NO28G01030, NO28G01030 (gene) Nannochloropsis oceanica

Overview
NameNO28G01030
Unique NameNO28G01030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3429
Alignment locationchr28:326916..330344 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:326916..330344 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004904NSK004904Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01030.1NO28G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101411g1gene9523Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01030.1NO28G01030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01030 ID=NO28G01030|Name=NO28G01030|organism=Nannochloropsis oceanica|type=gene|length=3429bp
ATGAGCCGCACCCCTGCGCCGCCGCCATCCTCACAGACAACACCAGCAGC
TCCTGCGACAGTCGCTCCTTCCCCTGACTCCTCCTCCTCCTCCTCTACTA
CTACCAATACAACCACTTCTACTACAACTACCACCAAACCTCGTACCTTC
ACCTCCAGAAACCTCAATCCCGCTTTACAAGCGGTGGCGTCTAAAGCAGA
AGTTCAAGCCCCTCGTCTTATTCCATTAGGCTCTACTTCTCGCTTGACCG
TGATTGGGAAGGGACAGGGACAGTCAGTTTCTTCGCTTTCCTCATCTTCT
CAACCGCTCACGGCGCTCTCACCCATGGTGATGACGCCGTCCTCGATTAA
TATGAGTGGTAGTGGTGGAGGAAGTGGAGGAGGGGGAGGAGGAGGAGGAG
AAGGAGGAGGATTGGTGGACGCACCAATAGGGTCGAAAGGGGGTAGGCTC
AACAGTAGCAGCAGTAGTAATAGTGCTGCTGGCCCGGGCTTGTTGTCGGC
GTCGGCGCCAAATTCGTCAGGAGGAGGGGTGGGTAGTAGCAGTAGCAGCG
GCGGGAATGGGGGCGTTCTGAACCCCCTGACAACCCTGACCGCGACTTTG
AACATGACGAGCGGTACCTCTACTGCGACTGCTGCTCCTTGCAGCAACGC
TGCTGCCGCTTTGTCAGGAGGAGGTGAAGGAGGAGGGGGGGGATGGGGTG
CAAGCTCGTCGTCATCCTCTGAGAGAGAGGAGCACAACAGCAACAGTAGC
AGCCGCAAAAATAGCAACACCAACACCTATTTCGGTTCGGGTGGTGCAGA
TGGAGGAGGAATCTTCTCCTCGTCTCCCTCCTCTGCCACCACTGCTGGTG
CGGGTCCTGCAGGAGGAGTATCCAATCCATGGAGCACCCGGCAGCAGCAA
CGGGAGGAAGAACGACGGCAGCAGCAGCAGCGACAGGCAAATTTTTCTTC
CTCCCCTCCTTCCCACTCTCGCTTCGATGGCGGAGGAAGAAGTGGGGGAG
GGCCCTTATCTGATTACAGGTCAGCTTATTATGGAGATGCCCCTTCCTCG
TCCCTGTCCTCATATGGGCATGCGACTGTTGGCGGGGGTTATGGAGAGAG
AGGAGGAGGGAGGGAAGGAGGGTGGGGTGCAGACGGGGGGGAGGATATAG
GGAAAGGGATCTTTTTCGACAGAGAGGGGGGGGATGGGGAGGAAGAGGAA
GGAAGGAAGGGGGGATgtaaggagaggatacgatcatcgcgatgatggga
ccggtagactcggaggaggaggagaaggaaaaggaggaggaggaaaggtg
ggaggtggagagggggatggcggctttcggggtgggggagggcttggtgg
cagggacaaaggaggaagaggaggagggggggggggggggttaggagggg
gaatggaggggatggaggggaggagggaagtggttggggttctggagcag
GAAGAGAAGCAGGAAAGGATGTCCCTTCTTCTATCCATCCTTCGTCACCC
ATTCACCAACCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGTC
TACTGAAAGAGAAGGAGAAGGGAATGGTTGGGGTGCTGCCTCCTCCTCTT
CCTCCCTCCATCCTTCCTCCTCCTCTGCCCCTCCTGTGCCAATATCATCT
GCGGGAGGATGGGGTCAGTCCTCTTCCCCTTCCCACCTCCCTTCCTCCTC
GTCCTCCCCCGCCCCCTTTCCCCGTTCTTCTCCTCAAGGCAGTGCAGGGG
GATGGGCCTGTTCCTCATCTTCCCTCCCACCTTCCCTCCCTCCCTCAACT
CTGGTTGAAACGGGTGGCTGGGGTGCCACCAGTGGCTTGGCTGCTGCTGT
TGTGATGGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGGGAAGGTAGAAAAAAGGAAGGAGGAGCA
GGGTATAGGGGAGAAAGGGAACGAGGGAGGGGGAGGATGCGGCTGCAGCA
GCAGCATTATCATGGAGGACAGGACGTCCAGGGGGGGTGGGGGAGAGGGG
