NO28G01480, NO28G01480 (gene) Nannochloropsis oceanica

Overview
NameNO28G01480
Unique NameNO28G01480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1326
Alignment locationchr28:469511..470836 +

Link to JBrowse

Properties
Property NameValue
DescriptionPre-rRNA-processing protein TSR2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:469511..470836 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019398Pre-rRNA_process_TSR2
Homology
[Close]
BLAST of NO28G01480 vs. NCBI_GenBank
Match: EWM20644.1 (Pre-rRNA-processing protein TSR2 [Nannochloropsis gaditana])

HSP 1 Score: 230.3 bits (586), Expect = 6.700e-57
Identity = 106/140 (75.71%), Postives = 124/140 (88.57%), Query Frame = 0 
Query:   20 VNMEEACALFRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVREVCGKEAEVLRLQQRWGEVSREA 160
            V M+EAC+LFRQGVTSVF+QWMVLHLAV+NNWGGGDSYRKAT+LLEETLRLF+P  L R AHRPKK+P+ ++LEEKLGDY+EEQFGTL+EDGSLEEVSA VC LWE+CK+G +EGV +VC +EA VLRLQQRW E   E+
Sbjct:   56 VRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFES 195
[Close]
BLAST of NO28G01480 vs. NCBI_GenBank
Match: XP_005855069.1 (dt1p1a10l protein [Nannochloropsis gaditana CCMP526] >EKU21292.1 dt1p1a10l protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 203.8 bits (517), Expect = 6.700e-49
Identity = 92/117 (78.63%), Postives = 108/117 (92.31%), Query Frame = 0 
Query:   22 MEEACALFRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVREV 139
            M+EAC+LFRQGVTSVF+QWMVLHLAV+NNWGGGDSYRKAT+LLEETLRLF+P  L R AHRPKK+P+ ++LEEKLGDY+EEQFGTL+EDGSLEEVSA VC LWE+CK+G +EGV +V
Sbjct:    1 MDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKV 117
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BLAST of NO28G01480 vs. NCBI_GenBank
Match: OQR98388.1 (hypothetical protein THRCLA_06723 [Thraustotheca clavata])

HSP 1 Score: 88.2 bits (217), Expect = 4.100e-14
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 0 
Query:   29 FRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVREV 139
            F  G      +W  L +A+   WGGGD  RK  ILLEE L LF          + +K+   DDL   + DYIE +FG + EDGS++EVS ++C   E+CKQG    +RE+
Sbjct:   22 FELGAKLALARWTALRMAMEGEWGGGDMKRKFEILLEEILHLF----------KYQKLVQYDDLAVNIEDYIESEFGLVCEDGSVDEVSKILCACAEECKQGEFGRIREL 121
[Close]
BLAST of NO28G01480 vs. NCBI_GenBank
Match: XP_008615259.1 (hypothetical protein SDRG_11017 [Saprolegnia diclina VS20] >EQC31418.1 hypothetical protein SDRG_11017 [Saprolegnia diclina VS20])

HSP 1 Score: 87.8 bits (216), Expect = 5.400e-14
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 0 
Query:   29 FRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVREV 139
            F  GV     +W  L +A+   WGGGD  RK  ILLEE L LF          + +K    DDL   + DYIE +FG + EDGS++EV+ ++C   E+CKQG  E +R++
Sbjct:   22 FELGVKLTLARWTALRMAMEGEWGGGDMKRKCEILLEEILHLF----------KYQKQVLFDDLAVNIEDYIESEFGLVCEDGSVDEVAKVLCACAEECKQGQIERIRQL 121
[Close]
BLAST of NO28G01480 vs. NCBI_GenBank
Match: XP_012196186.1 (hypothetical protein SPRG_02247 [Saprolegnia parasitica CBS 223.65] >KDO33440.1 hypothetical protein SPRG_02247 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 87.8 bits (216), Expect = 5.400e-14
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 0 
Query:   29 FRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVREV 139
            F  GV     +W  L +A+   WGGGD  RK  ILLEE L LF          + +K    DDL   + DYIE +FG + EDGS++EV+ ++C   E+CKQG  E +R++
Sbjct:   22 FELGVKLTLARWTALRMAMEGEWGGGDMKRKCEILLEEILHLF----------KYQKQVLFDDLAVNIEDYIESEFGLVCEDGSVDEVAKVLCACAEECKQGQIERIRQL 121
[Close]
BLAST of NO28G01480 vs. NCBI_GenBank
Match: OQR97029.1 (hypothetical protein ACHHYP_12847 [Achlya hypogyna])

