NO28G01220, NO28G01220 (gene) Nannochloropsis oceanica

Overview
NameNO28G01220
Unique NameNO28G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4964
Alignment locationchr28:379910..384873 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:379910..384873 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO28G01220 vs. NCBI_GenBank
Match: EWM20869.1 (hypothetical protein Naga_100787g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 231.1 bits (588), Expect = 1.100e-56
Identity = 128/175 (73.14%), Postives = 135/175 (77.14%), Query Frame = 0 
Query:  114 AFHNAPLATP-----GLPARHRSILPSRANTVAPSVPRPRPRLQRGPAPLQFSPAFLNVGTPEVVLILLVGYFVLGPQDLYRVAKETGQLVNNVQTAGTDAWKVFQEAMEAEGTMAAMGASVNEINNVRQNFFSKFLDVRAERTLDQLEEKGMDVEALTEGMGEEDEWGSRLKEV 284
            AF NAPL +        PARH  I            P    R  R   PL FSPA LNVGTPE  LILLVGYFVLGPQDLYRVAKE GQL++N+QTAG+DAWKVFQEAMEAEGTMAAMGASVNEINNVRQNFF KFLDVRAERTLDQLEEKG+DVEALT GMGEEDEWG+RLKEV
Sbjct:  119 AFLNAPLHSQHVTRLSTPARHGPIXXXXXXXXRRHAPL---RRSRPLPPLFFSPALLNVGTPEAALILLVGYFVLGPQDLYRVAKEVGQLLSNLQTAGSDAWKVFQEAMEAEGTMAAMGASVNEINNVRQNFFQKFLDVRAERTLDQLEEKGVDVEALTGGMGEEDEWGNRLKEV 290
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BLAST of NO28G01220 vs. NCBI_GenBank
Match: GAX29415.1 (hypothetical protein FisN_16Hh145 [Fistulifera solaris])

HSP 1 Score: 71.2 bits (173), Expect = 1.500e-8
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:  165 LNVGTPEVVLILLVGYFVLGPQDLYRVAKETGQLVNNVQTAGTDAWKVFQEAMEAEGTMAAMGASVNEINN 236
            L +GTPE+  ILLVGYFVLGP DLY++ KE G+ + NV+T  TD    F+  ME++  +  +  +  E+N+
Sbjct:    8 LGIGTPELATILLVGYFVLGPSDLYKIVKEVGKFIQNVRTFSTDLTTTFESNMESQLQLQDIRKAQQELND 78
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BLAST of NO28G01220 vs. NCBI_GenBank
Match: GAX26307.1 (hypothetical protein FisN_16Lh145 [Fistulifera solaris])

HSP 1 Score: 71.2 bits (173), Expect = 1.500e-8
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:  165 LNVGTPEVVLILLVGYFVLGPQDLYRVAKETGQLVNNVQTAGTDAWKVFQEAMEAEGTMAAMGASVNEINN 236
            L +GTPE+  ILLVGYFVLGP DLY++ KE G+ + NV+T  TD    F+  ME++  +  +  +  E+N+
Sbjct:    8 LGIGTPELATILLVGYFVLGPSDLYKIVKEVGKFIQNVRTFSTDLTTTFESNMESQLQLQDIRKAQQELND 78
[Close]
BLAST of NO28G01220 vs. NCBI_GenBank
Match: EJK47508.1 (hypothetical protein THAOC_33764 [Thalassiosira oceanica])

HSP 1 Score: 70.1 bits (170), Expect = 3.300e-8
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:  165 LNVGTPEVVLILLVGYFVLGPQDLYRVAKETGQLVNNVQTAGTDAWKVFQEAMEAEGTMAAMGASVNEINN 236
            L VG PEV + LLVGYFVLGP DLY++ KE G+ V N +T GT+A K F+  ME +  +  +  +  E+N+
