NO29G00100, NO29G00100 (gene) Nannochloropsis oceanica

Overview
NameNO29G00100
Unique NameNO29G00100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3915
Alignment locationchr29:39054..42968 -

Link to JBrowse

Properties
Property NameValue
DescriptionPseudouridine synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:39054..42968 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0016853isomerase activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR006145PsdUridine_synth_RsuA/RluD
IPR002942S4_RNA-bd
Homology
BLAST of NO29G00100 vs. NCBI_GenBank
Match: CBJ31789.1 (pseudouridine synthase [Ectocarpus siliculosus])

HSP 1 Score: 198.4 bits (503), Expect = 5.200e-47
Identity = 124/347 (35.73%), Postives = 195/347 (56.20%), Query Frame = 0
Query:   91 KEGTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTM--------PTLGMASASIGLGFALLPEKM-NLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSS--EEPCEILASP----TQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKM-AVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVY--CAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAIHFMLQGKGSRAGKE 420
            ++   P+D +L RR P  SRR  R+ L+ G V+V+G+ + R  ++ R    +SV +                       + P+++  L +++ED+H     K   ++ QPC +A  GT+LHG+M+H+V S   EE  +I A+     +QG+V RLDK TSG+ +  KT AA+S+LS+LF+   + K YLA+ HGDP      + +V+ P++R+S+GK+ AV   E E  +AK A + V  + T   LSL R  I+TGR HQ+RVHL  +G P++GD  Y    A+F    R   ++  +R LLH+ SL F+HPF+   ++  AP+P DM      +L+  G+   +E
Sbjct:  140 EDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRG-ARISVDLGRXXXXXXXXXXXXXXXXXXXXLVFPQRLPRLRVVFEDDHLFVAMKPAGMICQPCAAAPRGTVLHGLMYHMVQSGQLEEGSDITAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDP----GFDSVVDAPLYRRSSGKVGAVEPWEAEAFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRVEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPPDMWETAQNILRVSGTPEQQE 481          
BLAST of NO29G00100 vs. NCBI_GenBank
Match: EWM21217.1 (pseudouridine family, partial [Nannochloropsis gaditana])

HSP 1 Score: 186.0 bits (471), Expect = 2.700e-43
Identity = 93/131 (70.99%), Postives = 106/131 (80.92%), Query Frame = 0
Query:  320 QLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAIHFMLQGKGSRAGKEDEERKLKLLRLLRDGKPLTSVLDSDMASPVP 451
            ++SLVRV I+TGRTHQIRVHLTHLGHPVLGDDVYC+ADFT KN HLR+LGLKRVLLHAYSL+F+HP  +T L LLAPLPRDMLS   F+L       GK ++ R  KLLRLLRDG+PLT  L  D+ASPVP
Sbjct:    9 RISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPGPTGKHEDSR--KLLRLLRDGEPLTPALGHDVASPVP 137          
BLAST of NO29G00100 vs. NCBI_GenBank
Match: WP_051184398.1 (RluA family pseudouridine synthase [Desulfatiglans anilini])

