NO28G01110, NO28G01110 (gene) Nannochloropsis oceanica

Overview
NameNO28G01110
Unique NameNO28G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1998
Alignment locationchr28:348014..350011 +

Link to JBrowse

Properties
Property NameValue
DescriptionOvarian tumor, otubain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:348014..350011 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Homology
BLAST of NO28G01110 vs. NCBI_GenBank
Match: EWM20887.1 (Ovarian tumor, otubain [Nannochloropsis gaditana])

HSP 1 Score: 395.6 bits (1015), Expect = 2.500e-106
Identity = 227/442 (51.36%), Postives = 275/442 (62.22%), Query Frame = 0
Query:   96 VRRCVSPFGIIPAEDTKGKEADDSEGEIKKMPRKMMVGSELHWQQHQLQPEGDEGRLTLTSSMSFRPLEEDPQWGLFLPFDSLEFSFVGGAIGVCRPVPDEFSTIYISTLTMVKPTIQRVTGLGSIFLGTKKKEVMLWGQPLKPFTXXXXXXXXXXXXXXXXXXXXXLRLADQMLRLALVGNPQCYSFWYLQYFNSKDVSQLLGR-----KEEGREGAMAGTGGEDNCRQSPAKREEGPVVDSSPAGEEGKIKMEVDVQNTEGKXXXXXXXXXXXXXXXXISKIESMTGTRILVAPYEGGKGLRRCFLLMGEEELVAKARNHLQGAITQKISPTGREVAALLAGQEGGNGGGEIDERLEEIRKELRDKHRLRMMEVQRDGNCLFRALSVFEHKTETKHRAVRAAIVARLKEAPEAMEVTALVEGITSEEYLRRMAEDRQWGG 533
            +RRC SPFG+IP E+++  +  +  G              +  ++ +LQP  D    +L SSMS+ PL EDP+W LF  FDSL+FSFVGGAIGVCRPVP EFS IY +TLTM+KPTI R+TGLGS+FLG K++EVMLW  P+ P                       LRLADQMLRLALVG P+ YS+WYLQYF + DV +LLGR     +EE  EG   G   E+N                                                     ++KIE MTGTRILVAP++ G G+RRCFLLMGEEELV +A   LQGA+ QKI P+ +E A +LA   G  GG   DERLEEIR ELRDKH+LRMMEVQRDGNCLFRALS FEH TE++H+ VRA IVARL+EAPEAM VTALVEG++ EEY++ MA+DRQWGG
Sbjct:    1 MRRCASPFGMIPPEESECNDVGEGHG--------------IEAREAELQPAVD----SLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISP------TAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENN---------------------------------------------------VILAKIEEMTGTRILVAPHD-GMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEAPEAMAVTALVEGVSEEEYVKGMAQDRQWGG 366          
BLAST of NO28G01110 vs. NCBI_GenBank
Match: EWM20888.1 (Ovarian tumor, otubain [Nannochloropsis gaditana])

