NO28G01080, NO28G01080 (gene) Nannochloropsis oceanica

Overview
NameNO28G01080
Unique NameNO28G01080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4136
Alignment locationchr28:339103..343238 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:339103..343238 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO28G01080 vs. NCBI_GenBank
Match: EWM20891.1 (hypothetical protein Naga_100201g8 [Nannochloropsis gaditana])

HSP 1 Score: 289.7 bits (740), Expect = 4.600e-74
Identity = 170/297 (57.24%), Postives = 211/297 (71.04%), Query Frame = 0
Query:  891 KAKEQGMAGMQEQVAELEEALAAARTAAAEVESENKNRIQELQTRLQQAEHSAHERGAQLAAARADLGVLGRDFEQSETAKNNLQKVLEQFQWEKTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESADRDKIKTKALIDQAKKESLSLRRALDEAISRLHNNESDVVPRQLIGNLLVSYYSQGRPKETLEIIARTLVFKDADRVKVGLKALKP----EAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNET 1184
            +A+E  +  ++E+VA  +  +A     A   E E++N+++ L  RLQ AEH+ HE+GA+LA  RADLGVL RDFEQSETAK NLQKVLEQFQ EK  E+K  E   AKQ AA       R  HLR + Q Q+ DAQAQA L+ E ++R+  K  A   QA++E+ S+R+ALDEAI+RLH+NESDVVPRQLIGNL+VSYYSQGRP ETLEIIARTL   D +R+KVGL+AL+P     A   EGG     G RG +GGL SRV G +SSPRK +VPE+G  EGK+LGDLW+DYLM ET
Sbjct:  413 RAQEADLEALREEVAVWKARVATMEANAVRQEEESENKVRGLLERLQAAEHAVHEQGAELAGTRADLGVLTRDFEQSETAKANLQKVLEQFQREKAAEMKHWERTHAKQLAAXXXXXXXREAHLRTSFQAQIADAQAQATLSVEESERETRKALAECQQARREAASMRKALDEAIARLHSNESDVVPRQLIGNLVVSYYSQGRPTETLEIIARTLGLADEERIKVGLRALRPGGGRRAGVGEGGGAGSPGKRGLVGGLFSRVGGVMSSPRKEFVPENGT-EGKTLGDLWLDYLMKET 708          
BLAST of NO28G01080 vs. NCBI_GenBank
Match: XP_002293396.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89132.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 92.8 bits (229), Expect = 8.300e-15
Identity = 82/291 (28.18%), Postives = 145/291 (49.83%), Query Frame = 0
Query:  897 MAGMQEQVAELEEALAAARTAAAEVESENKNRIQELQTRLQQAEHSAHERGAQLAAARADLGVLGRDFEQSETAKNNLQKVLEQFQWEKTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESADRDKIKTKALIDQAKKESLSLRRALDEAISRLHNNESDVVPRQLIGNLLVSYYS-QGRPKETLEIIARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEEE 1187
            + G++ ++  LEE     +        +      ++ +    A+  A +   QLAAA AD+ +   D  ++  A  NLQ+ LE FQ E+  E+  +   R     A EAA    LE +R+A   ++ D Q  A  + +++  +  K +A I + +K +L+LRRALDEAISRL  ++ DV+ R LI N+++ +++ +G+ K+ + I+  +++    D         K +A   EG             G + R+ GA+++P          LEG S+ + W+++L+ ET EE