HSP 1 Score: 180.3 bits (456), Expect = 1.500e-41
Identity = 125/325 (38.46%), Postives = 167/325 (51.38%), Query Frame = 0
Query:   93 GTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHG--DPCRGRKGEIIVEQPIFRK------SNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNK----NRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAI 406
            G + LD+ L  RFP LSR   + L++ GKV +NG  +T+ S+  R    VS+ +P              L PE +   ILYEDE+ V + K P +VV P     TGTL+HG++H     S     I  +   G+VHRLDKDTSGV +  KT AA   LS  FK+  + K YLALVHG      G+    I    + RK      S G+ A+   E  ++ A                SL+ V+I TGRTHQIRVHL H+GHPV+GD VY       K     R +    ++R +LHA+ +SF HP S+  L   APLP DM + +
Sbjct:    9 GDIRLDVFLSSRFPELSRSRIQTLIKGGKVDINGGPVTKPSQTVRPGDRVSIVIPP--------PKPLELEPEAIEFDILYEDEYLVVLDKPPGLVVHPAPGHDTGTLVHGLLHRCDGLS----GIGGTARPGIVHRLDKDTSGVMIVAKTDAAHQILSLQFKNGQIGKEYLALVHGIVQSPSGKIDAAIARHQLKRKEMCVRASAGRHALSLWERREAFAVGC-------------SLLSVKIKTGRTHQIRVHLAHIGHPVVGDSVYGRGIAGWKRIWAGREVDAPVVRRQMLHAFRISFDHPLSRERLLFEAPLPEDMSTVL 308          
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OGN53471.1 (hypothetical protein A2Z85_03695 [Chlamydiae bacterium GWA2_50_15] >OGN54134.1 hypothetical protein A2Y28_01595 [Chlamydiae bacterium GWC2_50_10] >OGN57646.1 hypothetical protein A3D18_02725 [Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_49_29] >OGN64518.1 hypothetical protein A3E26_02925 [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_32] >OGN70681.1 hypothetical protein A3I15_05765 [Chlamydiae bacterium RIFCSPLOWO2_02_FULL_49_12] >OGN72281.1 hypothetical protein A3G30_04160 [Chlamydiae bacterium RIFCSPLOWO2_12_FULL_49_12])

HSP 1 Score: 176.4 bits (446), Expect = 2.100e-40
Identity = 117/323 (36.22%), Postives = 172/323 (53.25%), Query Frame = 0
Query:   85 EFKLEGKEGTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSK--IGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAI 406
            +F +  ++    LD+LL   + + SR   + L++ G V +NG  + + +K  +G       + +P +            L PE + L IL+EDEH +A+ K   +VV P     + T ++ ++HH     E P  + A    G+VHRLDK+TSGV L  K++AA   + SLF  R + KTY+A+  G+P        ++  P+ RK   ++AV          K AV+++  L + G  S V +  +TGRTHQIRVH+ H+G P+LGD VY  A F NK     KL L R LLHA SL F+HPF K  L + APLP  M S +
Sbjct:    6 QFLITQEDAGRRLDLLLASHYSSYSRSYFQYLMEAGAVLLNGSPVKKRTKPRLGDEVSLSLIPLPEM-----------RLEPEAIFLDILFEDEHLIAINKPAGMVVHPAPGHPSHTFVNALLHH---CKELPDTLGAPLRPGIVHRLDKETSGVLLAAKSQAAHREIVSLFSERKVKKTYVAICLGNPKDQTIRAPLLRHPVRRK---EIAV------APSGKEAVTSIRVLSSQGNYSFVEIAPLTGRTHQIRVHMRHIGAPILGDPVYGPA-FLNK-----KLQLSRQLLHARSLFFIHPFEKRPLEISAPLPAAMRSLL 299          
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OQW97920.1 (hypothetical protein BWK77_00520 [Verrucomicrobia bacterium A1])

HSP 1 Score: 176.4 bits (446), Expect = 2.100e-40
Identity = 107/327 (32.72%), Postives = 176/327 (53.82%), Query Frame = 0
Query:   97 LDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHG--DPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAIHFMLQGK-GSRAGKED 421
            LD+ L R  P  SR   + L+ DG+V++NG ++ +   +  +  ++   +P        +     ++PE   + +++ED+  + + K    VV P      GTL+H ++HH         E+      G+VHRLD+DTSG+ +  K++ A  RL  +FK R + K Y+A+V G  +P RG     ++  PI R  + +  +    E     + AV+  E + T+GQ+S+VR+RI TGRTHQIRVH+TH+G+P++GD +Y A     + +  + LG  R +LHA +L+  HP +   L   AP+P DM   +  +L G+    + KED
Sbjct:   15 LDVCLARLAPDHSRARWQALIADGRVQLNGNIVVKPRTVVAAGDAIDYVIP--------VPTPTRMVPEDRPIDVVFEDDEMLVLNKPAGWVVHPGPGHEKGTLVHALLHHCPDLKGIGGEV----RPGIVHRLDQDTSGLLVVAKSELAHRRLVEMFKERAIRKEYVAIVFGRPEPERG-----VIRTPIGRSDSNRQKMSAKAEH---GRMAVTHYEVVETNGQISMVRIRIETGRTHQIRVHMTHIGYPIVGDAMYGA-----RKQESKALGATRQMLHAETLALSHPITGQDLEFFAPMPADMRKIVAAILAGRLPGGSAKED 316          
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OGW50138.1 (hypothetical protein A2078_02140 [Nitrospirae bacterium GWC2_57_9])

