NO28G01620, NO28G01620 (gene) Nannochloropsis oceanica

Overview
NameNO28G01620
Unique NameNO28G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4008
Alignment locationchr28:509701..513708 +

Link to JBrowse

Properties
Property NameValue
DescriptionLateral signaling target protein 2 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:509701..513708 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0032266phosphatidylinositol-3-phosphate binding
GO:0046872metal ion binding
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0000910cytokinesis
GO:0000724double-strand break repair via homologous recombination
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR028730ZFYVE26
IPR000306Znf_FYVE
Homology
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BLAST of NO28G01620 vs. NCBI_GenBank
Match: XP_009038393.1 (hypothetical protein AURANDRAFT_65069 [Aureococcus anophagefferens] >EGB07169.1 hypothetical protein AURANDRAFT_65069 [Aureococcus anophagefferens])

HSP 1 Score: 83.2 bits (204), Expect = 3.900e-12
Identity = 72/204 (35.29%), Postives = 90/204 (44.12%), Query Frame = 0 
Query:   68 WVRDEAYEACMACASEFTLTRRRHHCRRCGRLVCHACSQNRLFLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVCDACFSSQVVR--NEALEARRQQAKREAALLSKGSLVGGLSSRVVRVFFLDGSYKAVCFNESTTASVLXXXXXXXXXXXXXXXXXXXSSLPPVALFQVEKNFLHMDQFTYVSPDELIVDVLSRW 270
            WVRD+    C  C  EF+  RRRHHCRRCG L C  CS+N + LS                                  VCD C+SS   R    +L A     +   A  + GS+V G    + RVFFLDGS+ AV    +T+A+ L         XXXXXX     +  P  LF+  +  L  D    V+P E   DVLSRW
Sbjct:   17 WVRDDTSSHCFGCEREFSFARRRHHCRRCGGLYCGGCSRNSMSLS--------------------ALAMDGGPAGREERVCDDCWSSHQERLFLRSLAAEGDGDRGGDAEAAAGSVVAGRED-LCRVFFLDGSFVAVDVAAATSAADL---------XXXXXXELRLPAAVPFPLFEARRGAL--DVLEAVAPVERAADVLSRW 188
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BLAST of NO28G01620 vs. NCBI_GenBank
Match: XP_013760956.1 (WD repeat and FYVE domain-containing protein 3 [Thecamonas trahens ATCC 50062] >KNC56444.1 WD repeat and FYVE domain-containing protein 3 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 67.8 bits (164), Expect = 1.700e-7
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0 
Query:   50 FAGREGGRCASSGLP----SLEWVRDEAYEACMACASEFTLTRRRHHCRRCGRLVCHACSQNRL 110
            ++G   GR  S  LP    S  WV+DE+ +AC ACA  FTL  RRHHCR+CGR+ C ACS N++
Sbjct: 3414 YSGDVLGRVFSWSLPDGGSSDYWVKDESVKACTACALTFTLLERRHHCRQCGRIFCSACSSNKV 3477
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BLAST of NO28G01620 vs. NCBI_GenBank
Match: XP_001742397.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ92635.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 65.9 bits (159), Expect = 6.400e-7
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 0 
Query:   45 SALPSFAGREGGRCASSGLPSL------EWVRDEAYEACMACASEFTLTRRRHHCRRCGRLVCHACSQN 108
            SA   + G + G   S  LP +       W  D+A  +CM C ++FTLT RRHHCR CGR+VCH CS +
Sbjct:  617 SAGKVYTGSDNGHVYSWTLPDVAGQSNDHWADDDAATSCMECGTKFTLTARRHHCRNCGRVVCHKCSSH 685
[Close]
BLAST of NO28G01620 vs. NCBI_GenBank
Match: XP_008698724.1 (PREDICTED: zinc finger FYVE domain-containing protein 26 [Ursus maritimus])