Sbjct:  668 VGGLKMELQLLEEERQREKEFLQSAAEKTSGNYVQVVSERDAAKAKARDLEQQLAAAHADVELANTDRNRALMANENLQRALEDFQSERDAEIALLMEQRTADEEAIEAAHNASLEAMREANAAEIRDIQYAANKSVQNSLVEIDKMEATIQECRKNNLNLRRALDEAISRLQTSQEDVIDRSLIKNIILDWHAKKGKAKQDVMILLGSILHFTEDE--------KDKAFISEG------------PGTVDRIVGAVAAPLPPSKLNVDKLEGDSVREKWVNFLLAETGEE 938          
BLAST of NO28G01080 vs. NCBI_GenBank
Match: EJK46883.1 (hypothetical protein THAOC_34430 [Thalassiosira oceanica])

HSP 1 Score: 88.6 bits (218), Expect = 1.600e-13
Identity = 80/293 (27.30%), Postives = 146/293 (49.83%), Query Frame = 0
Query:  897 MAGMQEQVAELEEALAAARTAAAEVESENKNRIQELQTRLQQAEHSAHERGAQLAAARADLGVLGRDFEQSETAKNNLQKVLEQFQWEKTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQ--AQALLAAESADRDKIKTKALIDQAKKESLSLRRALDEAISRLHNNESDVVPRQLIGNLLVSYY-SQGRPKETLEIIARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEEE 1187
            + G++ ++  LEE     R+A    + +      ++      A  +      QL AARADL +   D +++ TA +NL   LE FQ E+  E+  +   R     A +AA Q  LE +++A   Q+ D Q  A   +  + A+ D+++T  L  + ++ES +LR+ALDEAI+RL  ++ DV+ R LI N+++ ++  +G+ K  + I+  +++  + D           + + L G  P          G L +V  A+++P          +EG+++ D W+ +LM ET ++
Sbjct:  555 LGGLKMELQMLEEERLRERSALESAQDKTSEDYAQVLNERDAANATVRNLEQQLVAARADLELAHTDRDRAVTANDNLTMALEAFQSERESEISLLTEQRIADEEAVKAAHQASLEAMKEANAAQMRDVQYAADKSVQNQLAEMDRMETDLL--ECRRESSNLRKALDEAIARLQTSQEDVIDRNLIKNVILDWHGKRGKEKRDVMILLGSILNFNEDE----------KDKALIGEGP----------GALHKVYDAVAAPLPPAKLNVDKIEGETVRDKWVSFLMAETGDD 825          
BLAST of NO28G01080 vs. NCBI_GenBank
Match: OEU07910.1 (hypothetical protein FRACYDRAFT_264790 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 79.3 bits (194), Expect = 9.500e-11
Identity = 80/309 (25.89%), Postives = 149/309 (48.22%), Query Frame = 0
Query:  891 KAKEQGMAGMQEQVAELEE-----------ALAAARTAAAEVESENKNRIQELQTRLQQAEHSAHERGAQLAAARADLGVLGRDFEQSETAKNNLQKVLEQFQWEKTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESADRDKIKTKALIDQAKKESLSLRRALDEAISRLHNNESDVVPRQLIGNLLVSYYS---QGRPKETLEIIARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEE 1186
            K++ +  +G++ ++  L+E            + +A ++  ++ESE    + EL+   Q           QLAAA  DL +   D  +  TA NNLQ  LE FQ E+  E+  ++  R +     ++A  T    L++  + ++ + Q     A ++   +    +  +++ K E   +RR+LDEAI RL + + DV+ R ++ N+LV + +   Q + ++ L+++A  L F + +R KV L             S   R + G      SRV GA+ +P      +   LEG ++ + W+++LM ET++
