NO28G01520, NO28G01520 (gene) Nannochloropsis oceanica

Overview
NameNO28G01520
Unique NameNO28G01520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4702
Alignment locationchr28:481686..486387 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:481686..486387 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011685LETM1
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01520.1NO28G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01520.2NO28G01520.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01520.1NO28G01520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01520.2NO28G01520.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01520 ID=NO28G01520|Name=NO28G01520|organism=Nannochloropsis oceanica|type=gene|length=4702bp
CTGGGTTATTATTTAAATCTTTCAGGTTTGACAATGACCATTACAATACC
ATCGATGGACACCTTCATTCGACAACCTCATCTCTTTACACGTTTCGCCT
TTTGCATCTGTCTTTGCCCTCTTTCCCTATGCTGGAGCATGCAGCTCGCA
ACACGCTGGTAATAAGAAGCACTCAGCCCCGCAAATATCTTACCCTTATT
TCATTTACACTTCTCCTCGCCTCATCCCTCCCTCCCTCCTCACATCATCA
AGCGGGCAAACCCCAAGCCTACCGTCAAGAGGGACAGAAGCGTCCCCGCA
CCATATTGGACGACTCGCTTCTCCACCTGGGCAATCTCGTTCTGTGCGAG
AGGGGGAGTAGGAAGGGATGGAAAGAGGGATGAAGAGCATTTGAGTGACG
CATAATATCATGCAAACATGAGCCATAGATCAATGGTGTAGAATTGAAGG
CCTCCCTTTCCTCCATCCCTTTTCTCCGCCTTCCTCCGGACCTGCAGCAC
GGATACTCGCTGTTCCATGAGTTCCCTCCGCGTCAAATGCCGGTCGGTCA
GGACCTTTTCCACATTTGACATTTCTTTCTCAAGCTTCTGATACTCGGCA
TGGATGGATGCCTTAAATTCGGACCTGAGCAGGGAGGTGTGGAGGGAGAG
TGGGAAAAAAGGAGGGAGGCACGTCATTGGTGGAGTCCTCTTGAACAAGT
TACGATATGTATATCCGAGTCCTTATTCTCTTTCAACCAACAAAGTCCGT
GTAAATGCACGCAGGCGACCCTTCTTCTCAACGCCATTTTCCTCCTCTCT
CTCCCTTGCTCTTGTTGCTCTTCGTACCGCACGGACATAAGATCTTTTTC
GATCACTTCCTTGCTGTGCCGTTGAGCAACGTCAAAACGCATGGTGCTGC
TGAATAGTTTCTCGCTCAGCTCGGTCTTGAGGTCGAGCAGGTCCCGGCGA
GTGGCAATCTACGCATTCAAAATCATGTGTGATGGATTTAGATGTCAAGG
TTTTGAGTGTCACAATCGCCTGGTCGACTTAGGGTCGGCTGTGCACAGTG
CCATGGAGGTTGTGGCTCTTCATTTAAAGCCGACTTGAGACCGTTTCCTC
TCCCTCGCTCCTGCCCTGTAAATCCTTTCCTCGTTCACCCCTACGTACCA
TTGCTGTGCTTTTCAGCGTGGACTCCTCCATTCCCGCGACGACTACCCGT
AGGATCGCTTCAGCTTGGCCTTTGCTAAAACCGGCTTCTTGCAGAGACTC
GGCGACCTAGGGCGGCGCATGAGAGGAGGGAGGACAGGAGACAAGATCGA
ATACAATTAGGGAGGATAAGGCATTAAAGAAGCAAGCATTCGTATCGCTC
AAGACTGTCAAGGCAGAATGTAGGAAGTAAGGTGGAAAGGTAGGGAAGGG
GAAGGTATGAAGATGATAAAGGCATGTATCGTCTCTTCCTCACCTTGTAG
GTGTCAAAGGACACGACCGCCTTACCCGGGCCGAGGACAGAGGCCGGAGT