HSP 1 Score: 175.6 bits (444), Expect = 3.600e-40
Identity = 121/325 (37.23%), Postives = 173/325 (53.23%), Query Frame = 0
Query:   97 LDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPT----QGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFR--KSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLSAIHFMLQGKGSR 416
            LD+ +    P +SR   + L++DG  RVNG+      K+ +    V++ +P   +        F +L E + L ++YED H + + K P +VV P     TGTL++ ++HH  S    P    A  T     G+VHRLDKDTSGV +  +T  A + LS+ FK+R + K YLALV G     +KG   +E  + R  K   K++V        KA+ AV+  +      Q +LV V I TGRTHQIRVH+ H+GHPVLGD  Y        N    +    R +LHA SLSFLHP +   +  LAP P+DM  A+ F+ +G G++
Sbjct:   17 LDMFIAHYEPQISRNRIQTLIRDGLARVNGRTEKPGYKV-KQGEQVTLEIPERKV--------FQVLAEPIPLYVIYEDRHLIVLNKPPGLVVHPAPGNYTGTLVNALLHHYGSL---PTAAAAGETARVRAGIVHRLDKDTSGVMVVARTHEALAALSAQFKARIVQKKYLALVAGVI---KKGSGTIEAGLGRHVKERKKISV-----HTHKAREAVTLYKVKERFKQATLVEVEIKTGRTHQIRVHMAHIGHPVLGDRTYGGVRAAKFN----EATFPRQMLHAESLSFLHPETGHPMTFLAPPPKDMAEAMAFLRKGGGNQ 317          
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OJV10968.1 (23S rRNA pseudouridylate synthase [Chlamydiales bacterium 38-26])

HSP 1 Score: 173.3 bits (438), Expect = 1.800e-39
Identity = 112/306 (36.60%), Postives = 163/306 (53.27%), Query Frame = 0
Query:   97 LDILLVRRFPAL-SRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDM 402
            LD +L  R+P + SR   + L++  KV VNG+V+ +     R   S+   +    + +  IGL     PE + L +++ED   + + K P +VV P     +GT +H ++HH  +   +  +  + P  G+VHRLDKDTSG+ +  KT     RL  +F SR + K YLA+  G+P       +I   P+ R+   KM V +        + AVS  +TL + G LSLVR+ + TGRTHQIRVH+ H+  PVLGD VY       K+       + R LLHA+ L F HP +  +L L APLP DM
Sbjct:   26 LDKILASRYPGIHSRTYFQYLIEQEKVYVNGEVVKK-----RYQPSIGDEIQIHYILTPEIGLN----PEAIPLDVIFEDSDLIVINKPPGMVVHPAPGHSSGTFVHALLHHCKNLPPDISK-NSYPRPGIVHRLDKDTSGLLVAAKTTLTHKRLIEMFASREIYKEYLAICVGNPGHQEITTLIGRHPVHRQ---KMKVLD-----EGGREAVSVCDTLSSQGSLSLVRIHLKTGRTHQIRVHMQHVHAPVLGDPVYGNTSVNKKH------AVSRQLLHAHILRFKHPITHQSLELKAPLPSDM 307          
BLAST of NO29G00100 vs. NCBI_GenBank
Match: OYU71442.1 (RNA pseudouridine synthase [Alphaproteobacteria bacterium PA2])