HSP 1 Score: 65.9 bits (159), Expect = 6.400e-7
Identity = 38/85 (44.71%), Postives = 46/85 (54.12%), Query Frame = 0 
Query:   36 AAFLALPRVSALPSFAGREGGRCASSGLPSL----------EWVRDEAYEACMACASE-FTLTRRRHHCRRCGRLVCHACSQNRL 110
            AA +A P VS + S + RE     S  LP            +WV DE+   CM C  E FT+  RRHHCRRCGRLVC ACS  ++
Sbjct: 1771 AAAVAAPGVSTIHSPSPRERSFPESQPLPEFVPPATPPGRPQWVPDESASICMVCCRERFTMFNRRHHCRRCGRLVCSACSTKKM 1855
[Close]
BLAST of NO28G01620 vs. NCBI_GenBank
Match: PIO68677.1 (FYVE zinc finger [Teladorsagia circumcincta])

HSP 1 Score: 65.9 bits (159), Expect = 6.400e-7
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0 
Query:   47 LPSFAGREGGRCASSGLPSLEWVRDEAYEACMACASEFTLTRRRHHCRRCGRLVCHACSQNRL 110
            LPSF G             + WV DE  E C AC++ FT+ RRRHHCR CGR+ CH CS+N +
Sbjct:  182 LPSFIG-------------VRWVPDEDCEQCTACSAAFTVVRRRHHCRNCGRIFCHRCSRNSI 231
The following BLAST results are available for this feature:
BLAST of NO28G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_009038393.13.900e-1235.29hypothetical protein AURANDRAFT_65069 [Aureococcus... [more]
XP_013760956.11.700e-751.56WD repeat and FYVE domain-containing protein 3 [Th... [more]
XP_001742397.16.400e-744.93hypothetical protein [Monosiga brevicollis MX1] >E... [more]
XP_008698724.16.400e-744.71PREDICTED: zinc finger FYVE domain-containing prot... [more]
PIO68677.16.400e-747.62FYVE zinc finger [Teladorsagia circumcincta][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01620.1NO28G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01620.1NO28G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01620 ID=NO28G01620|Name=NO28G01620|organism=Nannochloropsis oceanica|type=gene|length=4008bp
ATGGAGCAAGACGAGGATGACGCCCTCTTTGCGTCTAGTTACACCTCTAC
GTCCATCGATATCGATGAAAGCCAACAGCGGCAACAACAACATAAGGAAG
GCGAAGCTGCTTTTCTCGCCTTGCCGCGCGTCTCAGCCCTCCCTTCCTTT
GCAGGGAGGGAGGGAGGGAGGTGTGCGTCATCAGGGTTGCCCTCCTTGGA
ATGGGTGAGGGATGAGGCTTATGAGGCGTGCATGGCCTGTGCGAGTGAAT
TTACACTGACGCGACGACGACATCATgtaggaagggagggagggaggaag
gaaggaagggagggaggaagggcacaaagagaataatagagcagacttgg
atcgagcatttacacttttattattgagacaaattgctgcttctagcact
cagcaaacgctccttctttctttcctccctcccatccctccctcccatcc
ctccctccttgtagTGTCGTCGCTGTGGTCGTCTGGTTTGCCACGCCTGC
TCACAAAATCGTCTCTTCTTGAGCAAAAATAATGGGAATGAGGGAGGGAA
GGAAGGCGGGCAGGAAGAAGAGCACCAGCAGCAACAACAGCCTCCCACAA
CGTCACCAAGGAAGAAAATGAGGAGGGTGTGTGATGCGTGTTTCTCGTCC
CAAGTGGTTCGGAACGAAGCCCTGGAGGCGCGAAGGCAGCAGGCGAAGAG
GGAGGCCGCTCTATTGTCGAAAGgtgagggaggcaggaagggagggaggg
aaggagggagggaaggcatgaaggaggcgcgatggcagcaggcggagagg
taagggaggcggtgttggtgtcgaaaggtgagggagggaggagggaggga
gagagggagggaaggaaggagtgtctgaatccaagagtgagatagtgagg
cacctggcgatgaacccacccttctcccctccctcctcttccctcgtccc
tccctccctcccagGGTCCTTGGTCGGTGGCCTGTCTTCGCGCGTGGTCC
GGGTATTTTTCTTGGACGGCAGCTATAAGGCCGTGTGCTTTAACGAGAGg
tgagggaaggagggagggagggaatgagagagggggggagggagtggcat
gcgtcccgagttccattttccttctcacctactgcccccccctccctccc
tccctcccttcttcttgcacgcaccaacacagCACGACGGCCTCCGTCCT
GGCCACCCAGATCGTGCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCC
CTTCCTCCTCGTCTTTACCTCCCGTGGCTTTGTTCCAAGTGGAGAAAAAT
TTTCTGCACATGGACCAGgtacgccctcccttcctcccacccttcctccc
tccctccctccctccctccctccctccctccctccctccctccctccctc
cctccctccctccctccctccctccctccctccctccctccctccctccc
ttccttcctccctccctccctcctcatcatgtctgccgcctcgagcccgc
atccttctgacctccaaatcctcctacacttccctttccttccatgtgac
cccccttccctccctccctccctccctccctccctccctccctccccagT
TCACCTACGTCTCTCCCGACGAGCTCATCGTGGACGTGTTGAGCCGCTGg
tgtctcgctggggaaaaaatgcgcgtggccaagctcatccttcccctcta
tcgggcacctgacgcagGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGCG
GGAGGAGGAGGTGGGGGGGGCTTCGCCGGTGCGTTCGTTGCCTGGAGGAG
GAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGAGGGAGGG
AAGGAGGGAGGGATGGGAACGCCGAAGCGACGGTTGTCGCAGGGGGGAGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGTTATCGATGA
CTCCTTCAGAGATGGAGGTGAGGGAGGACATGGAAGATTGGAGAATGAAG
CACGAGGAGTTGCAGCAACGgtaagccttccctccctccctccgtccccc
cttacctccctccttccgtccctccatcccttttgtgtcttgtgggtgac
tgcaagaaacagatcgtcttcatcctccctccctccctccccccctccct
ccctccctagGCATGAGCAGCTGCAGCGACAAAATGCTCGACTTGCGCAC
CGACTGGCCATCCTTAAGAAGGGGAGGGGAGGGAGGGAGGGAGGGAGGGA
GAGAGGGAGGGAGGGAAAACGGAGTAAAAGAGGAGGAGGAAGAGGACTAG
CCACAGGGCCTTCAAGGTGGGATGGTGAGAGAGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGGTGTCCATCCCCCTCCCTTGGAAGTTCCGCC
CCGAAGCATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGGG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGCGTGTCGAGCACCCGA
ATGTCTCTGTTGATCCGTCCGTCGAATCGTGGATCATTCCCTGCCTCTGC
TTCCCCTTATGAAGGAGGATGGGAGGGAGGGTGGGAAGGAGGGAAGGAGG
AGGAGGGGATGGGCGAGGTGGAGAGGCAGCACGAACAGCGGCAAGAACAG
CGGCAGCAGCAGCAGCAGCAGCAGTACGACAAACACCAGCAGCAGCAGTA
CGACAAACACCAGCAGCAGCAAAAAGAGAGAGAGAAGGCGGCAACGCTGG
ATTTCTCTTTTCTTCCTCAAAAAGCGAAGTGGGAGGAGGGAGGAAGGGAG
GGAAGGAGGGAGGGAGGGAGGATCAGGACGAAATGGAAGGAGGCGAAGGG
GGAGGGGGAGGGGGACGAAGAGGAGGAGGAGATGGTGGGCTGTGTCTCCT
TCCTTCCCGTCTTCAACAGAAAGGTTCGAGAGAGCTTTTCGTTTCTCTCC
AATAGGGGAGGGAGGGAGGAAGGGAGGCGATATGCCGTGGTGTACCAGgt
aaagaagggagggagggagggacagagggagggagggagagagggaggga
gggagggagagaggcgatatgccgtggtgtaccaggtaaagaagggaggg
agggagggacagagggagggagggagagagggagggagggagggagagag
gcgatatgccgtggtgtaccaggtaaagaagggagggagggagggaggga
gggagggagggagagagggagggagggagggagagaggcgatatgccgtg
gtgtaccaggtcaagaagggagggagggagggacagagggagggagagag
ggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnccctccctccctccctcagGTCAAGGCGCTCCTACATGTGATATCCCT
ACTGGACATCGCCCTCCCCTCTATCCCTTCCTTCGCTCAATCCACCCTCG
TGCCTCTCTTTGGGGTAACGGCCTCCCAACGGCTTGTGCGGGCGTTACTC
CGTGTCAGGTGGGAAGGAGAGGGAGGAAGGGAGGGAGAGGGGGGGGAAGG
GGGAAAGGAGAAGGTTCGAGAGAAGGTGGCAATGCTCCAGCCCTGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAAGAGGGAGGAAGGGAGGGGAGGGA
GAGATAAAGATACGCTTGAATTTTGGCGGAGGAGGAGGGCTGTTGAGGGC
TTGGTCCTTGGAGTGAGGGGAGGGAAGGAGGGAGGGAGGGAGGGGAGGGA
AGAAGGAAGGGAGGGCGGAAGAGAGAGTGAAGGATTGCGGGCGGACAGGC
GATATAACGCAGTCATTCGGCCGTCATTTTAAATTTTCAAAAATAATTCA
AACTTGAAAAGTAGGGTAAGGGTATGAAGACGACAGACAAAGCACCAAGA
ATGAATTGAAAGAAGAGGGAGAAGGTGTGTTTGAACTAACGATGAACGAT
GAGGACGA
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protein sequence of NO28G01620.1