CTGCACAGTTGATAAGGAGGGGCTCGATGAGGAAGAAGAGGCGAAGGGGG
TGGAGAAGAGCGGGGGGGCAACGCCAGACGAGGAGGGCGTAGAGGAAGGA
GGTGTAGAGGTAGGCGTGGGGGAGGAGGAGGAAACGAGGCGGCATTGACG
GCAAGCAGTCGACTGAAGCAACCGGCGGCCGGAGATAAGCATTTTGCCTG
AATCGGGCCGTGTATCCAGGTGGAATCAGGGTATACGAAGGGTGGTGGGA
CGTCTCCGAGAGGGAGGTAGGAGTTGTACAACACTGGGGTGTGAGATGGG
GTGAGGGAGGGCATGAGTCGGATTGGTCTCAGCTACAACTGCAAGGCCTG
CAGCTCCTGAGGCGGCTACTCCTGTGCATGTTGTGCATCCTGCTGCAGTC
GATTATCGAATATTCGCCTCAACAGCTGTGTCTGAGGTCCTTGTAGGCTG
GATGGGACACATGGGCTTGTTGGTCCGTTGCGGCGTTCAAGGAAGTTGGG
CGAGAGTAAGCACCCTGACCCCTTCTGAGTACACACAGACAGTCTCCACA
GACGACACAACCCCAGGGGAGAGACAAGCGTTCACATCTGAAGGGGATGT
GTGCATGCAAGAAAAGTGCTACTCCGCCCTCAACAAGCCAGCCAAACACA
CTTTTGCCTCTTCGACCTCCCTGACCTCCCTCCCTCGTCCTCATCCTCTT
CAGCCACCTCCCTGTTTTCTACCGTTATATTAGCGAATCACAGACACACC
TGACGACCAACGCAATGCTGCGCCTCCGTCAGCATGCTGCCACTTCTTGC
TCAGCCGTCTTCCGGCCCGTTTCCTCCCTTTATCTCCTTCCCGTGACCTT
CCAGCCTCCCCTCCCCCCAACTCGTCCTCCCACCCGTCCTCCCATCCGCC
CTGCTTCGTCATCCTCCCGAAAAACCAGCCCCTCATCAGCTAAGGACTTT
ATGGATAAGAGCTTGGGGTATATGAAGAAATTCGGTGGCGGAATGAAGAA
TCTTTACGGAGACGGAAAAgtgaggggcgggaaggacggaagcagggagg
gagggaatgagggatcactaagcgtaccgacatgtgcacatatttcacac
gatctttacctttttttcttccgctcgttccctttgtaactcacagAAAG
CTTTCAATGCCTACCGCTCACTCAAGGCCACAGCTTCCTTCTTCCCCTCT
CCTTCCTCTTCCTCCGCCTCCTCCTCCGCCTCCTCCTCCGCCTCCTCCTC
CTCCATCTCCCCTCCGCCCTCCCTCCTCTCCCTCCGCGAGGACTACCGCA
TCTTGAGGGACACCCTTTCCTCCTTCCTCAAGCTTTTCCCACTCATCCTA
ATCTGGATCCCGCCGGGACTGGGTTTAATCCCCGTGGTGTTGTATGTCTA
TTTCCCGAGGGAGATGTACACCAAGgtaaggaggccatccctccctcccc
ccctccctcaccccctcctttcttcctccctccctccctcattccttgtt
atgatgatctgtaatttttctggacatggagagggagggagggagggagg
gagggagggagggagggagggagggagggagggtgggtggaagcgaccga
cgaaccgggtgacaagccgtcctacagacctacacttaactgccctccct
ccctccctgcctgcctgcctgccttcctccctgcctgcctagCACTTTTG
GACCGACGCGGAGAAAGCGCTTTACTTGAACGAACAGTGGCATCTGCGTA
AAGCGAACTTTTCCGGCCTGAGGAAGGAGGTAGCCAAGACGCTTGCCAAA
GCAGCCGTAACAACAGCAGGAGCAGCAGGAGCAAGAGCAGCAGCCGTAAC
AACAGCAGGAGCAGCAGGAGTAACAACAGCGGCAGCAACAGACGTGGATG
AAGAAGGAAAGAGGAAAGgtaggtaagagtgaagacatttgagacgaccg
gctagcacacccctccctctccccctccctatctttccccccctctccct
ctctcccttcctccctctcttcctccctcttttgacacttcaaaaggcgg
ttctcccttcttcttacattccctcgctctctccctcctccctttcctcc
actgccacctacctccccgtgtcccacctcaccttccccttcctccctcc
ctcccttccttagTTCCGGAGGTAGCCCTCTGGTCGCACCATGCCCTGTT
CTTCGAGGGGAGGAAGGACGACGGCCAGGGCCAAGGGCCACTCTCCCTTT