Sbjct:  572 KSESENSSGLRMELTMLKEQNNREKSKNNSLVDSAMSSRTQIESERDTALSELRDAKQ-----------QLAAALGDLEISRADNTRIMTANNNLQSALEAFQDERQAEMGMIDEQRREAEEGVKSAHATATSALKQIHEAEMYEIQKAGDKAVKNLMHEMELLENDMEKLKSEKNQMRRSLDEAIHRLQSTQEDVIDRNMMKNILVDWCTLNDQNKREQILQLMANLLHFSEDEREKVHLT------------STSHRNSVG------SRVVGALRAPLPPSKADIEHLEGSNVREKWINFLMAETDD 851          
BLAST of NO28G01080 vs. NCBI_GenBank
Match: CBJ31818.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.0 bits (188), Expect = 4.700e-10
Identity = 92/314 (29.30%), Postives = 151/314 (48.09%), Query Frame = 0
Query:  884 ALRAMEFKAKEQGMAGM--QEQVAELEEALAAA--RTAAAEVESENKNRIQELQTRLQQAEHSAHERGAQLAAARADLGVLGRDFEQSETAKNNLQKVLEQFQWEKTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESADRDKIK---TKALID----QAKKESLSLRRALDEAISRLHNNESDVVPRQLIGNLLVSYYSQGRPKETLEIIARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEEE 1187
            AL A E   +E     M   E   ELE AL     R+ + + ++    ++++ Q RL++A    H      AAA A    L +   Q E     L  VLE F  EK  E++ M   R +  A++ A+ +     L+++ + ++ + QAQ L      +RD++K    +A+++    + K++    R AL+ A+ RL  +  D + RQL+ NL+V Y S    K+ LE++AR   F + ++ +VGL    P   G+         T  ++GG     +     P +A   E     G++LGDLW+D+LM ET EE
Sbjct:   80 ALSAKESAEQEALSVKMLYSEVQEELERALQETDQRSTSGQEQATLSKQLRQAQARLEEAREDKHXXXXASAAALASSQALHQAALQRE---QQLGGVLEAFHEEKATEVEVMNKRRQEDLASQAASFEATELSLKRSFEARLSE-QAQTL------ERDRLKDRRAEAVLEGENARIKEDLAKSRAALEAALLRLSGSCDDTLDRQLVTNLIVRYVSSHHKKQVLELMARMFNFTEEEKEQVGLSNRGPTLPGML--------TAMFVGG----GQDGDHDP-EAATAEAKASAGEALGDLWVDFLMAETTEE 370          
BLAST of NO28G01080 vs. NCBI_GenBank
Match: XP_006375354.1 (golgin candidate 4 isoform X1 [Populus trichocarpa] >PNT03830.1 hypothetical protein POPTR_014G091300v3 [Populus trichocarpa])

HSP 1 Score: 76.6 bits (187), Expect = 6.100e-10
Identity = 81/303 (26.73%), Postives = 147/303 (48.51%), Query Frame = 0
Query:  903 QVAELEEALAAARTAAAEVESENKNRIQELQTRLQQAEHSAHERGAQLAAARADLGVLGRDFEQSETAKNNLQKVLEQFQWE-KTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESAD--RDKIKTKALIDQAKKESLSLRRALDEAISRLHNNESD---VVPRQLIGNLLVSYYSQGRPKETLEIIARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEEEGEGEEGVEEAPPS 1200
            Q+  LE+AL  A     EV   N N I       Q+++    +   +LA   + +       E       NLQ  L Q+  E + KE  + + A  K+ +A+      R + L++A  G  +  + +  + A+ +D  R   + K+ +++ ++++  LRRA+++++SRL+    D   +V R+++  LLV+Y+ +   KE L+++ R L F D D+ ++G+          +GG   VRG      GL  R+ G I     A V  +   + +S  D+W+D+L+ ETEE  + E G +   P+
