NO29G00090, NO29G00090 (gene) Nannochloropsis oceanica

Overview
NameNO29G00090
Unique NameNO29G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1033
Alignment locationchr29:37210..38242 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:37210..38242 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO29G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL064nonsL064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR079ncniR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00090.1NO29G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611584gene_10456Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00090.1NO29G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00090 ID=NO29G00090|Name=NO29G00090|organism=Nannochloropsis oceanica|type=gene|length=1033bp
ACCACAGTTCATTAATTCAAGGTATCACCACCATCTCGTTGAGAAGACCC
CGCATCGCACTCAAGCAATGAAAATTTTCGTCACCGTCGCGCTCCTTTCC
AGCTCCCTCGCCTTGTGCCAGGCTGTCTTCGAGCCCTCTATGGAAGgtac
gttctgctttcggtaggaacgggagcccacctgattagagataaaggcac
cacggacactccagactccaatcgtgtgattcaccttgctctgtagcatg
tcacacagtccaatgcatgtactgcccctctaattttctcccctcgggca
tccaggaaagatgaatatacatgcgctaatacatcttatgctttggttcc
gcagtcgtcctgcctgtctatttgtatcgaagctttgttccacacgattt
agaactttactcgcttatcgaccaaaaagggactcgattgtcgagattga
tcttctctgctttcatgttgaccgttttcctcacattcacgtttcactat
gacatagACGTCAATGAAAAGGTCTTCGGGAATGCACGTTCTCTTCTTGA
TGAAGACTTGCCTTTACCGAAGGACTGGGTGGCCAGCACTAAGGAGAATG
TTCCTTCCAAGACTTTTGGCGGTATCGGAGATCATTTTGGCTCCTACCCG
TACCACCCCTGGCACCCTTTCAAACCTAACCCTGACGGTAGCGGCCACGG
GGCTAAGGATGATGAAGGTCACACCGGTGGGAAGGATCTTAGTCATGGAG
GTGTAGACAAAGCTAACCCGGCTCCCAGCGGCGATCATCCGGACAAGATG
GCCGCTGTCCCCGGCGCGGTCGCCTACACGCCAAAGACACCCGTCGTCCG
CTCCCTCGAGACGATCATGCTTAAGAAATCTCAGGAAGATAAGAACACCA
TCTTCAATCTCCGCGGTCGTTAAACATCTTCTTGAGGGCCTTTTAAATAT
AACAAAAGAAAGTGTGAATGGGTGGAGGGCTGGAGGGAAGGGAAGAATGC
TGAGGGTAAGGCAAGCAAGTCGTCCTTTTCACC
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protein sequence of NO29G00090.1

>NO29G00090.1-protein ID=NO29G00090.1-protein|Name=NO29G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MKIFVTVALLSSSLALCQAVFEPSMEDVNEKVFGNARSLLDEDLPLPKDW
VASTKENVPSKTFGGIGDHFGSYPYHPWHPFKPNPDGSGHGAKDDEGHTG
GKDLSHGGVDKANPAPSGDHPDKMAAVPGAVAYTPKTPVVRSLETIMLKK
SQEDKNTIFNLRGR*
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Synonyms
Publications