HSP 1 Score: 82.0 bits (201), Expect = 3.000e-12
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 0 
Query:   29 FRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVREV 139
            F  GV     +W  L +A+   WGGGD  RK  ILLEE L LF          + +K    DDL   + DYIE +FG + EDGS++EVS ++C   E+ K+G    VRE+
Sbjct:   22 FELGVKLTLARWTALRMALEGEWGGGDMKRKLEILLEEILHLF----------KYQKQVLFDDLAINIEDYIESEFGLVCEDGSVDEVSKVLCACAEEVKKGEFARVREL 121
[Close]
BLAST of NO28G01480 vs. NCBI_GenBank
Match: XP_024572423.1 (Uncharacterized conserved protein [Plasmopara halstedii] >CEG36054.1 Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 0 
Query:   29 FRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVR 137
            F   V  V  +W  L +A+   WGGGD+ RK  ILLEE L +F          +  K   AD + + +G Y+E +FG + EDGS+EE+S L+  L ++CK+   + V+
Sbjct:   28 FEYSVKLVLARWTALRMAIEGEWGGGDTRRKYEILLEEILNVF----------KYNKTVYADAMSDNIGGYVESEFGLICEDGSVEEISTLLTVLADECKKAQYDRVK 125
[Close]
BLAST of NO28G01480 vs. NCBI_GenBank
Match: ETI39868.1 (hypothetical protein F443_14592 [Phytophthora parasitica P1569] >ETL86710.1 hypothetical protein L917_13910 [Phytophthora parasitica] >KUF91034.1 Pre-rRNA-processing protein TSR2 [Phytophthora nicotianae])

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-11
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 0 
Query:   29 FRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVR 137
            F   V     +W  L +A+   WGGGD+ RK  ILLEE L +F          +  K   AD + + +G Y+E +FG + EDGS+EE+S  +  L ++CK+G  + V+
Sbjct:   31 FEYSVKLALARWTALRMAIEGEWGGGDTRRKYEILLEEILNVF----------KYNKTVYADAMSDNIGGYVETEFGLICEDGSVEEISEFLTVLADECKKGQYDRVK 128
[Close]
BLAST of NO28G01480 vs. NCBI_GenBank
Match: ETK79993.1 (hypothetical protein L915_14227 [Phytophthora parasitica] >ETL33415.1 hypothetical protein L916_14126 [Phytophthora parasitica] >ETP09736.1 hypothetical protein F441_14458 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-11
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 0 
Query:   29 FRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVR 137
            F   V     +W  L +A+   WGGGD+ RK  ILLEE L +F          +  K   AD + + +G Y+E +FG + EDGS+EE+S  +  L ++CK+G  + V+
Sbjct:   31 FEYSVKLALARWTALRMAIEGEWGGGDTRRKYEILLEEILNVF----------KYNKTVYADAMSDNIGGYVETEFGLICEDGSVEEISEFLTVLADECKKGQYDRVK 128
[Close]
BLAST of NO28G01480 vs. NCBI_GenBank
Match: XP_008910278.1 (hypothetical protein PPTG_15028 [Phytophthora parasitica INRA-310] >ETM39883.1 hypothetical protein L914_14030 [Phytophthora parasitica] >ETN04351.1 hypothetical protein PPTG_15028 [Phytophthora parasitica INRA-310] >ETO68596.1 hypothetical protein F444_14598 [Phytophthora parasitica P1976] >ETP37840.1 hypothetical protein F442_14421 [Phytophthora parasitica P10297])

