NO28G01090, NO28G01090 (gene) Nannochloropsis oceanica

Overview
NameNO28G01090
Unique NameNO28G01090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1258
Alignment locationchr28:343393..344650 -

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Properties
Property NameValue
DescriptionTetratricopeptide TPR-1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:343393..344650 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
Homology
[Close]
BLAST of NO28G01090 vs. NCBI_GenBank
Match: XP_005855119.1 (hypothetical protein NGA_0094500 [Nannochloropsis gaditana CCMP526] >EKU21238.1 hypothetical protein NGA_0094500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 305.1 bits (780), Expect = 3.000e-79
Identity = 196/292 (67.12%), Postives = 213/292 (72.95%), Query Frame = 0 
Query:   73 EFGVEDLPGQLEGLRVLEPEERSATKAKTMKEKGNTCYAAENYEGALECYGLAIKLCPYQYDKEREMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTVVEEVDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVEHKEECAVYYGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 365
            + G EDL  Q E LRV+  EER A KA+ +KEKGNTCY A++++GA ECYGLAIK CPYQYDKE+E+A           XXXXX                  E +      XXXXXXXXXXXXXXXXXXXXXXXXXXX              F E KEECAVYY NRAACWVH+GRD+E V+DC VALKLK GY KALMRRAQA ERLDKLEDAL DYK VLA+DP NRV R K+PGLEKECA RMEKLK ET+GKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK
Sbjct:   64 DIGAEDLSEQFEELRVVPEEERDAEKARGLKEKGNTCYQAQDFQGAAECYGLAIKFCPYQYDKEKELAEARRRAWAAQEXXXXXRKSG--------------EENVATPETXXXXXXXXXXXXXXXXXXXXXXXXXXXHQADATRAEEEKEPFAEFKEECAVYYCNRAACWVHLGRDREVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341
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BLAST of NO28G01090 vs. NCBI_GenBank
Match: EWM20893.1 (Tetratricopeptide TPR-1 [Nannochloropsis gaditana])

HSP 1 Score: 305.1 bits (780), Expect = 3.000e-79
Identity = 196/292 (67.12%), Postives = 213/292 (72.95%), Query Frame = 0 
Query:   73 EFGVEDLPGQLEGLRVLEPEERSATKAKTMKEKGNTCYAAENYEGALECYGLAIKLCPYQYDKEREMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTVVEEVDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVEHKEECAVYYGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 365
            + G EDL  Q E LRV+  EER A KA+ +KE+GNTCY A++++GA ECYGLAIK CPYQYDKE+E+A           XXXXX                  E +      XXXXXXXXXXXXXXXXXXXXXXXXXXX              F E KEECAVYY NRAACWVH+GRDQE V+DC VALKLK GY KALMRRAQA ERLDKLEDAL DYK VLA+DP NRV R K+PGLEKECA RMEKLK ET+GKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK
Sbjct:   64 DIGAEDLSEQFEELRVVPEEERDAEKARGLKEEGNTCYQAQDFQGAAECYGLAIKFCPYQYDKEKELAEARRRAWAAQEXXXXXRKSG--------------EENVATPETXXXXXXXXXXXXXXXXXXXXXXXXXXXHQADATRAEEEKEPFAEFKEECAVYYCNRAACWVHLGRDQEVVEDCSVALKLKSGYAKALMRRAQASERLDKLEDALKDYKEVLALDPGNRVVRAKMPGLEKECAARMEKLKTETIGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 341
[Close]
BLAST of NO28G01090 vs. NCBI_GenBank
Match: CCA23670.1 (Mitochondrial Protein Translocase (MPT) Family puta [Albugo laibachii Nc14] >CCA25331.1 Mitochondrial Protein Translocase (MPT) Family puta [Albugo laibachii Nc14])

