NO28G01070, NO28G01070 (gene) Nannochloropsis oceanica

Overview
NameNO28G01070
Unique NameNO28G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1065
Alignment locationchr28:337939..339003 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:337939..339003 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO28G01070 vs. NCBI_GenBank
Match: EWM20894.1 (hypothetical protein Naga_100201g7 [Nannochloropsis gaditana])

HSP 1 Score: 155.6 bits (392), Expect = 1.900e-34
Identity = 110/202 (54.46%), Postives = 138/202 (68.32%), Query Frame = 0 
Query:    1 MGNFLHTFQASVQGLSFSQTGGALFYAIALLIAGFWTLQQVWFSFPTTVPDVAAIPWELFCIADEVVGRKCLVAVGGLVSQGRYLVALGGTATGXXXXXXXXXXXXXXXXXXXXXXLSVGITAVACPGLVVALVSVGGHCPTCMVGLTLFKTLRSKGVLNFAPLHLSANLFTSPYGIGRMGGRGGRKLKESPRVEVEDGEVE 203
            M   L  ++ ++QGLS  Q  GA  Y +AL +AG WT +QVWFSFP+ + DV +IPWEL C+A+E+ GRKC+VAVGG VSQGRYL+A+G ++  XXXXXXXXXXXXXXXXXXXXXX         CPG+V  LV  GG  P C+VG T+ KT  +KGVLN +PL LS      PYG G +     +K KESPR+  EDG+ +
Sbjct:   79 MAQLLLAYKNTLQGLSVLQASGAFVYCLALFLAGAWTTKQVWFSFPSGIEDVHSIPWELLCVANEIAGRKCIVAVGGHVSQGRYLLAIGWSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPGIVYGLVVFGGLSPHCIVGFTVMKTPLAKGVLNLSPLPLSGLRNLEPYGSG-ISKACPKKAKESPRL-WEDGKYD 278
The following BLAST results are available for this feature:
BLAST of NO28G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20894.11.900e-3454.46hypothetical protein Naga_100201g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004912NSK004912Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01070.1NO28G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609270gene_9838Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100201g7gene9529Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01070.1NO28G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01070 ID=NO28G01070|Name=NO28G01070|organism=Nannochloropsis oceanica|type=gene|length=1065bp
AACAACAGACGACAAACAAACAAGAAACGACATGGGAAATTTCTTGCATA
CTTTTCAAGCCAGCGTTCAGGGCCTCTCCTTCTCCCAAACTGGAGGCGCC
CTTTTCTATGCCATCGCCCTCCTCATCGCGGGGTTCTGGACCCTTCAGCA
AGTCTGGTTCTCTTTCCCCACCACCGTCCCGGACGTGGCCGCCATCCCCT
GGGAGCTTTTCTGCATTGCCGATGAAGTGGTTGGACGTAAATGTTTGGTG
GCCGTAGGTGGGCTCGTAAGCCAAGGCCGGTACTTGGTGGCCTTGGGAGG
GACAGCCACAGGTGTCGTTAGCATCGGTCAAATCGCCATTGGAGTGATCA
GCCTCGGATGGCTCGCCTGTGGTATATTGCTCTCCGTCGGCATCACTGCG
GTGGCGTGTCCAGGCCTTGTGGTGGCATTGGTCTCGGTTGGTGGACATTG
TCCGACTTGTATGGTGGGATTGACTTTGTTCAAGACGCTGAGAAGCAAAG
GCGTGTTAAACTTCGCGCCTTTGCATCTGTCCGCCAACCTTTTCACTTCT
CCTTATGGCATTGGTCGTATGGGTGGCCGAGGAGGTAGAAAATTAAAGGA
GTCACCTCGTGTGGAGGTGGAAGACGGTGAGGTGGAGGTAAGGGCATGGA
GACGTCACCAACAGGAGGAGGAGCAGCAGCAGCAGCAGCAAGTAGTAGGA
GGGGAGGAATGGCCACACACTCATCGTCATAGCAGGTACGCACAAGGCGC
TTAACTTTCAATAGTACTGTCGCTGCGCTAGCTGAAATGTAAAGGTCTAA
GAAAAAAGAGGCTGCGCATGTTGTACGCTGAGCTGGCTATTTAGAATGGT
GTGAAAAATAATTGGACAGTATAAATTTTGTAACCGGGTCAACATATGAG
GAAAATAAAGATCACTTGAAAACAAGATGTCCAAGGCATGTCTAGAATTT
TGTACCAAAAGTAGGGATTAAGGAGAAACTAACCAAAGAAGGAGAGAAGG
TCCTTGCCTGCGTGCGTGTGTGAAGATGAAGCCAATGAATGAATTGTACG
ACAGGAATGGTACCA
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protein sequence of NO28G01070.1

>NO28G01070.1-protein ID=NO28G01070.1-protein|Name=NO28G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MGNFLHTFQASVQGLSFSQTGGALFYAIALLIAGFWTLQQVWFSFPTTVP
DVAAIPWELFCIADEVVGRKCLVAVGGLVSQGRYLVALGGTATGVVSIGQ
IAIGVISLGWLACGILLSVGITAVACPGLVVALVSVGGHCPTCMVGLTLF
KTLRSKGVLNFAPLHLSANLFTSPYGIGRMGGRGGRKLKESPRVEVEDGE
VEVRAWRRHQQEEEQQQQQQVVGGEEWPHTHRHSRYAQGA*
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Synonyms
Publications