HSP 1 Score: 172.6 bits (436), Expect = 3.100e-39
Identity = 120/316 (37.97%), Postives = 163/316 (51.58%), Query Frame = 0
Query:   92 EGTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQ-----LSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRH-LRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDM 402
            EG   LD  L    P LSR   + L+  G+VR  GQ +T LS    + G+  +T+P    A           PE + LT+LYED H + V K P + V P   + TGTL++ ++HH  +S      I      G+VHR+DKDTSG+ +  KT AA   LS+LF +  + + Y+A+V G P + R G +            KMAV      K+  + A++  ET    G       +LV  R+ TGRTHQIRVHL  LG P LGD VY A   T K +  + + GL R  LHA  L F+HP ++ TL   +PLP DM
Sbjct:   26 EGGGRLDKALADAAPDLSRGRIQALMAQGQVRFGGQALTNLS-AKATAGTYELTLPPPTPAEPQ--------PENIPLTVLYEDAHLIVVDKPPGMAVHPAPGSETGTLVNALLHHCGASLS---GIGGVARPGIVHRIDKDTSGIVVSAKTDAAHQGLSALFAAHDIDRVYVAMVRGAP-KPRAGTLETRIGRSNSDRKKMAV-----LKAGGREAITHYETRTIFGPEDKPVAALVACRLETGRTHQIRVHLASLGAPCLGDPVYGAGAPTQKVKEAMAEAGLTRQALHASVLGFVHPVTEETLRFESPLPADM 323          
BLAST of NO29G00100 vs. NCBI_GenBank
Match: WP_098037656.1 (RluA family pseudouridine synthase [Estrella lausannensis] >CRX37800.1 RNA pseudouridine synthase [Estrella lausannensis])

HSP 1 Score: 171.8 bits (434), Expect = 5.200e-39
Identity = 118/308 (38.31%), Postives = 166/308 (53.90%), Query Frame = 0
Query:   97 LDILLVRRFPAL-SRRACRRLLQDGKVRVNGQVITR--LSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDM 402
            LD +L  RF  + SR   + L Q+GKV VNG  + +    + G       +  P L +A+           E + L ILYEDE  +A+ K P +VV P     +GT+++ ++ H     EE  +    P  G+VHRLDK+TSGV L  K+ +   +L  LF SR + K YLA+  G+P RG     I+++PI R    +  +   +E     K AV+  ETL TDGQ+SLV++ + TGRTHQIRVH+     PVLGD +Y +          +K   +R LLHAY LSFLHP +K  +   APLP D+
Sbjct:   24 LDKILAGRFKDVKSRTYFQYLFQEGKVSVNGLPVKKQYRPRTGDLVEVQFILTPELNLAA-----------ENIPLRILYEDESLIAIDKPPGMVVHPAPGNWSGTVVNALLFHCTRLKEEFQQEHIRP--GIVHRLDKETSGVLLAAKSHSMHGKLVDLFSSRQVYKEYLAVCLGNPGRG-----IIDKPIGRDPYHRKQMKVLDE---GGKRAVTEFETLATDGQVSLVKIILKTGRTHQIRVHMQSKNAPVLGDSLYGSIAVN------KKWKAERQLLHAYRLSFLHPMTKKPITFQAPLPPDL 304          
BLAST of NO29G00100 vs. NCBI_GenBank
Match: WP_073037972.1 (RluA family pseudouridine synthase [Desulfacinum infernum] >SHF04068.1 ribosomal large subunit pseudouridine synthase D [Desulfacinum infernum DSM 9756])

