NO28G01660, NO28G01660 (gene) Nannochloropsis oceanica

Overview
NameNO28G01660
Unique NameNO28G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4383
Alignment locationchr28:518766..523148 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:518766..523148 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01660.1NO28G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01660.1NO28G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01660 ID=NO28G01660|Name=NO28G01660|organism=Nannochloropsis oceanica|type=gene|length=4383bp
ATGAAAACAAAGCTTGAGGAGCAGGGGCTTCCCTTACCCTCCACATGCCT
GCCGTCCCTCCGTCGGCCTCTCTCTCCCTTTCGTGGCATCTCCTCTCCAG
TTGGGACACCTCGCAGGGGCCCGCCAACCGCCACTTGGCGCAGCTGTGGG
AATAGCAGCAGCAGCAGCAGCGGCAGCGGCAGCAGCAGCAGCGGCAGCGG
CAGCGGCAGCAGCTCCTTAAGGCAGCGACTAGATACACCGATGGCAGGAA
ATGGCGGAGAGGGAGGAGAGGAAGGTCGGGAGGAGAGGGAGGAGGAGCTG
GCTCGGAGACTGgtaagtccttaggccttaggtctcttttcccaatgtat
gcgtgtgtgtgtggggagaggggggagaagagtgtgtgtacgtgttgatt
tttacgtacatcgatatattcgtgtgtctgtattggggtgtgtgtgggtg
tgagtgcgtaggtgtagccgtaggtgcgtgtgggtgtagccgctcgtggt
tttgcttcaagtaacgaattacttccatggcaacgtcttcctctccattg
tcaacgctccctccctctctccctccctcactccctccctctctccctag
GTCTTGGAAGGCCGACTGAGCAGGGCTGCCATGCTCGATGCCTTGGCCCG
GCTGCAGCAACAgtacggagggagggagggagggaaagagggagggagga
agggcccggctttaaaatcgtgaataagtaaacctggatgtgaagactaa
aactctctccttcctaccctctctcctttcctccctcctctacacagGTC
CGTACCTACACAAACAGGAGCAAACAGCAACAGTGAAGAGGGAAGGAGGG
AGAGAGGGAAAGAGGAAGGGGGAAACGCAAAGCTGCTGGAGATAGTCCAG
CGGACCTCGCACTCCCTCCATTCTTCCTCTCACCCACCTACTACCTCTCT
GCTCCCTCCCTCGTTCCCTCCCTCCCCCCCCTCCTCTTTCGGCGCTACTG
CTGCTGCTGCTGCTGATGATGATGGCGATGACGATGGTAATGGAAGAGGT
GTTTCTCGTACTGCTGCTGCTACAACGAGTGACAGAAGGAGCATCAGCAG
CAGCAGCAGCAGCAGCAGTAACAGTACAAAGAAACGCCTTTTGCGGATGC
TAGCCGACAAGCGCCAACAGCAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAGCAGCAACAGCAGCAACAACAACTACAACAGCA
GCAGCAGCTACGGGAGGTGGGAGGGCGAGAAGGAGGGCGATCAAACCTTT
CCGGCAGAGAGGGAGGGAGGGAGGGAGGAAGGAGAGGAGGGGCTTTTGCA
GATCGTGCCCTGGCCTGGCAACGACAGAAGGAGGCGGAAAGAGAGCTGAG
gtaagaatggagggagggagggaagaaactacatttcgtttcgagggggg
ctctttgggagggagggagggagggagggagggagggagggaaggaagga