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-11
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 0 
Query:   29 FRQGVTSVFRQWMVLHLAVSNNWGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYIEEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVR 137
            F   V     +W  L +A+   WGGGD+ RK  ILLEE L +F          +  K   AD + + +G Y+E +FG + EDGS+EE+S  +  L ++CK+G  + V+
Sbjct:   31 FEYSVKLALARWTALRMAIEGEWGGGDTRRKYEILLEEILNVF----------KYNKTVYADAMSDNIGGYVETEFGLICEDGSVEEISEFLTVLADECKKGQYDRVK 128
The following BLAST results are available for this feature:
BLAST of NO28G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20644.16.700e-5775.71Pre-rRNA-processing protein TSR2 [Nannochloropsis ... [more]
XP_005855069.16.700e-4978.63dt1p1a10l protein [Nannochloropsis gaditana CCMP52... [more]
OQR98388.14.100e-1440.91hypothetical protein THRCLA_06723 [Thraustotheca c... [more]
XP_008615259.15.400e-1440.91hypothetical protein SDRG_11017 [Saprolegnia dicli... [more]
XP_012196186.15.400e-1440.91hypothetical protein SPRG_02247 [Saprolegnia paras... [more]
OQR97029.13.000e-1240.91hypothetical protein ACHHYP_12847 [Achlya hypogyna... [more]
XP_024572423.15.000e-1237.04Uncharacterized conserved protein [Plasmopara hals... [more]
ETI39868.11.500e-1136.11hypothetical protein F443_14592 [Phytophthora para... [more]
ETK79993.11.500e-1136.11hypothetical protein L915_14227 [Phytophthora para... [more]
XP_008910278.11.500e-1136.11hypothetical protein PPTG_15028 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01480.1NO28G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|315431gene_9880Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01480.1NO28G01480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01480 ID=NO28G01480|Name=NO28G01480|organism=Nannochloropsis oceanica|type=gene|length=1326bp
CACTGATAGGAGGAGTCTCAAGTAAGTATCCTTGGACATGCAGCAGCAAC
AACAGCAGCTGCCACAGCAGCACCAACAGCAAGCGCAGCCGCAAGTAAAC
ATGGAGGAGGCATGTGCACTGTTTCGTCAGGGGGTGACATCGGTGTTCAG
GCAGgtgagaagggagggagggatggaaggcggggaggaagggcggaacg
cttgatatggtccgcagatcgcttcgcatatacggcgtgatgtagtaccg
ccaccctacgtcaaaaaaacggtaccttccgcttctcgctttttggtaca
gtgtgtattttgctcctttgcttgcatgacccgacccaaacctccctcct
tccctccctccttcccccccccctccctccctccctcccttagTGGATGG
TCCTTCACCTCGCCGTCTCAAACAACTGGGGCGGGGGAGACAGCTACCGA
AAAGCTACCATCCTCCTCGAGGAGACATTACGCCTCTTTTTACCCTCCGC
CCTCCCTCGCGCTGCGCATCGTCCTAAGAAAATTCCTTCCGCTGATGACC
TGGAGGAGAAGCTGGGAGACTACATAGAAGAGgtagacctttccttcctc
ccttcctccctccctctctccctctctagccccctccctcgcgcctcatc
atttctttatttgtttggtatctgcgagaatcgtctagagaatacctgtt
ccaatctttgcaacctccctccttccctccttccctccatccctcctttt
ctcagCAATTCGGGACACTTATTGAAGACGGTAGTTTGGAAGAAGTGAGT
GCCTTGGTGTGCAGACTCTGGGAAGACTGCAAACAGGGAGGGAAGGAGGG
TGTGAGGGAGGTATGTGGAAAGGAAGCGGAGGTGTTACGGTTGCAGCAGC
GGTGGGGTGAAGTGAGCCGAGAGGCCAGTCGGATGGAAGAGGATCTGATG
AGGAGGGAGGAGGGGGAGGAGGAGTTGAGGGAGGACGAGGATGAGGACGA
GGAGGGAGGATGGGGATCGGCTGTTGGAGGAGGAAGGGGGGGAGGGATGG
ATGTCGATCATGTCCAAGGAGGAGGGGGAGGAGCCGAGGGAGGGAGGGGG
ATGGGGGAGGACGAGGAGGAAGAGGGGGCGCCGGCGTTGGAGGAGGAGGA
CGGATGGACTACGGTCAAGTCAACGAAAAAAACGAACAAGGCACGGAGAG
CACGGCTGCCGCAGCAGCCGACGCTATTTGGTTAGGGGTGAAGAGAAGGA
GCGGCAAGAGGGACAGAAAAGGGAGAGCGGACTTAGGCAGTTAACAGGAA
AGAAAAAAATGACATTTGCATTTTGG
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protein sequence of NO28G01480.1

>NO28G01480.1-protein ID=NO28G01480.1-protein|Name=NO28G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MQQQQQQLPQQHQQQAQPQVNMEEACALFRQGVTSVFRQWMVLHLAVSNN
WGGGDSYRKATILLEETLRLFLPSALPRAAHRPKKIPSADDLEEKLGDYI
EEQFGTLIEDGSLEEVSALVCRLWEDCKQGGKEGVREVCGKEAEVLRLQQ
RWGEVSREASRMEEDLMRREEGEEELREDEDEDEEGGWGSAVGGGRGGGM
DVDHVQGGGGGAEGGRGMGEDEEEEGAPALEEEDGWTTVKSTKKTNKARR
ARLPQQPTLFG*
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Synonyms
Publications