GGAGGGAGGGAGGAATGGGAAGTAGGGATTCCAACCGCCAGGACTACTCT
CCTCCTTCATCATACGCCCAATCTCCTCCCCCTCCTCCTCAGCATCATCT
CGCCGGGGCCCATGTTCAAATTTTGCACAAGCCCACTGATAGCACTGGCA
GCACCAGCACCAGGAGCAATGCCGACTGCAATGACAACATGATGAGTAGT
AGTCCTCTTCCTCCTATCCATCCTTCCTCTCCTTCCTCCTTTCCTTCCTC
CCCCCCTTCCTCTTCTTCTTTTGGACTTGGAGGCGAAGAAGAAGGAGGAG
GAGGAGGAGGAGGGAAAGGAGGAGAAAGAGGATGCGGAAGAAGGAATACA
GGAAGTCTTGGCGCCATCAACGCCTCCAACGACAATACCACCACCACCAG
CACTGGCAATCGCACCTTACTGCAGCGCCTCGGCCCTTCCCCTCCGCCCC
CTCCCTGCCCAAACCACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAA
CGCGGACGAGGCGGTTCTCTCCGCTCACTGATGCACGTTGCTGTCCCTCC
TCCTGAAGATGATGATGACGACTTGGTGCCTGCTATCCATCCCACCTCCT
TCGGCGACCCCCTCTCCTCGCTCCCTCCAGTCCAGCCTCAATCAAAACAA
CCTCAGTCGCTGTTGGTGCACGGCCGAGGAAGAGGTGGGAAGGGAGGACG
GGGTGGAGGGAGAGTCGCTGATCACCAAGAGAGGGGAACAGGAAGATCGG
CAGTGGCAGCAGCAGCGACGGCCGCCGCCGCTGAAGCGAAACGGGTACGC
CAACAGCACCAGCAGCAAAAGCAGCAGCAAAAGCAGCAGCAGCAGCAGCA
GCAGCAGGAAGAGGGGGATGGAGCAGCCGCAGCGGAAGCAATGGCAGCAG
CAGTCGTCGCTGAAGCGAGGCGGGAGAGGCGGAGGGCAGAGAAGGAGGCG
AGGGGCCCGCGGACGGCCGGTTTGCTCTATGCCCGGACACCGGAAGGTAA
GGTCGTGTTGGTGGGGAAGGGTCATGCCGGCATTCGCACACCACCGCAGC
AGCATCATCAGCAGCAGCAGGATGAAGGAGGAAGAGGAGGAAAAAGTGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATCGTGACTTTGGTGCAGGA
GGGGAATGGAAATGGACGGCTTCTCAAGCAGAAACAGAAGCAGCAGCAGC
AGCAGCCACAGCGGATGGTGACTCTTCACTACACCAACGAGGAGCAGGAC
TCCCACCCTCCCTCGCTCCCTCGCCCTCCTCCTCCTCCCCTTGTGATCCG
TGTTTCTTTGGCAGATGCTTTGGCTGCTGCTGCAGCTGCTCCTACTGCCG
CTACAATTGCTACTGCTTCTGAAGCGTGA
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protein sequence of NO28G01030.1

>NO28G01030.1-protein ID=NO28G01030.1-protein|Name=NO28G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1065bp
MSRTPAPPPSSQTTPAAPATVAPSPDSSSSSSTTTNTTTSTTTTTKPRTF
TSRNLNPALQAVASKAEVQAPRLIPLGSTSRLTVIGKGQGQSVSSLSSSS
QPLTALSPMVMTPSSINMSGSGGGSGGGGGGGGEGGGLVDAPIGSKGGRL
NSSSSSNSAAGPGLLSASAPNSSGGGVGSSSSSGGNGGVLNPLTTLTATL
NMTSGTSTATAAPCSNAAAALSGGGEGGGGGWGASSSSSSEREEHNSNSS
SRKNSNTNTYFGSGGADGGGIFSSSPSSATTAGAGPAGGVSNPWSTRQQQ
REEERRQQQQRQANFSSSPPSHSRFDGGGRSGGGPLSDYRSAYYGDAPSS
SLSSYGHATVGGGYGERGGGREGGWGADGGEDIGKGIFFDREGGDGEEEE
GRKGG*REAGKDVPSSIHPSSPIHQPPPPPPQQQQQQQSTEREGEGNGWG
AASSSSSLHPSSSSAPPVPISSAGGWGQSSSPSHLPSSSSSPAPFPRSSP
QGSAGGWACSSSSLPPSLPPSTLVETGGWGATSGLAAAVVMGGGGGGGGG
EGGGGGGGGGGGREGRKKEGGAGYRGERERGRGRMRLQQQHYHGGQDVQG
GWGRGGREGGMGSRDSNRQDYSPPSSYAQSPPPPPQHHLAGAHVQILHKP
TDSTGSTSTRSNADCNDNMMSSSPLPPIHPSSPSSFPSSPPSSSSFGLGG
EEEGGGGGGGKGGERGCGRRNTGSLGAINASNDNTTTTSTGNRTLLQRLG
PSPPPPPCPNHHHHQQQQQQQQRGRGGSLRSLMHVAVPPPEDDDDDLVPA
IHPTSFGDPLSSLPPVQPQSKQPQSLLVHGRGRGGKGGRGGGRVADHQER
GTGRSAVAAAATAAAAEAKRVRQQHQQQKQQQKQQQQQQQQEEGDGAAAA
EAMAAAVVAEARRERRRAEKEARGPRTAGLLYARTPEGKVVLVGKGHAGI
RTPPQQHHQQQQDEGGRGGKSGGREGGREGGRIVTLVQEGNGNGRLLKQK
QKQQQQQPQRMVTLHYTNEEQDSHPPSLPRPPPPPLVIRVSLADALAAAA
AAPTAATIATASEA*
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Synonyms
Publications