tggaggtttcactcatcatcctccccactatgcccagGCGAGAGGAGATG
GCGTCACACGAGCTCGACGGCTGCACCTTCCAGCCACGCATCAACCCGgt
gagtaacccctccctccctccctccctccctcccccctttcccctttttt
cggtactatccttcattaacactctccctcccttcctccctccttccgtc
cagGCGTCTAAACGCGCCATCGAAGCTCTTCGGGCCTCCCCTCCTCCCTT
TCCGGCCCGCCCgtcctccctcccttcctccctcccttcctccctccctt
cctccctccccccccttcaaccttcttcatccctcaaatcagTGAAAGGC
TGTACGAGGAAGGGAGGGAAGGGAGGAGGGTCCGGGAGCTCCGCGTGGCC
ATCGCAAGgtacagagaagggagggaggggaagcatttctttaccgtcaa
tccgacccccatccttctcccttccctccctccttccctccttcctcagA
GCCGAGGAGGAATCCCGCCTTCAGAGAGAGTGCACCTTCCGTCCGTCTAC
CTGCCACAAGAAGCAGCAGTACGACAGACACCTCCGTCAGCAGCAGCAGC
AGCAGTACGACAAACACCTCCGTCAGCAGCAGCAGTCACAGCAGCCACCG
CAACAGCCGCAGCAGCAGCAGCAGCAGTACGACAAACACCTCGGTCAGCT
GCTGCAGCAGCAGCAGGAGGTCGACACTGTCCCTCCTCAGCACCAGCACC
AGCATAATCACCATCATTACCATCACTGCTCCTCCTTCTCCTCCTTCTCG
ATGAGCGAGGGAAGGAGCGAGGGAGGGAGAGAAGGAGATATTATCAACTC
AGCCGAGCCTCCGTTCCCTCCCCCTCCCCCTCGCCCCCCTTCTCCTCCCC
CTCCTCCTCACCACCACCACCATGCATGCGAAAAGCTCGTGCTGCCAACG
Ggtacgtttcgtccctccctccctccctccttccctcccttccttccacg
agcttttcccctccaaacaccctcctttcttcctcccctccctccctccc
tccctccctccctcctttgcagGCGAGGCAGAGTGCACGTTCCATCCCAA
GACAAATCCCTTGCCTCCCGAGATGGATACTGTTAGgtaggtaggtagga
agggagggagggagggagggagggagggaggggtaagaatgactcggtag
taggctattgtttcttgtattctctgacaaccattcatactctcctccct
ctctccctccctccctccctccctccctcccttccttcatcacaacagGG
CTTACCTCTCCCTCCCCCTCATCTACCGCCTCACTCAGCCGTCCCCCCTC
TCCTCCCTCTCCCGCACACACACGCATCGCCCCCCTCCTCCCTCCCGCCC
TTCCCCCCTCCCACCTACGCAAAAAGAAAATTACGAGGAGAGGGAGCGTC
ACCTCCTTTCTCCCCTCTCCCTCTTCGATCCCCATCGAAGCGCAGTCCTC
CACCACCATCCCTCCTTCCCCCCTTCCCTCCCTCCCCAATCCCTGCACGC
CCGGGGGACGGGGAGGGAGAAGACCAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCCAAGTTCCGCT
CCGTCGCGGGTACGGCCATGCATAAACGACAGCTATAGCAGGAAAGGAGA
GGGAGGGAGGGAGGAAAGGAGGGAGGGAAGGAGGGAAGAAGGGGCAGGTG
TCCCTGCATCTTCTTTTGCTGCCTCACTGCAGGCGCTCAAGAAGAAGCTG
CGGAAGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGCGGAGGCAGCAGCAAAGGAAGAATGAGGGGG
AGAAGGGAGAGAGGAGGGGAGGGAGGGAGGGAGGGAGGGGGGGAAGGCCG
GTTTGTCATGTTCTTTTTGAGAAATGTCCTGTGTGGGGGAAGGAGGAGAC
AGGGAGGAAGGAAGGGAGGGACGGAGGGAGGGAAGGAGAGGGGAATGGGA
AGGAGGAGGAGAAGGAGAAGGGGTGTGTATTCAGGAGAGGTTTTTCAGTA