Sbjct:   85 LGVGAPEVAVTLLVGYFVLGPSDLYKLVKEIGKFVQNFRTLGTEAAKSFEGTMENQLEIEGLRKAQAELND 155
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BLAST of NO28G01220 vs. NCBI_GenBank
Match: OEU18500.1 (hypothetical protein FRACYDRAFT_260421 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.2 bits (165), Expect = 1.200e-7
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 0 
Query:  165 LNVGTPEVVLILLVGYFVLGPQDLYRVAKETGQLVNNVQTAGTDAWKVFQEAMEAEGTMAAMGASVNEINNVRQNFFSKFLDVRAERTLDQLEEKGMDVEALTEGMGEEDE 276
            L +GTPE+  ILLVGYFVLGP DL+++ KE G+ V NVQ+  T+A    + +ME +  +  +  +  E+N+     FS    +  +R     E +    + L+  +G+E E
Sbjct:   96 LGIGTPEIFTILLVGYFVLGPSDLFKLTKEVGKFVQNVQSFATEATNTLETSMEDQLQLEEIRKAQRELNDA----FSFRRTINVDR-----ESEAFSTDVLSPRVGQEYE 197
The following BLAST results are available for this feature:
BLAST of NO28G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM20869.11.100e-5673.14hypothetical protein Naga_100787g1, partial [Nanno... [more]
GAX29415.11.500e-845.07hypothetical protein FisN_16Hh145 [Fistulifera sol... [more]
GAX26307.11.500e-845.07hypothetical protein FisN_16Lh145 [Fistulifera sol... [more]
EJK47508.13.300e-847.89hypothetical protein THAOC_33764 [Thalassiosira oc... [more]
OEU18500.11.200e-735.14hypothetical protein FRACYDRAFT_260421 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004932NSK004932Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01220.1NO28G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|314219gene_9851Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100700g4gene9545Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01220.1NO28G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01220 ID=NO28G01220|Name=NO28G01220|organism=Nannochloropsis oceanica|type=gene|length=4964bp
GGATTGGATACCTCCTATGATATTCAGCGCCGGCCCCTGTCCGCACGCGG
ATCCATGAAGATTAGAAGTGGTCCCGTTTTAGATGCTGCTGGCTTGAGCG
AGGGATTGGGCTTTGGCTTGAGCTGCGGCCTGGGCTGTCCACTTTGGTGT
GTGAAGCGGCCCCGAGCAAGACGATGGAACCAAGCTCGATGTGGTGGAAT
AAAATCACGAAGTTCGAAACATTTTGGTCACTTTTTGAAATGGAAATGGC
ATGAGAGAGTATCGCTTACCCTCCGTTGTCCCAATGTACCGCATCCCTCT
GCCAATCTAATGAAAGCTGCGGAGGCGACGAAAGTATGAAGAAACCCGAC
ATTCCCTCCTATATATCGTCATGGCATGCCCGGCAGTAGATCCTCATCTT
CACACATGCGAGCTTAAAGGAAAAAAACAGAAACGTGCAAACGACGGTGA
AAAGGAACGAAATGACGAGAATAAAGCGATGGAACGGGGAACTTGAAACA
AAGTACGTTTTGAATACGTTTTCGTTTCGGGTTGTAAATGTAAGACTAAG
ACATTTTCAAAGTACGACCGATACTCCATTCCCCGAGTCCAATTTATTGC
CTCCTTCAAGCTTGCTGATGAAAGCGCCAGGAAAGAGGGAAGTCTGTGCC
TCGTCACGTCCTATCTCCTGTAGTGGGTCCGGAGAGAAGATAATGAATCA
TAAGTCCTTTTATTTTTCAGTGATATCGCATGAGTCTCATCCGCTGGCTT
TTTACCCCATCTCTCCCTCCCTCGACATTCCTTTCCTTCCTCTACTCCTC
CATCTCTTTCTTTCTACGTAAACACAAGTAAGAACGCCGTGGCGTGCGTC