Sbjct:  429 QILHLEKALKQAIAGQEEVRMMNSNEI-------QKSKEMTEDLKKKLANCMSTI-------ESKNVELLNLQTALGQYFAEVEAKEYLERQLALTKEESAK------RFQLLKEAEIGTEESKREKEEILAKLSDVERKFAEGKSRVNKLEEDNAKLRRAVEQSVSRLNRMSMDSDYLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGV--------AQQGGKGVVRGVL----GLPGRLVGGILGGSAAGVQMNLASDNQSFADMWVDFLLKETEEREKRESGQDTGRPN 699          
BLAST of NO28G01080 vs. NCBI_GenBank
Match: PNT03831.1 (hypothetical protein POPTR_014G091300v3 [Populus trichocarpa])

HSP 1 Score: 76.6 bits (187), Expect = 6.100e-10
Identity = 81/303 (26.73%), Postives = 147/303 (48.51%), Query Frame = 0
Query:  903 QVAELEEALAAARTAAAEVESENKNRIQELQTRLQQAEHSAHERGAQLAAARADLGVLGRDFEQSETAKNNLQKVLEQFQWE-KTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESAD--RDKIKTKALIDQAKKESLSLRRALDEAISRLHNNESD---VVPRQLIGNLLVSYYSQGRPKETLEIIARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEEEGEGEEGVEEAPPS 1200
            Q+  LE+AL  A     EV   N N I       Q+++    +   +LA   + +       E       NLQ  L Q+  E + KE  + + A  K+ +A+      R + L++A  G  +  + +  + A+ +D  R   + K+ +++ ++++  LRRA+++++SRL+    D   +V R+++  LLV+Y+ +   KE L+++ R L F D D+ ++G+          +GG   VRG      GL  R+ G I     A V  +   + +S  D+W+D+L+ ETEE  + E G +   P+
Sbjct:  430 QILHLEKALKQAIAGQEEVRMMNSNEI-------QKSKEMTEDLKKKLANCMSTI-------ESKNVELLNLQTALGQYFAEVEAKEYLERQLALTKEESAK------RFQLLKEAEIGTEESKREKEEILAKLSDVERKFAEGKSRVNKLEEDNAKLRRAVEQSVSRLNRMSMDSDYLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGV--------AQQGGKGVVRGVL----GLPGRLVGGILGGSAAGVQMNLASDNQSFADMWVDFLLKETEEREKRESGQDTGRPN 700          
BLAST of NO28G01080 vs. NCBI_GenBank
Match: XP_024440376.1 (golgin candidate 4 isoform X2 [Populus trichocarpa])

HSP 1 Score: 76.6 bits (187), Expect = 6.100e-10
Identity = 81/303 (26.73%), Postives = 147/303 (48.51%), Query Frame = 0
Query:  903 QVAELEEALAAARTAAAEVESENKNRIQELQTRLQQAEHSAHERGAQLAAARADLGVLGRDFEQSETAKNNLQKVLEQFQWE-KTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESAD--RDKIKTKALIDQAKKESLSLRRALDEAISRLHNNESD---VVPRQLIGNLLVSYYSQGRPKETLEIIARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEEEGEGEEGVEEAPPS 1200
            Q+  LE+AL  A     EV   N N I       Q+++    +   +LA   + +       E       NLQ  L Q+  E + KE  + + A  K+ +A+      R + L++A  G  +  + +  + A+ +D  R   + K+ +++ ++++  LRRA+++++SRL+    D   +V R+++  LLV+Y+ +   KE L+++ R L F D D+ ++G+          +GG   VRG      GL  R+ G I     A V  +   + +S  D+W+D+L+ ETEE  + E G +   P+