CCTCCCTCCCTCCCTCCCACCTGCGCTTGCTGGCCAAAGCGAATCAATTA
ATGAAGGTGGAATGGATGGTGGAGGCCGCCCCTGTGCCCTACCTCCGATG
GCTGCTGCAGAAGAAGGCGAATGAGGTAGAGGGAGAGAGGGAGGGAAGGA
GGGCGGGGGGATAAGAAAAGGGGGGGGTAGAAATAGAAACTGCCTATTAT
TAATATTAATATAGTCTGCGGTGGTATGTTCAGAGGAGAGGAAATGGAGT
CACTTCCTGCCTCTTTCTGAATCGCGCCATTTGCCCCTTCAGAACGCTGG
TTCTCATAATATTCGTCATTCTCCTCCTTCCTCCACCTCTCCCTCTCTCT
CACCTTTCCTTTCAGATCTACATTGACGATCTCTTTCTTCAAGCGGCGTC
TGCCTCGCCCTCCCCTCCTTCCTCCCCCCCTTCCTCCCTCTCGCCCAGCG
CTTTCCAGGAAGCCTGCGATGCTCGCGGGCTCCCTTTCGTACCCATATCC
TCCTCTTCCTCCTCTTCCTCCTCTTCCTCCCCCTTTCCTTCCTCCCTCCT
CCTCTCCCGCTGGCTCTCCATTTACTCCTCTTTCACCTCTCCCTCCCTCA
CGTCCTCCCTCAATCCCTCCCCCTACTCCTTGTGGTGGCCAGGTGCATCC
ACCTCCGCAGCTGACACGCTTCTCAAGCAGCTGGCCGCTAAGGCAGGGAA
GGAGGGAGGGAGGACTGTGATCCCTCCGCCCGCCTCGCTGCTGTTGCACA
TGCCGGCCCTGCTGCAGAAGGAGCTGGAGGCTTTGGTGGTGGTAGGGAAA
GAGGGAGAAAAGAGGAAAGAGGCGTGAACGATAGAGAAGGGAAACAGCGG
GATATCAGACTGTGTACAGCACCATAGAGAACGAATACATAAATATTAGT
GATTTCAAGAGAAAATCAATCAAGAATGACGGGACGATATCAAATTTCGT
TG
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protein sequence of NO28G01520.1

>NO28G01520.1-protein ID=NO28G01520.1-protein|Name=NO28G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MLRLRQHAATSCSAVFRPVSSLYLLPVTFQPPLPPTRPPTRPPIRPASSS
SRKTSPSSAKDFMDKSLGYMKKFGGGMKNLYGDGKKAFNAYRSLKATASF
FPSPSSSSASSSASSSASSSSISPPPSLLSLREDYRILRDTLSSFLKLFP
LILIWIPPGLGLIPVVLYVYFPREMYTKHFWTDAEKALYLNEQWHLRKAN
FSGLRKEVAKTLAKAAVTTAGAAGARAAAVTTAGAAGVTTAAATDVDEEG
KRKVPEVALWSHHALFFEGRKDDGQGQGPLSLSSLPPSHLRLLAKANQLM
KVEWMVEAAPVPYLRWLLQKKANEIYIDDLFLQAASASPSPPSSPPSSLS
PSAFQEACDARGLPFVPISSSSSSSSSSSPFPSSLLLSRWLSIYSSFTSP
SLTSSLNPSPYSLWWPGASTSAADTLLKQLAAKAGKEGGRTVIPPPASLL
LHMPALLQKELEALVVVGKEGEKRKEA*
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protein sequence of NO28G01520.2

>NO28G01520.2-protein ID=NO28G01520.2-protein|Name=NO28G01520.2|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MLRLRQHAATSCSAVFRPVSSLYLLPVTFQPPLPPTRPPTRPPIRPASSS
SRKTSPSSAKDFMDKSLGYMKKFGGGMKNLYGDGKKAFNAYRSLKATASF
FPSPSSSSASSSASSSASSSSISPPPSLLSLREDYRILRDTLSSFLKLFP
LILIWIPPGLGLIPVVLYVYFPREMYTKHFWTDAEKALYLNEQWHLRKAN
FSGLRKEVAKTLAKAAVTTAGAAGARAAAVTTAGAAGVTTAAATDVDEEG
KRKVPEVALWSHHALFFEGRKDDGQGQGPLSLSSLPPSHLRLLAKANQLM
KVEWMVEAAPVPYLRWLLQKKANEVEGEREGRRAGG*
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Synonyms
Publications