQALIADGRVQLNGNIVVKPRTVVAAGDAIDYVIP--------VPTPTRMVPEDRPIDVVFEDDEMLVLNKPAGWVVHPGPGHEKGTLVHALLHHCPDLKGIGGEV----RPGIVHRLDQDTSGLLVVAKSELAHRRLVEMFKERAIRKEYVAIVFGRPEPERG-----VIRTPIGRSDSNRQKMSAKAEH---GRMAVTHYEVVETNGQISMVRIRIETGRTHQIRVHMTHIGYPIVGDAMYGA-----RKQESKALGATRQMLHAETLALSHPITGQDLEFFAPMPADMRKIVAAILAGRLPGGSAKED 316
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OGW50138.1 (hypothetical protein A2078_02140 [Nitrospirae bacterium GWC2_57_9]) HSP 1 Score: 175.6 bits (444), Expect = 3.600e-40 Identity = 121/325 (37.23%), Postives = 173/325 (53.23%), Query Frame = 0 Query: 97 LDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPT----QGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFR--KSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAIHFMLQGKGSR 416 LD+ + P +SR + L++DG RVNG+ K+ + V++ +P + F +L E + L ++YED H + + K P +VV P TGTL++ ++HH S P A T G+VHRLDKDTSGV + +T A + LS+ FK+R + K YLALV G +KG +E + R K K++V KA+ AV+ + Q +LV V I TGRTHQIRVH+ H+GHPVLGD Y N + R +LHA SLSFLHP + + LAP P+DM A+ F+ +G G++ Sbjct: 17 LDMFIAHYEPQISRNRIQTLIRDGLARVNGRTEKPGYKV-KQGEQVTLEIPERKV--------FQVLAEPIPLYVIYEDRHLIVLNKPPGLVVHPAPGNYTGTLVNALLHHYGSL---PTAAAAGETARVRAGIVHRLDKDTSGVMVVARTHEALAALSAQFKARIVQKKYLALVAGVI---KKGSGTIEAGLGRHVKERKKISV-----HTHKAREAVTLYKVKERFKQATLVEVEIKTGRTHQIRVHMAHIGHPVLGDRTYGGVRAAKFN----EATFPRQMLHAESLSFLHPETGHPMTFLAPPPKDMAEAMAFLRKGGGNQ 317
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OJV10968.1 (23S rRNA pseudouridylate synthase [Chlamydiales bacterium 38-26]) HSP 1 Score: 173.3 bits (438), Expect = 1.800e-39 Identity = 112/306 (36.60%), Postives = 163/306 (53.27%), Query Frame = 0 Query: 97 LDILLVRRFPAL-SRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDM 402 LD +L R+P + SR + L++ KV VNG+V+ + R S+ + + + IGL PE + L +++ED + + K P +VV P +GT +H ++HH + + + + P G+VHRLDKDTSG+ + KT RL +F SR + K YLA+ G+P +I P+ R+ KM V + + AVS +TL + G LSLVR+ + TGRTHQIRVH+ H+ PVLGD VY K+ + R LLHA+ L F HP + +L L APLP DM Sbjct: 26 LDKILASRYPGIHSRTYFQYLIEQEKVYVNGEVVKK-----RYQPSIGDEIQIHYILTPEIGLN----PEAIPLDVIFEDSDLIVINKPPGMVVHPAPGHSSGTFVHALLHHCKNLPPDISK-NSYPRPGIVHRLDKDTSGLLVAAKTTLTHKRLIEMFASREIYKEYLAICVGNPGHQEITTLIGRHPVHRQ---KMKVLD-----EGGREAVSVCDTLSSQGSLSLVRIHLKTGRTHQIRVHMQHVHAPVLGDPVYGNTSVNKKH------AVSRQLLHAHILRFKHPITHQSLELKAPLPSDM 307
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OYU71442.1 (RNA pseudouridine synthase [Alphaproteobacteria bacterium PA2]) HSP 1 Score: 172.6 bits (436), Expect = 3.100e-39 Identity = 120/316 (37.97%), Postives = 163/316 (51.58%), Query Frame = 0 Query: 92 EGTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQ-----LSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRH-LRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDM 402 EG LD L P LSR + L+ G+VR GQ +T LS + G+ +T+P A PE + LT+LYED H + V K P + V P + TGTL++ ++HH +S I G+VHR+DKDTSG+ + KT AA LS+LF + + + Y+A+V G P + R G + KMAV K+ + A++ ET G +LV R+ TGRTHQIRVHL LG P LGD VY A T K + + + GL R LHA L F+HP ++ TL +PLP DM Sbjct: 26 EGGGRLDKALADAAPDLSRGRIQALMAQGQVRFGGQALTNLS-AKATAGTYELTLPPPTPAEPQ--------PENIPLTVLYEDAHLIVVDKPPGMAVHPAPGSETGTLVNALLHHCGASLS---GIGGVARPGIVHRIDKDTSGIVVSAKTDAAHQGLSALFAAHDIDRVYVAMVRGAP-KPRAGTLETRIGRSNSDRKKMAV-----LKAGGREAITHYETRTIFGPEDKPVAALVACRLETGRTHQIRVHLASLGAPCLGDPVYGAGAPTQKVKEAMAEAGLTRQALHASVLGFVHPVTEETLRFESPLPADM 323