Sbjct:  297 QILHLEKALKQAIAGQEEVRMMNSNEI-------QKSKEMTEDLKKKLANCMSTI-------ESKNVELLNLQTALGQYFAEVEAKEYLERQLALTKEESAK------RFQLLKEAEIGTEESKREKEEILAKLSDVERKFAEGKSRVNKLEEDNAKLRRAVEQSVSRLNRMSMDSDYLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGV--------AQQGGKGVVRGVL----GLPGRLVGGILGGSAAGVQMNLASDNQSFADMWVDFLLKETEEREKRESGQDTGRPN 567          
BLAST of NO28G01080 vs. NCBI_GenBank
Match: XP_022757473.1 (golgin candidate 3-like isoform X7 [Durio zibethinus])

HSP 1 Score: 76.3 bits (186), Expect = 8.000e-10
Identity = 72/262 (27.48%), Postives = 127/262 (48.47%), Query Frame = 0
Query:  962 RDFEQSETAKNNLQKVLEQFQWEKTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESADRDK-----------------IKTKALIDQAKKESLSLRRALDEAISRLHNNESD---VVPRQLIGNLLVSYYSQGRPKETLEIIARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEEEGEGEEGVEEAPPSPPDL 1204
            R+ E ++   +NL++V+   + E T  LK  +N             +  LE  R+++  ++D   ++ L A E A+  K                  + K  I++ ++++  LRRAL+++++RL+    D   +V R+++  LLV+Y+ +   KE L+++ R L F D D+ ++G+            G   VRG  G  G L+  + G  S+   A +  D     +S+ DLW+D+L+ ETEE  E  E  E+A  S  DL
Sbjct:  321 RENESADDKHDNLKRVIATLEKENT-HLKMEKN-----------ELEAALESTRRSLTSKIDPNASETLDADEHAELSKREKEEILVKLSQTEKMLAERKTRINKLEEDNGKLRRALEQSMTRLNRMSMDSDYLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGVAQ-------HGAGKGVVRGVLGLPGRLVGGIWGGSSADVHANMASD----NQSIADLWVDFLLKETEER-EKRELAEDASSSREDL 558          
BLAST of NO28G01080 vs. NCBI_GenBank
Match: XP_002185991.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65461.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.5 bits (184), Expect = 1.400e-9
Identity = 65/250 (26.00%), Postives = 118/250 (47.20%), Query Frame = 0
Query:  939 AEHSAHERGAQLAAARADLGVLGRDFEQSETAKNNLQKVLEQFQWEKTKELKQMENARAKQRAAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESADRDKIKTKALIDQAKKESLSLRRALDEAISRLHNNESDVVPRQLIGNLLVSYYSQGRPKE---TLEIIARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEGAISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEE 1186
            A+  A +   QL A  ADL V+  D+++   + +NLQ  LE FQ E+  E                      L+ +R+  + ++ + Q  A  A + + +   + +  ++Q + +++ +RR+LDEAI RL +N+ DV+ R L+ N+L+ + S+ + KE    LE++A  L F D ++ KV +                         G   RV    ++P      +   LEG ++ D W+++L+ ETE+
Sbjct:  850 AKAEARDLKQQLVAGLADLEVVRADYDRVILSNSNLQNALESFQNEREAERSIXXXXXXXXXXXXXXXHAAALDAIRQVHEARIHEIQHTADSAVQKSIQQVRELEVKLEQYRIDNVQMRRSLDEAIIRLQSNQEDVIDRSLMKNILLDWLSKTQSKEKRQVLEVMASVLHFSDEEKEKVHITD---------------------QAGRFGRVVETFTAPLPPPKADMQKLEGDNVRDKWVNFLLAETED 1078          