HSP 1 Score: 297.4 bits (760), Expect = 9.400e-77
Identity = 179/380 (47.11%), Postives = 218/380 (57.37%), Query Frame = 0
Query:   96 VRRCVSPFGIIPAEDTKGKEADDSEGEIKKMPRKMMVGSELHWQQHQLQPEGDEGRLTLTSSMSFRPLEEDPQWGLFLPFDSLEFSFVGGAIGVCRPVPDEFSTIYISTLTMVKPTIQRVTGLGSIFLGTKKKEVMLWGQPLKPFTXXXXXXXXXXXXXXXXXXXXXLRLADQMLRLALVGNPQCYSFWYLQYFNSKDVSQLLGR-----KEEGREGAMAGTGGEDNCRQSPAKREEGPVVDSSPAGEEGKIKMEVDVQNTEGKXXXXXXXXXXXXXXXXISKIESMTGTRILVAPYEGGKGLRRCFLLMGEEELVAKARNHLQGAITQKISPTGREVAALLAGQEGGNGGGEIDERLEEIRKELRDKHRLRMMEVQRDG 471
            +RRC SPFG+IP E+++  +  +  G              +  ++ +LQP  D    +L SSMS+ PL EDP+W LF  FDSL+FSFVGGAIGVCRPVP EFS IY +TLTM+KPTI R+TGLGS+FLG K++EVMLW  P+ P                       LRLADQMLRLALVG P+ YS+WYLQYF + DV +LLGR     +EE  EG   G   E+N                                                     ++KIE MTGTRILVAP++ G G+RRCFLLMGEEELV +A   LQGA+ QKI P+ +E A +LA   G  GG   DERLEEIR ELRDKH+LRMMEVQ  G
Sbjct:    1 MRRCASPFGMIPPEESECNDVGEGHG--------------IEAREAELQPAVD----SLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISP------TAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENN---------------------------------------------------VILAKIEEMTGTRILVAPHD-GMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQVSG 304          
BLAST of NO28G01110 vs. NCBI_GenBank
Match: XP_005855122.1 (cre-duo-3 protein [Nannochloropsis gaditana CCMP526] >EKU21241.1 cre-duo-3 protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.8 bits (403), Expect = 2.300e-35
Identity = 82/118 (69.49%), Postives = 96/118 (81.36%), Query Frame = 0
Query:  415 GAITQKISPTGREVAALLAGQEGGNGGGEIDERLEEIRKELRDKHRLRMMEVQRDGNCLFRALSVFEHKTETKHRAVRAAIVARLKEAPEAMEVTALVEGITSEEYLRRMAEDRQWGG 533
            GA+ QKI P+ +E A +LA   G  GG   DERLEEIR ELRDKH+LRMMEVQRDGNCLFRALS FEH TE++H+ VRA IVARL+E PEAM VTALVEG++ EEY++ MA+DRQWGG
Sbjct:    3 GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDGNCLFRALSAFEHGTESQHKQVRAMIVARLEEVPEAMAVTALVEGVSEEEYVKGMAQDRQWGG 120          
The following BLAST results are available for this feature:
BLAST of NO28G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM20887.12.500e-10651.36Ovarian tumor, otubain [Nannochloropsis gaditana][more]
EWM20888.19.400e-7747.11Ovarian tumor, otubain [Nannochloropsis gaditana][more]
XP_005855122.12.300e-3569.49cre-duo-3 protein [Nannochloropsis gaditana CCMP52... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004916NSK004916Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01110.1NO28G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609287gene_9842Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100201g11gene9533Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01110.1NO28G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01110 ID=NO28G01110|Name=NO28G01110|organism=Nannochloropsis oceanica|type=gene|length=1998bp
ATGCCAGACGCTCCTCTTCTCTCGCGGGACCGGACGGGCTTATCCTATGA
AGAAGTTCTCGCCCTCTCCCCAGGCGGCCAACAAAACCCAGCCCCGAACA
GCCCACGCAACGACCAGCGTGCAGGGACGGCCATGCTCAAATCCCCTCCA
ACCTCTCCGCGCAGTATCATGTCCAACTTTAGTCGTGGGAAGAATAAAAG
CCCCCAGGGTAACACTTCTCCTCGTAGTCTTCCGTCAAGTCCTCCAAGGA
GCCCGGGTAGTCCCAAAGGCTTTTTCGCCGCTGCGGTGCGTCGGTGTGTC
TCCCCTTTCGGGATCATACCCGCCGAAGACACGAAAGGAAAGGAAGCCGA
CGACAGTGAAGGTGAAATAAAGAAGATGCCAAGAAAAATGATGGTGGGTA
GTGAATTGCATTGGCAACAGCATCAGCTACAGCCAGAGGGGGATGAGGGC
CGTTTGACATTGACAAGTTCGATGTCTTTCCGACCTTTGGAGGAAGATCC
CCAATGGGGATTGTTTTTGCCCTTTGACAGCTTGGAGTTCTCGTTTGTGG
GCGGCGCAATCGGAGTGTGCCGGCCAGTTCCTGACGAGgtaatagaggag
gagctggaagattggggggagaaatatggaagtaaaactttcacgttgtg
tactgagtcgccgccttccctcccttccccttccacagTTCTCCACGATC
TACATATCCACTCTCACAATGGTGAAGCCAACAATCCAACGCGTGACCGG
CCTAGGCTCCATCTTCCTCGGCACCAAAAAGAAGGAGGTCATGCTATGGG
GGCAACCCCTCAAGCCTTTCACCTCCTCCTCTATCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTGAACCCCCCGCAGATGACCTTCGTCTCGCCGA
CCAAATGCTCCGCTTGGCTCTCGTAGGCAATCCTCAGTGTTATTCATTCT
GGTACCTCCAGTATTTCAATAGCAAAGACGTGAGCCAACTGCTTGGGAGG
AAGGAGGAAGGGAGGGAGGGGGCGATGGCAGGGACGGGTGGAGAGGATAA
TTGTCGGCAAAGCCCAGCTAAAAGGGAGGAAGGACCAGTAGTAGACTCCA
GTCCTGCTGGAGAGGAGGGAAAGATCAAAATGGAGGTGGACGTCCAGAAC
ACCGAAGGCAAGGAGGAGGAAGGGATGGAGGAAGAGAGTGTTATAGAAAA
CGATATTATCATCTCAAAAATTGAGTCGATGACAGGGACGCGTATCTTGG
TTGCTCCCTATGAAGGAGGGAAAGGCCTTAGAAGGTGTTTTTTGCTGATG
GGAGAAGAAGAATTAGTCGCAAAAGCCCGCAATCATCTGCAAGGGGCCAT
AACGCAGAAGATCTCGCCAACCGGCCGGGAGGTTGCGGCCTTGCTTGCGG
GGCAGGAAGGGGGCAATGGAGGGGGGGAAATCGATGAGAGGCTGGAAGAA
ATTCGGAAGGAGTTGCGGGATAAGCATCGGTTGAGGATGATGGAGGTGCA
Ggtgagtgaggagaaagagggctgggagggcggaaatggcgaggaggagg
gaaatctttccccttcgaatgcaacctgccaagctaacttgtgctgtctg
caagctcatgtcttctatcctctgcgtacgataatctttcacaatgtgtg
acagcaactctcgtttttgaattttaggaatcttttaacacacgaccaaa
acgaagcactggcacgctcactcaattttcccgaatccattcttccctac
cttcatagCGTGACGGGAACTGTCTCTTCCGTGCTCTTTCTGTCTTTGAG
CACAAGACAGAAACGAAGCATCGGGCGGTGCGTGCTGCCATCGTGGCCCG
CTTAAAAGAAGCGCCCGAAGCAATGGAAGTTACTGCATTGGTGGAAGGGA
TAACTAGCGAGGAATATTTGAGGAGGATGGCGGAAGATAGGCAATGGGGG
GGTATACCGAGTGCATGGCTTGGAGTGAGGCTAGAAAGAAGCACGTGA
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protein sequence of NO28G01110.1