TGAGAGACAAAATATATCTGTACACACGTATGTAATAAATTATACATTAA
ATATATATATATATATATATACATCATATATATACATCAGCAGTGTGCAT
CATAGTTTAATTAAAAAGAGTCCCCACAGAGTAAGCTACTCGGATGGTTG
ATTCATAAATGTTCTAATCCTCTGCAATGCTTGTGGTAGTTGTGGCGCTG
CTGCTGGCGGTGCTAGTACTGGTGTTGATAGCGGCAAGATAAATTTATTC
ACGGCACACATACCACGCATGGACGTACCTTCAGAGCCGGGGGTTTGGAT
GACATGTTGCCAGCCGTCTGTCTCTTGATGCTGCACACCCATCCACTGCT
GCTTCCTGCCACGAGCTGGCTGCTCTGTCGTAGCATGCTGCCACCGTTGG
AAAAAAGGTGGTGATGGTTGATGTGCCCGTAGCCGTCTTCGTCGGGAAAG
AGATCGCGTGGCTAAGCAGGACTGGGGTCTCCCTACCCCACGTTTTTCGT
CTTGGCTTGCCTTGGTCCTATCGCACGCACATCACCCGATTTGAAGGCCA
CGAATCCCATTATGTCATCGTCCAGCTCCACTGCTTGTATTCATGGTGCT
ATCATCGTCTTTGGCGGCTCGTGGTCGTTTTTCAAGGCGTTCTTTTATAG
ATCGTGCACTGGAGCACCAATGCATGCAAAGCTGATGATATCCTCGCGAT
TTCGTGATGACTTTCGCCCTGCAGGTGTACAGCAACTTCCCTTTGCCATG
TCTTGTCCGCACGCAAACTCACAGCTACCTCACACGACTCCTCCAAGTCT
TGCACAGCCTAAGTTTCGACTACAAGGCGGAAGCTCGTGCGTGCTGACGC
GGTGGAGACGCTCGGGATCCTGACCTGAAGCTCGGCCGATTCAGCCATTC
CACCATTCAATCGATCGATCGTGCCTCACCTAGCCCTGTGCGCTGGCTGC
TAGGATATGACCAACACTTGCACCAGCATGAGCATGCCTCCCTCTTCATT
TTCCTGTCCTCCTTCCTCTTATGCTTCGTCATCGGGCAGAAAAAGAAGAC
TCCTCCTCTCGGCGCTATCATTTCGACAGTCACTGTCTGTAGCACCAGGA
GGAGGAGGGGGAGGAGGAGGAGGAGGACGAGGTATTGAAGCAGCGTCTGC
TGCAGCAACAGCAGCAACAGCAACAACACATAAAGCGGCAGCAAGAAAGC
GTCGTGATGCACCCCTCCTCCTGTCCACCTTCCCCCTCCTCCTTGCCCTC
CTCCTCCTCCCTACCTTCCTCCCTCCAAGCACCATCAGTGTCCTCGCCTT
TCATAATGCTCCGCTCGCCACGCCGGGTTTACCTGCACGgtaagcccctc
cctctttttctacccccctctactcctgtctccaggcccccttttcttct
ctgttaatttcttcctcctgccaacgttgtgcacatactctctattccct
ttctccctccctacccccttccctccctccccccctcgctttctttccag
ccgccactggtatagcaccctctatctcaacccgcagcaggttcctctac
ttctctttcctccactctcccatttccctcgtattcatcttacagcctct
gtagctcactcatgatactcttgatgttggcatccagaaacggtgtttat
tttttaatttgtcgtcggttaattcctactcttcctcccctcctcccctc
tttcctccagACACCGATCCATCCTCCCCTCCAGAGCCAACACGGTCGCC
CCTTCTGTTCCTCGCCCTCGACCTCGCTTGCAACGAGGACCTGCCCCTCT
CCAGTTTAGCCCTGCTTTTCTGAATGTAGGCACGCCGGAGGTAGTTTTGA
TTTTATTGGTCGGATACTTTGTGCTAGGGCCTCAGGATTTATACAGGGTG
GCTAAGGAGACCGGTCAGCTGGTGAATAATGTGCAGACTGCAGGCACCGA
TGCTTGGAAGgtaggggtcgattaaaatactattatgtgtgtatgtatga
atgtattgacctttatctatatgtgttaatttgttccatgatatttacaa
ttgacagGTTTTTCAAGAGGCGATGGAAGCGGAGGGAACGATGGCCGCCA
TGGGCGCAAGCGTCAACGAGATCAACAATgtaaggaaaagatgttttaaa
ttaaaataaataaataaattaaaagtaaggaaaatcgtaaaatagataat
aaataattatttttggatttatacattttgacgaggaaggacagaaaaag
atgaaagcaaagacgtgtactaaaaggttggttggagaagatatcacccg
caaataaacagaactataaataaattttatttattcatgataacattatt
aaattatgaataaattttcaaaaattgattttgtctatattaatctatga
aaattgatagttattaacaagccaaatccccctcacacactcatgacagG
TACGGCAAAACTTTTTCTCTAAGTTCCTGGATGTGCGGGCCGAGCGCACT
CTTGATCAGCTCGAGGAGAAAGGGATGGACGTGGAGGCCCTGACGGAAGG
