NO28G01110, NO28G01110 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G01110 vs. NCBI_GenBank
Match: EWM20887.1 (Ovarian tumor, otubain [Nannochloropsis gaditana]) HSP 1 Score: 395.6 bits (1015), Expect = 2.500e-106 Identity = 227/442 (51.36%), Postives = 275/442 (62.22%), Query Frame = 0 Query: 96 VRRCVSPFGIIPAEDTKGKEADDSEGEIKKMPRKMMVGSELHWQQHQLQPEGDEGRLTLTSSMSFRPLEEDPQWGLFLPFDSLEFSFVGGAIGVCRPVPDEFSTIYISTLTMVKPTIQRVTGLGSIFLGTKKKEVMLWGQPLKPFTXXXXXXXXXXXXXXXXXXXXXLRLADQMLRLALVGNPQCYSFWYLQYFNSKDVSQLLGR-----KEEGREGAMAGTGGEDNCRQSPAKREEGPVVDSSPAGEEGKIKMEVDVQNTEGKXXXXXXXXXXXXXXXXISKIESMTGTRILVAPYEGGKGLRRCFLLMGEEELVAKARNHLQGAITQKISPTGREVAALLAGQEGGNGGGEIDERLEEIRKELRDKHRLRMMEVQRDGNCLFRALSVFEHKTETKHRAVRAAIVARLKEAPEAMEVTALVEGITSEEYLRRMAEDRQWGG 533 +RRC SPFG+IP E+++ + + G + ++ +LQP D +L SSMS+ PL EDP+W LF FDSL+FSFVGGAIGVCRPVP EFS IY +TLTM+KPTI R+TGLGS+FLG K++EVMLW P+ P LRLADQMLRLALVG P+ YS+WYLQYF + DV +LLGR +EE EG G E+N ++KIE MTGTRILVAP++ G G+RRCFLLMGEEELV +A LQGA+ QKI P+ +E A +LA G GG DERLEEIR ELRDKH+LRMMEVQRDGNCLFRALS FEH TE++H+ VRA IVARL+EAPEAM VTALVEG++ EEY++ MA+DRQWGG Sbjct: 1 MRRCASPFGMIPPEESECNDVGEGHG--------------IEAREAELQPAVD----SLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISP------TAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENN---------------------------------------------------VILAKIEEMTGTRILVAPHD-GMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGG 366
BLAST of NO28G01110 vs. NCBI_GenBank
Match: EWM20888.1 (Ovarian tumor, otubain [Nannochloropsis gaditana]) HSP 1 Score: 297.4 bits (760), Expect = 9.400e-77 Identity = 179/380 (47.11%), Postives = 218/380 (57.37%), Query Frame = 0 Query: 96 VRRCVSPFGIIPAEDTKGKEADDSEGEIKKMPRKMMVGSELHWQQHQLQPEGDEGRLTLTSSMSFRPLEEDPQWGLFLPFDSLEFSFVGGAIGVCRPVPDEFSTIYISTLTMVKPTIQRVTGLGSIFLGTKKKEVMLWGQPLKPFTXXXXXXXXXXXXXXXXXXXXXLRLADQMLRLALVGNPQCYSFWYLQYFNSKDVSQLLGR-----KEEGREGAMAGTGGEDNCRQSPAKREEGPVVDSSPAGEEGKIKMEVDVQNTEGKXXXXXXXXXXXXXXXXISKIESMTGTRILVAPYEGGKGLRRCFLLMGEEELVAKARNHLQGAITQKISPTGREVAALLAGQEGGNGGGEIDERLEEIRKELRDKHRLRMMEVQRDG 471 +RRC SPFG+IP E+++ + + G + ++ +LQP D +L SSMS+ PL EDP+W LF FDSL+FSFVGGAIGVCRPVP EFS IY +TLTM+KPTI R+TGLGS+FLG K++EVMLW P+ P LRLADQMLRLALVG P+ YS+WYLQYF + DV +LLGR +EE EG G E+N ++KIE MTGTRILVAP++ G G+RRCFLLMGEEELV +A LQGA+ QKI P+ +E A +LA G GG DERLEEIR ELRDKH+LRMMEVQ G Sbjct: 1 MRRCASPFGMIPPEESECNDVGEGHG--------------IEAREAELQPAVD----SLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISP------TAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENN---------------------------------------------------VILAKIEEMTGTRILVAPHD-GMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQVSG 304
BLAST of NO28G01110 vs. NCBI_GenBank
Match: XP_005855122.1 (cre-duo-3 protein [Nannochloropsis gaditana CCMP526] >EKU21241.1 cre-duo-3 protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 159.8 bits (403), Expect = 2.300e-35 Identity = 82/118 (69.49%), Postives = 96/118 (81.36%), Query Frame = 0 Query: 415 GAITQKISPTGREVAALLAGQEGGNGGGEIDERLEEIRKELRDKHRLRMMEVQRDGNCLFRALSVFEHKTETKHRAVRAAIVARLKEAPEAMEVTALVEGITSEEYLRRMAEDRQWGG 533 GA+ QKI P+ +E A +LA G GG DERLEEIR ELRDKH+LRMMEVQRDGNCLFRALS FEH TE++H+ VRA IVARL+E PEAM VTALVEG++ EEY++ MA+DRQWGG Sbjct: 3 GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEVPEAMAVTALVEGVSEEEYVKGMAQDRQWGG 120 The following BLAST results are available for this feature:
BLAST of NO28G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G01110 ID=NO28G01110|Name=NO28G01110|organism=Nannochloropsis oceanica|type=gene|length=1998bpback to top protein sequence of NO28G01110.1 >NO28G01110.1-protein ID=NO28G01110.1-protein|Name=NO28G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bpback to top Synonyms
Publications
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