The following BLAST results are available for this feature:
BLAST of NO28G01080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20891.14.600e-7457.24hypothetical protein Naga_100201g8 [Nannochloropsi... [more]
XP_002293396.18.300e-1528.18predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK46883.11.600e-1327.30hypothetical protein THAOC_34430 [Thalassiosira oc... [more]
OEU07910.19.500e-1125.89hypothetical protein FRACYDRAFT_264790 [Fragilario... [more]
CBJ31818.14.700e-1029.30conserved unknown protein [Ectocarpus siliculosus][more]
XP_006375354.16.100e-1026.73golgin candidate 4 isoform X1 [Populus trichocarpa... [more]
PNT03831.16.100e-1026.73hypothetical protein POPTR_014G091300v3 [Populus t... [more]
XP_024440376.16.100e-1026.73golgin candidate 4 isoform X2 [Populus trichocarpa... [more]
XP_022757473.18.000e-1027.48golgin candidate 3-like isoform X7 [Durio zibethin... [more]
XP_002185991.11.400e-926.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004913NSK004913Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01080.1NO28G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659258gene_9211Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100201g8gene9530Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01080.1NO28G01080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01080 ID=NO28G01080|Name=NO28G01080|organism=Nannochloropsis oceanica|type=gene|length=4136bp
CTCCCAAATGCGCAGAAAAGGAACGTCTAGTCGCTGGGTTGTATGCCTCT
TGGCTTTAACTTTAGTAGGACCGCCTGATCAACATTAACAACAGCATAAG
AGGCAGCACGAGGCAGCATGGACAGGACCTGTGCTAGTGGTGGTATCGTG
TGGTCACGTCGTCAAAGAAGACTCGCCCAATTTGAGCATTCAAAATCATC
CTCGCCTTCTTCGTTCCCTTCCTCCCTCTCTCCTGCCTCACCTTTCTACA
CAGCACCATGGACTCCGGGTCTCGCTGGGGATCCCTTCTCAACAGTGCCA
CCAATGTGGTGAAAGCGGCGGCGGCGCAAGCCGTGGACGTGATGGCGCCC
GTCCTCCTCGATGTGCAAGAAGCCGCCGAATCAGAGGGCTGGCGGGAGGA
AGGGGAGGAAGGAGCCGAGGGAGGAGGGGATGCGTACGAGCGATGGTTGC
GAGGCGAAGAGCAGCAACTACCGACAGCAGTAGTGAAGGCTACCGGAATC
GAAGCCCAGGAAATTGAGACGGAGGAAAAGGAGCATCAGCATCATCATCA
TCATAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCGACCGTATGGATCCGCATGGTTGCCC
CCTTCAGTCACTGTCCGTCCGCGTGACAGGCGTTCATCCCATAATCGGCA
GCAGGGGGGTGGAGGCTTGAAGGTGGACGTCGACCAGGAGGAAGACTCGG
TACCTCTGCATGAAGCTGACGAGGAAGAGGAGGAGGAAGGCGGGGAGGAC
ATGGCACAAGCCCAGGCCAATCAAAAGGCGTTGTCACCTCACTATATGGT
GCACGGCAGCGGAAACCGGTTGCTCATGTCGTGTTCTTCGCCTCCTCCAT