>NO28G01110.1-protein ID=NO28G01110.1-protein|Name=NO28G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MPDAPLLSRDRTGLSYEEVLALSPGGQQNPAPNSPRNDQRAGTAMLKSPP
TSPRSIMSNFSRGKNKSPQGNTSPRSLPSSPPRSPGSPKGFFAAAVRRCV
SPFGIIPAEDTKGKEADDSEGEIKKMPRKMMVGSELHWQQHQLQPEGDEG
RLTLTSSMSFRPLEEDPQWGLFLPFDSLEFSFVGGAIGVCRPVPDEFSTI
YISTLTMVKPTIQRVTGLGSIFLGTKKKEVMLWGQPLKPFTSSSISSSSS
SSSSSSEPPADDLRLADQMLRLALVGNPQCYSFWYLQYFNSKDVSQLLGR
KEEGREGAMAGTGGEDNCRQSPAKREEGPVVDSSPAGEEGKIKMEVDVQN
TEGKEEEGMEEESVIENDIIISKIESMTGTRILVAPYEGGKGLRRCFLLM
GEEELVAKARNHLQGAITQKISPTGREVAALLAGQEGGNGGGEIDERLEE
IRKELRDKHRLRMMEVQRDGNCLFRALSVFEHKTETKHRAVRAAIVARLK
EAPEAMEVTALVEGITSEEYLRRMAEDRQWGGIPSAWLGVRLERST*
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Synonyms
Publications