HSP 1 Score: 150.2 bits (378), Expect = 1.200e-32
Identity = 73/136 (53.68%), Postives = 94/136 (69.12%), Query Frame = 0 
Query:  227 EHKEECAVYYGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSF 363
            EH  E A+Y+ NRAAC   + R +E +DDC  A+ L P Y+KAL+RRA+A+E+LDKLE+AL DY  VL ID ++  AR     L+K    R EK+K E + KLK  GN++L  FGLS DNFKM QDPNTGSY+ +F
Sbjct:  119 EHSNEKAIYFSNRAACLARLNRVEETIDDCTQAIALSPKYIKALLRRAEAYEKLDKLEEALRDYDEVLKIDASHSTARSSHTRLKKIVDERAEKMKAEMMEKLKGFGNTLLGKFGLSTDNFKMVQDPNTGSYNINF 254
[Close]
BLAST of NO28G01090 vs. NCBI_GenBank
Match: XP_002114784.1 (hypothetical protein TRIADDRAFT_58613 [Trichoplax adhaerens] >EDV22918.1 hypothetical protein TRIADDRAFT_58613 [Trichoplax adhaerens])

HSP 1 Score: 149.1 bits (375), Expect = 2.700e-32
Identity = 70/132 (53.03%), Postives = 96/132 (72.73%), Query Frame = 0 
Query:  233 AVYYGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 365
            A++Y NRAAC++ + R +EA++DC  AL L P Y+K L+RRAQ +E LDKL++AL DY++V   D +N++AR  V  L  E   R E+LK+E +GKLKDLGN +L+ FGLS DNFK+ +DP T SYS  F+K
Sbjct:   96 AIFYSNRAACYMKLSRHEEALNDCNAALDLNPDYVKVLLRRAQTYEALDKLDEALQDYQSVANKDSSNKMAREAVMRLPNEIKERNERLKDEMIGKLKDLGNMILNPFGLSTDNFKLNKDPTTDSYSVKFEK 227
[Close]
BLAST of NO28G01090 vs. NCBI_GenBank
Match: GAQ87452.1 (tetratricopeptide repeat domain-containing protein [Klebsormidium nitens])

HSP 1 Score: 148.7 bits (374), Expect = 3.600e-32
Identity = 74/132 (56.06%), Postives = 95/132 (71.97%), Query Frame = 0 
Query:  233 AVYYGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 365
            A  + NRAAC+V +     AV +C  ALKLKP YLK ++RRAQA+++LDK E+AL+D+K VL  DP NR A  ++  LE     + EK++EE LGKLK+LGNSVL +FGLS+DNFK  QDPNTG YS +F K
Sbjct:  709 AACHANRAACFVQLALHDAAVRECSEALKLKPDYLKVIIRRAQAYDKLDKQEEALADWKTVLEKDPANRQASAEIRRLEPIVNGKREKMREEMLGKLKELGNSVLGHFGLSVDNFKAVQDPNTGGYSINFSK 840
[Close]
BLAST of NO28G01090 vs. NCBI_GenBank
Match: XP_011626633.1 (tetratricopeptide repeat protein 1 isoform X2 [Amborella trichopoda])

HSP 1 Score: 147.1 bits (370), Expect = 1.000e-31
Identity = 69/129 (53.49%), Postives = 94/129 (72.87%), Query Frame = 0 
Query:  236 YGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 365
            + NRA C+  +GRD E V +C  ALKL P Y+KAL+RRA+A E+L+  E+A++D K +L +DP N  +R  +  LE   A + EK+KEE +GKLKDLGNS+L  FG+S+DNFK  +DPNTGSYS +FQ+
Sbjct:  124 HANRAVCFSKLGRDTETVKECTEALKLNPTYVKALLRRAEANEKLENFEEAIADRKRILELDPANEQSRRAIGRLEPLAAEKREKMKEEMIGKLKDLGNSILGRFGMSVDNFKAVKDPNTGSYSINFQR 252
[Close]
BLAST of NO28G01090 vs. NCBI_GenBank
Match: XP_020528474.1 (tetratricopeptide repeat protein 1 isoform X1 [Amborella trichopoda])

HSP 1 Score: 147.1 bits (370), Expect = 1.000e-31
Identity = 69/129 (53.49%), Postives = 94/129 (72.87%), Query Frame = 0 
Query:  236 YGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 365
            + NRA C+  +GRD E V +C  ALKL P Y+KAL+RRA+A E+L+  E+A++D K +L +DP N  +R  +  LE   A + EK+KEE +GKLKDLGNS+L  FG+S+DNFK  +DPNTGSYS +FQ+
Sbjct:  125 HANRAVCFSKLGRDTETVKECTEALKLNPTYVKALLRRAEANEKLENFEEAIADRKRILELDPANEQSRRAIGRLEPLAAEKREKMKEEMIGKLKDLGNSILGRFGMSVDNFKAVKDPNTGSYSINFQR 253
[Close]
BLAST of NO28G01090 vs. NCBI_GenBank
Match: OQR91889.1 (Mitochondrial Protein Translocase (MPT) Family [Achlya hypogyna])

