NO29G00060, NO29G00060 (gene) Nannochloropsis oceanica

Overview
NameNO29G00060
Unique NameNO29G00060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length556
Alignment locationchr29:18916..19471 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:18916..19471 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Homology
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BLAST of NO29G00060 vs. NCBI_GenBank
Match: EWM29034.1 (hypothetical protein Naga_100071g15 [Nannochloropsis gaditana])

HSP 1 Score: 63.5 bits (153), Expect = 4.000e-7
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0 
Query:    1 MLEGVDVVQLSALESAIAIAIDTTFLLNSANMAEIESIKTAFVDVPY--YHFGPGQ 55
            MLE  D VQ SALESAIAIAID +FLL  A MA++E I+TAFV+VP   +H+  GQ
Sbjct:   34 MLESADAVQFSALESAIAIAIDASFLLTRAKMADVERIETAFVEVPLHRHHYQEGQ 89
The following BLAST results are available for this feature:
BLAST of NO29G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29034.14.000e-762.50hypothetical protein Naga_100071g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL064nonsL064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR079ncniR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00060.1NO29G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00060.1NO29G00060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00060 ID=NO29G00060|Name=NO29G00060|organism=Nannochloropsis oceanica|type=gene|length=556bp
ATGTTGGAAGGGGTGGACGTTGTACAGCTCTCAGCTTTGGAATCTGCTAT
TGCTATTGCCATTGACACAACCTTCCTTCTGAATAGCGCTAATATGGCCG
AGATTGAAAGCATCAAGACGGCCTTCGTCGACGTCCCTTATTACCACTTT
GGTCCTGGGCAGCACAGCAGCAGCAGCAGCACCACCACCACCACCACAAC
CACCACATGGCCCGTAAGGCCCGCATGGCGATCCGTTTGCGCAAGACGGA
CACTTTCTGGAAgtaagtgcggataggtcaagagtaattaattggaatcg
aagaattttaagaagatgattgaagaaatcgggaggggaatgtgaaaaca
aagggccgaataagaaaaaggatcaagaaagacaaccgaggcaagatcta
cacctcgataacaatacaaagtgcggcccttaggagcatgaatctcctta
tactattcttaaagacaattcagcacaaagtagtctatagaggttctcca
cataagttactcctcttacacttctagGCAGCTTGACTCCCTCTCCAACT
TCTTGA
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protein sequence of NO29G00060.1

>NO29G00060.1-protein ID=NO29G00060.1-protein|Name=NO29G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MLEGVDVVQLSALESAIAIAIDTTFLLNSANMAEIESIKTAFVDVPYYHF
GPGQHSSSSSTTTTTTTTTWPVRPAWRSVCARRTLSGSSLTPSPTS*
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Synonyms
Publications