CGGCGGCAGCAGACACCCGGAGCACGCCTACCAAGCACTTTCATTTTCCT
TCTCCTCGAACCCCTCAATCCCTTTCTCCTCCTCCTCCTTCTTCTTCTCC
TCTCCCCATCCACGAGCAACATCACCACCAGCGGGAACTCAACCAGCTTT
GTTTCCGCTTGGAAGCTGTCGAAAGCGAACGAAAGGACCTTGCGCAGTCC
TTGCAGGAGCGAGAAGCTCTTCTCGAGAAGACCATGAGGGAGCATCAGAA
GTTACTACAGCAGCAGCAGCAGCAGCACGAAAAGGAGGAGGAGGAGGAGG
AGGAAGAGGTAAAGGAGCTCTGGAAGGCAATAGAAGAGATAGGCCACTTG
ATCGGCGACCGTGAGGTGAGCACCCACCTCTATCAGCACCTGACCCGGCT
CCAGCAACAGCCAGCTTCTCCCAAAGGAAGGAGGGGGGGAGGGAGGGAAG
CAAGGGAGTTGCTGCACCATGCGATAAGAGCAGCAGCGGACGAGAAGACC
AGGCTATTCAATGGCCTGGCTGAAGTTGTCGACGAACGCCCCCCACCCCG
CGAAGTGGACGTGGTCCTTCAGAAGCTGCGGCAGACCCTGGAGGGAGGGA
AGGAGGGCGAGAAGGAGGAAGGGGAGAAGCTCGTGGCGTTGAGAAAAGTG
TGCAGGGAGTTGGAGGAGGAGTTGAGGGAGGCCGTGGCTCCGGCAGTGCT
GCAGGCCAAGGAGGAGGAAGCGGCATCATACAGAGCGAGGTGTCTGGCTT
TGGAGGAAGCGATGGAGAATCTTCGCACGGAGCAGCAGCAGCTACAGCAG
CAGAAGAGGCAACGAAGCGCCAGTATCAGCCCTCGGGAGCGTGAGAAGGA
GGCGGCAGACCTCCGACGACGCTGTGCTGCACTGGAAGAAAAGCTAGAGG
AAATGAAGAAGGAGGATTCCCGGAGTGTCACCCCGCCCATGGTAGCAGCG
CTGAAAGGAGAAGCGGAAGAATTACAGAGGCGGTGCCGCGAACTGGAGGA
GGAGTTGCTCATCACACGACAGCAGCAGGCGAACAACAATAACAACAACA
ACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTGGCTATGGCGAAGCG
GAGGGGTGGCAACGGCGTTGTCGACAGCTGGAAAACGAGCTGCTGGTTCT
GCAACAACAGCAGGAGCAGGCGCAGTCGACCAGCAGTAGCGGAGCTGCAC
CATTGACAACAGCACCACCACCAGCAGCAGCAGCAGCAGCAGCCATGGGC
CTGGCGCCTGCCTTAGCGAAGGCAAAGGAGGAAGCAGCGCGCATGGCGGC
GCTGGCGGACGCACAGGAGAAAGAAATCAGGCAGGTGAAGCAGGAGATAG
AGAATTTACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGAGGAG
GAGGAGAAGGAGGAGGACGGGAAATACGAGGAGCTTGTCGGACTTAGACA
GGAAGTGGAAAGCCTGCAGCACATCCAGCAGCAGCAGCAGGGGAGGGATG
AGGAGATGAGGCACCTGAAGCAGGAGGTGGAGTCCCTGCAGCAGCAGCTC
CAGCAGCAGCAGCAGCAGGATCTTGCCGCTGCCGCAGCCGCTGCCACGGC
TTCAGGCAGCGAGAAGGAAAACCAAAAGGAATACGATTTGCTTGAACAGC
AGCAGAAGCGTCTGGCAGAGGAGGAAGCGAAGGTACGGGCGAAAGATGAG
GAGGCCAACCAGCTCCGGGCAGTGATAGAGCGACAAAAGCAGGAGCTCCT
CCTCCTCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAACGAC
TAGCGGAAGGGGAAGCCAAGATCCGCTCAAGAGACCACGAGGCCACCCAG
CTCCGTGTTGTAATCGAGCAACAACGGGGGTTAGTACGGGCAAAAGCCGA
GGAGTTGGACAAGGCACGGAAGGAAGGCGAGGCGCATTTGCGTCGTTTGG
AAGCGGCGGAGAAGATGGTGAACGGCTTAGTGCAAGAAAAAGACAAGCAC
CTGCAGGCCTTGCGCGCAATGGAGTTCAAGGCTAAGGAGCAGGGCATGGC
CGGCATGCAAGAGCAAGTGGCCGAGTTGGAGGAAGCGCTCGCGGCCGCAC
GAACAGCAGCAGCAGAGGTCGAAAGCGAAAACAAGAATAGGATCCAAGAG
CTCCAAACCAGGCTACAGCAAGCCGAGCACAGCGCCCACGAACGCGGGGC
ACAGCTGGCTGCGGCGCGCGCAGACCTCGGAGTCTTAGGCCGTGATTTCG
AACAGAGCGAAACTGCCAAGAACAATCTGCAGAAGGTCCTGGAGCAATTT