HSP 1 Score: 147.1 bits (370), Expect = 1.000e-31
Identity = 74/138 (53.62%), Postives = 94/138 (68.12%), Query Frame = 0 
Query:  227 EHKEECAVYYGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 365
            E+    AVY  NRAAC  H+GR +E +DDC VA++L P Y+KA +RRAQA+E+LDKLE+AL D K+VL IDPT + A      L      R EK+K E L KLK  GN++L  FGLS DNF+M QDP TGSY+ +F +
Sbjct:   83 EYAYNRAVYSNNRAACLFHLGRQEECIDDCSVAIELSPKYVKAYLRRAQAYEKLDKLEEALKDVKSVLEIDPTIQSAVESEKRLSAIVTERQEKMKAEMLEKLKGFGNTILGKFGLSTDNFQMVQDPATGSYNINFSQ 220
[Close]
BLAST of NO28G01090 vs. NCBI_GenBank
Match: XP_782508.3 (PREDICTED: tetratricopeptide repeat protein 1 [Strongylocentrotus purpuratus])

HSP 1 Score: 147.1 bits (370), Expect = 1.000e-31
Identity = 73/137 (53.28%), Postives = 98/137 (71.53%), Query Frame = 0 
Query:  228 HKEECAVYYGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 365
            +K+E ++ Y NRAAC V   +++ AV+DC  AL+L P Y+K  +RRA  +E ++KL++AL+D+K VL +DP+   AR     L  +  VR EKLKEE  GKLKDLGN VL  FGLS DNF+MQQDPN+GSYS +FQ+
Sbjct:  248 YKKERSIMYANRAACRVRREQNEMAVEDCNKALELHPHYMKVWLRRANTYELMEKLDEALADFKQVLELDPSCYEARAACMRLPDQIKVRNEKLKEEMFGKLKDLGNMVLRPFGLSTDNFQMQQDPNSGSYSMNFQQ 384
[Close]
BLAST of NO28G01090 vs. NCBI_GenBank
Match: XP_013906013.1 (Tetratricopeptide repeat protein 1 [Monoraphidium neglectum] >KIZ06994.1 Tetratricopeptide repeat protein 1 [Monoraphidium neglectum])