HSP 1 Score: 171.0 bits (432), Expect = 8.900e-39
Identity = 123/332 (37.05%), Postives = 175/332 (52.71%), Query Frame = 0
Query:   86 FKLEGKEGTVPLDILLVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLGMASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTLLHGVMHHLVSSSEEPCEILA---SPTQ-GLVHRLDKDTSGVWLCGKTKAAASRLSSLFKSRGMVKTYLALVHGDPCRGRKGE---IIVEQPIFRKSNGKMAVPNTEEEKSKAKTAVSTVETLLT-DGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGDDVYCAADFTNKN------RHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRDMLS 404
            ++++ +E    LD+ L  +    SR  C++ +++G+V +NG+       + ++   V V +P          +   + PE + L ILYEDEH V V K P +VV P     +GTL+HG++ H        CE LA   SP + G+VHRLD++TSGV +  K+  A  RL   FK   + KTYLA  HG P R  KGE   +I   PI RK   +MAV +        K AV+   T+ + + Q++L+ VRI+TGRTHQIRVH  HLGHP+LGD  Y      ++       R     G++R +LHA  L   HP +   L   AP P D LS
Sbjct:    7 YQVQAQEAGQRLDLFLASKDAGTSRSQCKKWIEEGRVLLNGRTAKPRHPV-QAGDEVRVRVPE--------PVSPEITPEFLPLHILYEDEHVVVVNKAPGVVVHPGAGHASGTLVHGLLDH--------CERLAAQGSPLRPGIVHRLDRETSGVLVVAKSDRAYLRLIEQFKEHRVRKTYLAFAHGSP-RPEKGELRTLIGRHPIDRK---RMAVVD-----RNGKEAVTQWRTVTSWNDQVALLEVRILTGRTHQIRVHCQHLGHPLLGDPTYGGGKRKSRALPHPRIRDAVLHGVQRTMLHARRLELEHPVTGAPLVWEAPEPEDFLS 312          
The following BLAST results are available for this feature:
BLAST of NO29G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ31789.15.200e-4735.73pseudouridine synthase [Ectocarpus siliculosus][more]
EWM21217.12.700e-4370.99pseudouridine family, partial [Nannochloropsis gad... [more]
WP_051184398.11.500e-4138.46RluA family pseudouridine synthase [Desulfatiglans... [more]
OGN53471.12.100e-4036.22hypothetical protein A2Z85_03695 [Chlamydiae bacte... [more]
OQW97920.12.100e-4032.72hypothetical protein BWK77_00520 [Verrucomicrobia ... [more]
OGW50138.13.600e-4037.23hypothetical protein A2078_02140 [Nitrospirae bact... [more]
OJV10968.11.800e-3936.6023S rRNA pseudouridylate synthase [Chlamydiales ba... [more]
OYU71442.13.100e-3937.97RNA pseudouridine synthase [Alphaproteobacteria ba... [more]
WP_098037656.15.200e-3938.31RluA family pseudouridine synthase [Estrella lausa... [more]
WP_073037972.18.900e-3937.05RluA family pseudouridine synthase [Desulfacinum i... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL064nonsL064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR079ncniR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008391NSK008391Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00100.1NO29G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611575gene_10455Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100521g1gene9206Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00100.1NO29G00100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00100 ID=NO29G00100|Name=NO29G00100|organism=Nannochloropsis oceanica|type=gene|length=3915bp