CAGTGGGAAAAAACGAAGGAGTTGAAACAGATGGAAAATGCACGCGCCAA
ACAACGTGCAGCCGAGGAGGCGGCAGCGCAGACACGCTTGGAGCACTTAC
GAAAAGCCATGCAAGGCCAGGTGGACGACGCTCAGGCCCAGGCACTCCTG
GCGGCCGAAAGCGCGGATCGGGACAAAATAAAGACCAAGGCGCTGATTGA
TCAAGCAAAGAAAGAGAGCCTGTCGCTGCGGAGAGCGTTAGATGAGGCCA
TTTCACGGTTGCATAACAACGAGTCTGACGTGGTCCCGAGGCAATTGATC
GGTAATTTACTAGTGTCTTACTACAGCCAAGGCCGACCAAAGGAAACGCT
CGAAATAATTGCGCGAACCCTCGTGTTCAAGGACGCAGATAGGGTGAAGG
TAGGACTAAAGGCCCTTAAACCGGAGGCAGAAGGGCTGGAGGGAGGGAGT
CCAGAAGTGAGGGGAACGAGGGGTTGGTTGGGAGGGCTGTTGTCGAGGGT
GGAAGGGGCGATTAGCTCGCCCAGGAAGGCATATGTCCCGGAGGATGGGG
TCCTGGAGGGGAAATCACTTGGGGATTTATGGATGGATTACTTGATGAAT
GAGACAGAGGAGGAAGGGGAGGGGGAAGAAGGGGTAGAAGAGGCTCCGCC
GTCTCCGCCAGATTTGGCGGCATTGGTCCGGAGAGAGGCGCCAGCAGGAG
CAGTGAAAGCAGAGGGGGAAGGGAATTCGGTAGATGATGCTGCTAAATAT
TTTGGTGTGGGTGGTAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GTGGAAGAGAGCAAGGTGACGGTGACGAGTGATTAA
back to top

protein sequence of NO28G01080.1

>NO28G01080.1-protein ID=NO28G01080.1-protein|Name=NO28G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1293bp
MDSGSRWGSLLNSATNVVKAAAAQAVDVMAPVLLDVQEAAESEGWREEGE
EGAEGGGDAYERWLRGEEQQLPTAVVKATGIEAQEIETEEKEHQHHHHHK
QQQQQQQQQQQQQQQQQQQQQQRPYGSAWLPPSVTVRPRDRRSSHNRQQG
GGGLKVDVDQEEDSVPLHEADEEEEEEGGEDMAQAQANQKALSPHYMVHG
SGNRLLMSCSSPPPSAAADTRSTPTKHFHFPSPRTPQSLSPPPPSSSPLP
IHEQHHHQRELNQLCFRLEAVESERKDLAQSLQEREALLEKTMREHQKLL
QQQQQQHEKEEEEEEEEVKELWKAIEEIGHLIGDREVSTHLYQHLTRLQQ
QPASPKGRRGGGREARELLHHAIRAAADEKTRLFNGLAEVVDERPPPREV
DVVLQKLRQTLEGGKEGEKEEGEKLVALRKVCRELEEELREAVAPAVLQA
KEEEAASYRARCLALEEAMENLRTEQQQLQQQKRQRSASISPREREKEAA
DLRRRCAALEEKLEEMKKEDSRSVTPPMVAALKGEAEELQRRCRELEEEL
LITRQQQANNNNNNNNSSSSSSSSSGGYGEAEGWQRRCRQLENELLVLQQ
QQEQAQSTSSSGAAPLTTAPPPAAAAAAAMGLAPALAKAKEEAARMAALA
DAQEKEIRQVKQEIENLLQQQQQQQQQEKEEEEKEEDGKYEELVGLRQEV
ESLQHIQQQQQGRDEEMRHLKQEVESLQQQLQQQQQQDLAAAAAAATASG
SEKENQKEYDLLEQQQKRLAEEEAKVRAKDEEANQLRAVIERQKQELLLL
QQQQQQQQQQQQKRLAEGEAKIRSRDHEATQLRVVIEQQRGLVRAKAEEL
DKARKEGEAHLRRLEAAEKMVNGLVQEKDKHLQALRAMEFKAKEQGMAGM
QEQVAELEEALAAARTAAAEVESENKNRIQELQTRLQQAEHSAHERGAQL
AAARADLGVLGRDFEQSETAKNNLQKVLEQFQWEKTKELKQMENARAKQR
AAEEAAAQTRLEHLRKAMQGQVDDAQAQALLAAESADRDKIKTKALIDQA
KKESLSLRRALDEAISRLHNNESDVVPRQLIGNLLVSYYSQGRPKETLEI
IARTLVFKDADRVKVGLKALKPEAEGLEGGSPEVRGTRGWLGGLLSRVEG
AISSPRKAYVPEDGVLEGKSLGDLWMDYLMNETEEEGEGEEGVEEAPPSP
PDLAALVRREAPAGAVKAEGEGNSVDDAAKYFGVGGKGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVEESKVTVTSD*
back to top
Synonyms
Publications