BLAST of NO29G00100 vs. NCBI_GenBank
Match: WP_098037656.1 (RluA family pseudouridine synthase [Estrella lausannensis] >CRX37800.1 RNA pseudouridine synthase [Estrella lausannensis]) HSP 1 Score: 171.8 bits (434), Expect = 5.200e-39 Identity = 118/308 (38.31%), Postives = 166/308 (53.90%), Query Frame = 0 Query: 97 LDILLVRRFPAL-SRRACRRLLQDGKVRVNGQVITR--LSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDM 402 LD +L RF + SR + L Q+GKV VNG + + + G + P L +A+ E + L ILYEDE +A+ K P +VV P +GT+++ ++ H EE + P G+VHRLDK+TSGV L K+ + +L LF SR + K YLA+ G+P RG I+++PI R + + +E K AV+ ETL TDGQ+SLV++ + TGRTHQIRVH+ PVLGD +Y + +K +R LLHAY LSFLHP +K + APLP D+ Sbjct: 24 LDKILAGRFKDVKSRTYFQYLFQEGKVSVNGLPVKKQYRPRTGDLVEVQFILTPELNLAA-----------ENIPLRILYEDESLIAIDKPPGMVVHPAPGNWSGTVVNALLFHCTRLKEEFQQEHIRP--GIVHRLDKETSGVLLAAKSHSMHGKLVDLFSSRQVYKEYLAVCLGNPGRG-----IIDKPIGRDPYHRKQMKVLDE---GGKRAVTEFETLATDGQVSLVKIILKTGRTHQIRVHMQSKNAPVLGDSLYGSIAVN------KKWKAERQLLHAYRLSFLHPMTKKPITFQAPLPPDL 304
BLAST of NO29G00100 vs. NCBI_GenBank
Match: WP_073037972.1 (RluA family pseudouridine synthase [Desulfacinum infernum] >SHF04068.1 ribosomal large subunit pseudouridine synthase D [Desulfacinum infernum DSM 9756]) HSP 1 Score: 171.0 bits (432), Expect = 8.900e-39 Identity = 123/332 (37.05%), Postives = 175/332 (52.71%), Query Frame = 0 Query: 86 FKLEGKEGTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILA---SPTQ-GLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGE---IIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLT-DGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKN------RHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLS 404 ++++ +E LD+ L + SR C++ +++G+V +NG+ + ++ V V +P + + PE + L ILYEDEH V V K P +VV P +GTL+HG++ H CE LA SP + G+VHRLD++TSGV + K+ A RL FK + KTYLA HG P R KGE +I PI RK +MAV + K AV+ T+ + + Q++L+ VRI+TGRTHQIRVH HLGHP+LGD Y ++ R G++R +LHA L HP + L AP P D LS Sbjct: 7 YQVQAQEAGQRLDLFLASKDAGTSRSQCKKWIEEGRVLLNGRTAKPRHPV-QAGDEVRVRVPE--------PVSPEITPEFLPLHILYEDEHVVVVNKAPGVVVHPGAGHASGTLVHGLLDH--------CERLAAQGSPLRPGIVHRLDRETSGVLVVAKSDRAYLRLIEQFKEHRVRKTYLAFAHGSP-RPEKGELRTLIGRHPIDRK---RMAVVD-----RNGKEAVTQWRTVTSWNDQVALLEVRILTGRTHQIRVHCQHLGHPLLGDPTYGGGKRKSRALPHPRIRDAVLHGVQRTMLHARRLELEHPVTGAPLVWEAPEPEDFLS 312 The following BLAST results are available for this feature:
BLAST of NO29G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G00100 ID=NO29G00100|Name=NO29G00100|organism=Nannochloropsis oceanica|type=gene|length=3915bpback to top protein sequence of NO29G00100.1 >NO29G00100.1-protein ID=NO29G00100.1-protein|Name=NO29G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bpback to top Synonyms
Publications
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