HSP 1 Score: 146.4 bits (368), Expect = 1.800e-31
Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = 0 
Query:  227 EHKEECAVYYGNRAACWVHMGRDQEAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTNRVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQQDPNTGSYSFSFQK 365
            E   + +VYY N AAC + + + Q A + C  AL++  GY+KALMRR+ AFE+LD L+ AL+D K VL +DP+NR A      L+   A R EKLK+E LGKLKDLGN++L  FGLSLDNFK +QDP TG YS  F +
Sbjct:  193 EQAPQRSVYYANMAACCLKLDQPQLAAEHCSCALRIDGGYIKALMRRSMAFEQLDDLDHALADVKQVLELDPSNRPAAAAAARLQPIVAERQEKLKDEMLGKLKDLGNTILGKFGLSLDNFKAEQDPATGGYSIKFSQ 330
The following BLAST results are available for this feature:
BLAST of NO28G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855119.13.000e-7967.12hypothetical protein NGA_0094500 [Nannochloropsis ... [more]
EWM20893.13.000e-7967.12Tetratricopeptide TPR-1 [Nannochloropsis gaditana][more]
CCA23670.11.200e-3253.68Mitochondrial Protein Translocase (MPT) Family put... [more]
XP_002114784.12.700e-3253.03hypothetical protein TRIADDRAFT_58613 [Trichoplax ... [more]
GAQ87452.13.600e-3256.06tetratricopeptide repeat domain-containing protein... [more]
XP_011626633.11.000e-3153.49tetratricopeptide repeat protein 1 isoform X2 [Amb... [more]
XP_020528474.11.000e-3153.49tetratricopeptide repeat protein 1 isoform X1 [Amb... [more]
OQR91889.11.000e-3153.62Mitochondrial Protein Translocase (MPT) Family [Ac... [more]
XP_782508.31.000e-3153.28PREDICTED: tetratricopeptide repeat protein 1 [Str... [more]
XP_013906013.11.800e-3152.90Tetratricopeptide repeat protein 1 [Monoraphidium ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004914NSK004914Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01090.1NO28G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609277gene_9839Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100201g9gene9531Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01090.1NO28G01090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01090 ID=NO28G01090|Name=NO28G01090|organism=Nannochloropsis oceanica|type=gene|length=1258bp
ACAGGCCTTCGCCTTCAAATCCCTGTGGTAGTCTCATCATGGCTGACAAT
GAGACGAAGACCTCTGCGGCCGCCGTCTCCGCTTTCTCTTCTCAAGACCG
AGCATCATCGCCAGCCGCCGCCGTGCCCTCCTCTCACCCGGACTCCACCG
ACGCAGCCGCGACTGCAGTCGCAGCGGCACCTGCTCAAGAGCAAACAGAG
GGAGAAGAGCAATTTTTCGAAGCGGCTGCTGCTGACGCCGCTGCATTAGA
GGCCGAGTTTGGGGTGGAAGACTTGCCAGGGCAATTGGAAGGGTTGCGTG
TTCTGGAACCCGAAGAACGCTCCGCGACCAAAGCGAAGACCATGAAGGAA
AAGGGGAATACGTGTTACGCCGCCGAGAATTACGAGGGGGCCTTAGAATG
TTACGGGCTTGCGATAAAATTATGCCCTTACCAGTATGATAAGGAGAGGG
AGATGGCACGGGCGAGGCGGAAGATGCAGAGGCAGCGGGAGGCGGAGGAG
AGGGAGGAGATGAAGGAGGGGAGGGAAGGAGCAGAGAGAGCGGCAGGCAC
GGTGGTGGAGGAGGTGGACAGTACAACCACGGTTGAGGGGGAAGGCAAGG
AGAACCACTCTCCTTCCATTTCCGGTGCCGCAGCGGCAGCAGAAGCAGCA
GTGACCGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGC
CCCCGAGCCCTTCGTGGAGCACAAGGAGGAATGCGCGGTATATTACGGCA
ACCGTGCCGCTTGTTGGGTGCACATGGGCCGCGACCAGGAGGCTGTGGAT
GACTGCCGTGTTGCTTTGAAGCTCAAACCTGGGTATTTGAAAGCATTAAT
GCGACGGGCACAGGCGTTTGAGAGGCTGGATAAGCTGGAGGATGCCTTGA
GTGATTACAAGGCCGTCCTGGCCATTGACCCTACGAATCGTGTGGCTCGT
GGGAAGGTACCGGGGTTGGAAAAGGAATGCGCGGTGAGAATGGAGAAGCT
AAAGGAGGAGACCTTGGGCAAGTTGAAAGATTTGGGAAATTCGGTATTGA
GTAACTTTGGCTTGAGCCTGGATAATTTCAAGATGCAACAGGATCCGAAT
ACGGGGTCGTATAGTTTCAGTTTCCAAAAGTAGATGAGGGTGGGGTTCAG
GGAGGGGAGGGAGAAGTGGAGAGGAGGAGGGAAGGGAGGGAGGGAAAGGA
GAGAGAAGGGAGGGGAAAGAGATTTCCACTTTGTATGAGGGAAGCGGGAA
ATCATTAG
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protein sequence of NO28G01090.1

>NO28G01090.1-protein ID=NO28G01090.1-protein|Name=NO28G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MADNETKTSAAAVSAFSSQDRASSPAAAVPSSHPDSTDAAATAVAAAPAQ
EQTEGEEQFFEAAAADAAALEAEFGVEDLPGQLEGLRVLEPEERSATKAK
TMKEKGNTCYAAENYEGALECYGLAIKLCPYQYDKEREMARARRKMQRQR
EAEEREEMKEGREGAERAAGTVVEEVDSTTTVEGEGKENHSPSISGAAAA
AEAAVTEKEEEEEEEEEEEEAPEPFVEHKEECAVYYGNRAACWVHMGRDQ
EAVDDCRVALKLKPGYLKALMRRAQAFERLDKLEDALSDYKAVLAIDPTN
RVARGKVPGLEKECAVRMEKLKEETLGKLKDLGNSVLSNFGLSLDNFKMQ
QDPNTGSYSFSFQK*
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Synonyms
Publications