GTACAAAGAGGAAGAAGAGGGGAGACAGAGAAAGGGAGGATAGGAGGGGG
AGAAGGAAGAGGGGAGAGAGGGAAAGGAAGAGGAGGGGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGATATGCTTCTCTCCCTTTGCTTTTGCG
GACCGACAGAAGAAGGGAGGAAGAGAGGCAGGGAGGGAGAGAGGGCGGCC
TGCTTCCGCAGCAGGGGCGATTGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAAGGGAGGGGGGAAGAGGAGGAGGAGTG
CACTGGAATAAGAGgtttggactgtgggaaagcgcggccccaattccttc
ctcttcctccttcctttcctctaccccttattccctcccgccctccctca
gGCCCTCTAGTTGGAATCCTTATCCTCTTTTACTCGCTCACCCGCCACCT
TTTGCCACCGACAGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGG
GAGAGAGGGAGGGAACAGTGACGAGATGGAGGGTGGGGCCGAGGAGGAGG
AGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAGGTGGTCTTCGT
TCTGGCAACGGCAACGAGCACGAGAGGCGATTCGAAAGAAGGAAATGGAT
AAGgtgagggagggagggagggagagagggaaagagggaggggggggggg
ggcggggcgattaaaatgcttccaatgtcactgaaataatcaactcgact
tgacggaccttgccctccctcccttccagCTGA
back to top

protein sequence of NO28G01660.1

>NO28G01660.1-protein ID=NO28G01660.1-protein|Name=NO28G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1017bp
MKTKLEEQGLPLPSTCLPSLRRPLSPFRGISSPVGTPRRGPPTATWRSCG
NSSSSSSGSGSSSSGSGSGSSSLRQRLDTPMAGNGGEGGEEGREEREEEL
ARRLVLEGRLSRAAMLDALARLQQQSVPTQTGANSNSEEGRRERGKEEGG
NAKLLEIVQRTSHSLHSSSHPPTTSLLPPSFPPSPPSSFGATAAAAADDD
GDDDGNGRGVSRTAAATTSDRRSISSSSSSSSNSTKKRLLRMLADKRQQQ
QQQQQQQQQQQQQQQQQQQQQQLQQQQQLREVGGREGGRSNLSGREGGRE
GGRRGGAFADRALAWQRQKEAERELRREEMASHELDGCTFQPRINPASKR
AIEALRASPPPFPARPERLYEEGREGRRVRELRVAIARAEEESRLQRECT
FRPSTCHKKQQYDRHLRQQQQQQYDKHLRQQQQSQQPPQQPQQQQQQYDK
HLGQLLQQQQEVDTVPPQHQHQHNHHHYHHCSSFSSFSMSEGRSEGGREG
DIINSAEPPFPPPPPRPPSPPPPPHHHHHACEKLVLPTGEAECTFHPKTN
PLPPEMDTVRAYLSLPLIYRLTQPSPLSSLSRTHTHRPPPPSRPSPLPPT
QKENYEERERHLLSPLSLFDPHRSAVLHHHPSFPPSLPPQSLHARGTGRE
KTREGGREGGREGGREGGREGGRPSSAPSRVRPCINDSYSRKGEGGREER
REGRREEGAGVPASSFAASLQALKKKLRKREEEEEEEEEEEEEEEEEEEE
RRQQQRKNEGEKGERRGGREGGRGGRPVCHVLFEKCPVWGKEETGRKEGR
DGGREGEGNGKEEEKEKGCVFRRGFSVVQRGRRGETEKGRIGGGEGRGER
GKGRGGGRGGGGGGGGGGICFSPFAFADRQKKGGREAGRERGRPASAAGA
IGGGGGGGGGGGGGGGGGREGGRGGGVHWNKRPSSWNPYPLLLAHPPPFA
TDSEEEEEEEEEEGGREGGNSDEMEGGAEEEEGGRRRRRRRRRGGGLRSG
NGNEHERRFERRKWIS*
back to top
Synonyms
Publications