>NO28G01620.1-protein ID=NO28G01620.1-protein|Name=NO28G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=764bp
MEQDEDDALFASSYTSTSIDIDESQQRQQQHKEGEAAFLALPRVSALPSF
AGREGGRCASSGLPSLEWVRDEAYEACMACASEFTLTRRRHHCRRCGRLV
CHACSQNRLFLSKNNGNEGGKEGGQEEEHQQQQQPPTTSPRKKMRRVCDA
CFSSQVVRNEALEARRQQAKREAALLSKGSLVGGLSSRVVRVFFLDGSYK
AVCFNESTTASVLATQIVPSLPPSLSPSLPSSSSLPPVALFQVEKNFLHM
DQFTYVSPDELIVDVLSRWGGREGGREGGREEEVGGASPVRSLPGGGGGG
GGGGGGGGGREGGKEGGMGTPKRRLSQGGGGREGGREGGREGRLSMTPSE
MEVREDMEDWRMKHEELQQRHEQLQRQNARLAHRLAILKKGRGGREGGRE
RGREGKRSKRGGGRGLATGPSRWDGEREEEEEEEEEEEEGVHPPPLEVPP
RSMEEEEEEEEEEGEGGREGGREGGRESVSSTRMSLLIRPSNRGSFPASA
SPYEGGWEGGWEGGKEEEGMGEVERQHEQRQEQRQQQQQQQYDKHQQQQY
DKHQQQQKEREKAATLDFSFLPQKAKWEEGGREGRREGGRIRTKWKEAKG
EGEGDEEEEEMVGCVSFLPVFNRKVRESFSFLSNRGGREEGRRYAVVYQV
KALLHVISLLDIALPSIPSFAQSTLVPLFGVTASQRLVRALLRVRWEGEG
GREGEGGEGGKEKVREKVAMLQPWEGGREGGREGRGRKGGEGEIKIRLNF
GGGGGLLRAWSLE*
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Synonyms
Publications