ATGCACAGAAAGTGTGACTTGTGGGGAGTCCTACGGAAGGCGAAACAGCC
AAGCAAGTACGCAAACCAACCAGgtaataagacgcctacatccatcgcgg
ccgcaagctccctacaccaccacgagtacacacgccatgcaccgtctaca
cgcctccttcgtactccttcttaatgccataagtgccagccacgcattcg
tctctccttctcccatatcagTGACCACAGCCCTCCCCCGCAGCCTCCAC
AAAGAGGCCGTGGTCAGTGCCCGGCCCTGGGCGTTGCCCCGACCAGGCAT
CGGGCTCCAGACCGAGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGTGA
AAGGGCAAAATGTGGTACAAACTGCTGCGAAGGAGGAAGAGGAAATAATA
GAATTTAAACTTGAGGGCAAAGAAGgtactaagtcgtgaagtgtcgaggg
gagggatggggggagggaggagtggaatagcagcgtcttgtgactatcaa
agcactcatacgcctcgttatgaccagacggcttctgcgtgctacattcc
gacacacagactcacatcctcctaccctctcctccccattcctcccctcc
ttccctccagGCACAGTGCCCCTCGACATCCTCCTCGTCCGCCGTTTCCC
TGCGCTTTCCCGCCGAGCTTGTCGTCGCCTTTTGCAGGACGGAAAAGTTC
GCGTCAATGGTCAAGgtgggttgatgccttgccttcgaatcaatttctcc
ttccctcccatcctcatccattcactcgcaccccccccctctcacctccc
ttcctccctaccctcctccagTCATCACTCGCCTCAGTAAAATCGGCCGG
AGCACTGGCAGCGTCTCTGTTACCATGCCTACCTTAGGTATGGCTTCCGC
CTCCATTGGCCTGGGCTTCGCGCTCCTTCCCGAGAAAATGAACCTCACgt
atgtggtcctccctccctccctccctccctccctccctccctccctccct
ccctccctccctccctccctccctccctccctcgctccctccctcccttc
ctctcatccttatccgaaagccgcagtacttaccgttcccccccctctct
cttttccctctccttcaacctttccagTATTCTTTACGAAGACGAACATT
TTGTGGCGGTGGGCAAAGGTCCCCATATCGTCGTCCAGCCCTGCGAGAGC
GCCCGGACAGgtacctccctccctccctccctccctctctccctctctcc
cactcttttccctccaatcttttccctgtcggggggtctccaacgcaccg
tcgccctaggggctgctttagcatcaatacccattgccccctccctccct
ccctccctccctccctccctccctccctccctccctccctccctcggccc
cagGCACCCTCCTTCACGGCGTCATGCATCACCTCGTCTCTTCGTCGGAA
GAGCCTTGTGAGATACTGGCCTCGCCCACGCAGgtgagtaggagggccac
ggggggagggagggagggagggagggagggagggagggcgggacggcggt
cattcctgtgtagcgatgaatgagagtagaagtagaggaggagagaggtg
aggaggagggaggggaggagcggactattcacaattatgcctaccccccc
ccccaaatatatataaaccaaaccaagcaaaccaacctataagctactgg
cgcacaaacacacatgcaaataaatcgaagctctttgacacacacacact
tcaacaaccgaccaacccctcagGGTTTAGTACACCGGCTCGACAAGGAT
ACGAGCGGCGTCTGGCTCTGCGGCAAGgtacgccccccctccttcaagcc
ctccctctccttctcgacttatccccacacccctccctcccttcctccct
gcctccctgcagACCAAAGCCGCCGCGTCCCGCCTCTCTTCCCTCTTCAA
GTCCAGGGGCATGGTCAAGACCTACCTCGCCCTCGTCCACGGTGACCCGT
GTCGAGGCCGAAAAGGAGgtgactttccttccctccctccctccctccct
ccctccctttccctccctcctcccagcctccctccctccttccttcggtg
tgttctgatacgcacactctcgctggtcatgcagagcatattttatttca