GATGGGGGAGGAAGATGAGTGGGGAAGCAGGCTCAAGGAAGTACGAAGGA
GGAAGGAGGAAGAGAGGGAGGAAGAGGAGCAAAGGGCAGCGATGGAAAAA
GACGATAAGAGGAGGAGGAGGAAGAGGAGGAGGAGCCGGACAGAAGGAGG
GAGGAGGTTGCAGGGGTGGGAGAGCGACGAGGAGGAGGACCGATACCTGG
TCAGTAGGGAGGGCGGGATGAATGAGAGAATGGGGAGTCGCCGTCGTTCT
CCTCCTTCTCCGAGTCGTCGTCGACGACTTCCTCCTCCGCCTCCTTCCCC
CTACGGGGGGCCCCCTTTTCCTTTTCCTTATCCCAGCCCCGCACAATCAA
GAGCAAGGGGCTACCCTCCCCCTCCTTATCCTTATCATTACGCTTACCCT
CCTACTCCTCCTGCTGCTGCTACTACTAGTACTGATGGCAGTACTGCTGA
AAGAGCGGTGAATACTACTGCAACCATAGGCACCCGTTTTCCTCCTTCTT
TCTTCCCCCCTCCTCCTCCTCCATTTTACTACGCACCACCAGCACCACCA
GCAACAGTAGCACAATCAGGAACAGCAGGAATAGCTGCAAATAAGTCAGC
AACTGAGGAGAGCAGCAGCCCCAGCACCACCACCACCAGCGCCCCTCCTC
CTCAACGAGGCTGGTATCCTTCCCCTCCTCCCTACATGTATCGCCCTCCT
CCCTACTTCACCCCCACTCCCCCTCCTGCGTCTTCCTCTTCCTCCCCTTC
CTTTCCTTATTCCTCGTCCTCTTCTCCCTCTTCTTCGTCATGGCCATACC
CGGCCCAGCCGCCTTCCCCGTATGCATCTCTCTCGACGAAGGGAGGAGTA
GAAAAGGGCGAGGCCAGCGAAGATGCAAAAACAGCTCCTGCCGCAGCGAT
CTCATCAGTGGCAGCAGGAGCAGGAGTAGGAAAAGCAGCCTACCCCCCCT
ACATGATGATGCCTCCTTCACCCTATGGCATGTATCCTCCGCCTTTTTCT
CCCTACTCCCCATACCCCCCCTACCCTCCTTACCCTTCTCGCCCTTCCTC
TTCTTCTCGTCGGCGTTCTTCTTCATCGTCGTCCGGGCGGCGTCCACGCA
GAAGCAGCAGGATTAGGAGCAGTAGTGGCTCAGACAGAGATAAAAAGAGT
AAGAGTAGCAATATCAACTCTTCCTCCCTCCCTCCCTTGCCCCTGACACC
TCAAGAGGAGGCGGAAGCCGCAAGGAGATTTTCAGATCAATTGAATATCG
ACGCATGGAATGAGAAAATTATGAAAGCTAAGGGAAATGGAGCGAACATG
CCTTTAGCGCCATTGGAAGACCAGGGGGGCAAGGAAAGAAGTAAAACGAG
TCGATGGAGGGAAGAGACGCGGCGTGGGAGGAGGGGATGACTTAAAGAAA
TCCACGAATTTGAAAAACGCGTTAACAATGGGTAGATACGGAGAGGCAGA
TGCCCACGCACAACTTAGAGATTTCTTCAACTTTCCTTGCTCACCGTCTT
TGAAATGAAGTCACTAGAGGGCGAAAACACGAGAAAGAACGTCCAAGGAA
GAGAAGCAAGATAG
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protein sequence of NO28G01220.1

>NO28G01220.1-protein ID=NO28G01220.1-protein|Name=NO28G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=732bp
MTNTCTSMSMPPSSFSCPPSSYASSSGRKRRLLLSALSFRQSLSVAPGGG
GGGGGGGRGIEAASAAATAATATTHKAAARKRRDAPLLLSTFPLLLALLL
LPTFLPPSTISVLAFHNAPLATPGLPARHRSILPSRANTVAPSVPRPRPR
LQRGPAPLQFSPAFLNVGTPEVVLILLVGYFVLGPQDLYRVAKETGQLVN
NVQTAGTDAWKVFQEAMEAEGTMAAMGASVNEINNVRQNFFSKFLDVRAE
RTLDQLEEKGMDVEALTEGMGEEDEWGSRLKEVRRRKEEEREEEEQRAAM
EKDDKRRRRKRRRSRTEGGRRLQGWESDEEEDRYLVSREGGMNERMGSRR
RSPPSPSRRRRLPPPPPSPYGGPPFPFPYPSPAQSRARGYPPPPYPYHYA
YPPTPPAAATTSTDGSTAERAVNTTATIGTRFPPSFFPPPPPPFYYAPPA
PPATVAQSGTAGIAANKSATEESSSPSTTTTSAPPPQRGWYPSPPPYMYR
PPPYFTPTPPPASSSSSPSFPYSSSSSPSSSSWPYPAQPPSPYASLSTKG
GVEKGEASEDAKTAPAAAISSVAAGAGVGKAAYPPYMMMPPSPYGMYPPP
FSPYSPYPPYPPYPSRPSSSSRRRSSSSSSGRRPRRSSRIRSSSGSDRDK
KSKSSNINSSSLPPLPLTPQEEAEAARRFSDQLNIDAWNEKIMKAKGNGA
NMPLAPLEDQGGKERSKTSRWREETRRGRRG*
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Synonyms
Publications