cggctcgctcccttttctgatctacctgttcccttgtctccctccctccc
tccctccctccctccctccctccctccctccctccctccctcagAGATTA
TCGTCGAGCAACCAATCTTCCGCAAGTCCAACGGCAAGATGGCCGTCCCC
AACACAGAGgtacgccctccctccctccttccctccccccctccttcctt
cctccctgcctttcatcttcccttgcttccatctttcttctctccctcca
tttgtctctcgttttttccactgcattcccgtcgtccgtcctcactgccc
ctccctccctccctccctccctccctcccccccctcttacagGAAGAAAA
GTCCAAGGCAAAGACCGCCGTCTCAACAGTCGAGACCCTCCTCACCGACG
GACAgtatgacctccctccctccctccatccaccccttccttccttcctc
ctacctctccactcctcggactctgcctcgctccaccccattctgtccac
tcgctcttttcgctaagctccctccctccctccctccctccctccctccc
tccctccctccttaagACTCTCACTTGTTCGCGTCCGGATCGTGACGGGC
CGAACCCACCAGATCCGCGTACACCTCACACACCTAGgtagctccctccc
tccctccctccctccctccctccctccctccctccctccctccctccctc
cctccctccctccctccctccctcccttcctcccttctcttgttgacacc
cagatcgtgacgggtcgcccgtctgccctgcccatggccctcgaaggagg
gagggagagagggagagagggaggacagagggaggaagaaggtgtcaatc
tgtcctcccttcctccctccctccccccccgcccttcctttaaaaccttc
ttcctcaccttgtcttccctccctccctctctctctccttcgaccagGGC
ATCCGGTGCTGGGAGACGACGTTTACTGCGCGGCGGATTTCACCAACAAA
AACAGGCACCTACGCAAATTAGgttgattggaagggagggagggagggag
ggagggagggagggagggagggaggggagtgagggaggggaagggggaat
ggagtttgtctctttgcaggcatgatcgacaggtgccgaaaagcagagga
gacaggaaaggaaacatgtcagcgtgttaacggaagctcaataaacgcac
cctccaacccttccctccctcccccctttcctccctcccccctctccccc
cctctctctctctctcattctctctctccccttaagGACTAAAACGTGTT
CTCCTCCACGCCTACTCCCTCTCCTTCCTCCACCCGTTTTCGAAAACGAC
TCTCAACCTCCTGGCGCCGTTGCCGCGAGACATGCTCTCTGCCATCCACT
TTATGCTGCAGGGCAAGGGGAGCAGAGCCGGAAAAGAAGgtgcgtttctc
ctcggtttctgcttcgtcttctccttcatgtctttttaattttttgaatg
aaagctttacagcatcctcaactcagtgcatactcatacgttcccctgta
ctttttcctcattctttttcaacctcttagATGAGGAAAGGAAGCTGAAG
CTGCTTCGATTACTCCGAGACGGCAAGCCACTGACATCCGTCCTTGATTC
CGACATGGCCTCGCCCGTGCCAATATTGATCAAAACAGCAAAGGACGAAG
AGGAGTACGAAGAGGAGTGGGAGGATGAGGTGGAGGAAGCGGAGGAGGCG
GAGGAGGCGGAGTGA
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protein sequence of NO29G00100.1

>NO29G00100.1-protein ID=NO29G00100.1-protein|Name=NO29G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MHRKCDLWGVLRKAKQPSKYANQPVTTALPRSLHKEAVVSARPWALPRPG
IGLQTEGGGGGGGGGGVKGQNVVQTAAKEEEEIIEFKLEGKEGTVPLDIL
LVRRFPALSRRACRRLLQDGKVRVNGQVITRLSKIGRSTGSVSVTMPTLG
MASASIGLGFALLPEKMNLTILYEDEHFVAVGKGPHIVVQPCESARTGTL
LHGVMHHLVSSSEEPCEILASPTQGLVHRLDKDTSGVWLCGKTKAAASRL
SSLFKSRGMVKTYLALVHGDPCRGRKGEIIVEQPIFRKSNGKMAVPNTEE
EKSKAKTAVSTVETLLTDGQLSLVRVRIVTGRTHQIRVHLTHLGHPVLGD
DVYCAADFTNKNRHLRKLGLKRVLLHAYSLSFLHPFSKTTLNLLAPLPRD
MLSAIHFMLQGKGSRAGKEDEERKLKLLRLLRDGKPLTSVLDSDMASPVP
ILIKTAKDEEEYEEEWEDEVEEAEEAEEAE*
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