NO28G01010, NO28G01010 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G01010 vs. NCBI_GenBank
Match: EWM20909.1 (rhomboid protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 331.6 bits (849), Expect = 2.300e-87 Identity = 169/275 (61.45%), Postives = 201/275 (73.09%), Query Frame = 0 Query: 2 SPPPSPFIQDVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWSCRVAELMLGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARSTGMSSVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAKSAYWCAVFLFWMSVMMVYSLKATSQVPMPCIDYVNRAM---SEREEGGREGGGSRPPQTVVLHPEGGERG 274 S P SPF+QD++LTP A+TCAVL++IWF LWN+R+S D+V FSY VV + EWWRCLTAAHSH DLAHIGFNV++LW CR AEL LG W F VQSLALV+LSK IML VV+ SS LPAP+ RAWQEGGSVGYSAVIFAWMT+LS S+ GLVE+PS++ PV SL ITQLIVR AS VGHA+GIVAG + ALGTLDW S YW FLFW+ M+ SLKAT+ +P+PC++Y ER G G + P +L+PEG G Sbjct: 90 SMPSSPFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSPYWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVGETSGRTAAPAVSILYPEGRTLG 364
BLAST of NO28G01010 vs. NCBI_GenBank
Match: CBN78198.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 144.1 bits (362), Expect = 6.700e-31 Identity = 86/246 (34.96%), Postives = 135/246 (54.88%), Query Frame = 0 Query: 7 PFIQDVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWSCRVAELMLGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARSTGMSSVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAK-SAYWCAVFLFWMSVMMVYSLKATSQVPMPCIDYVNRAMSEREEGG 252 P + + P + AVL+ ++ +W R+S + SY ++ + EWWR +TAA +H L H+ F++ SLWSCR E LG W + + S V+L++ +HV+ R D S GYS V+FAW+ VLS R + V G V++L + ++++R +SFVGH AG+ AG L + G LD+A+ YW W +++ SLKAT+ +P+P IDYV+ +S R++ G Sbjct: 46 PLSEQLPTYPATCVLSAVLVTVFLAMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHGGLLHLAFSISSLWSCRRIETELGSWGYLLASAHFVVLAEVFEKMFMHVL-LRTGRVVDEV-----SCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVD--LSGRDDLG 283
BLAST of NO28G01010 vs. NCBI_GenBank
Match: XP_024402289.1 (RHOMBOID-like protein 13 [Physcomitrella patens] >XP_024402290.1 RHOMBOID-like protein 13 [Physcomitrella patens] >PNR34857.1 hypothetical protein PHYPA_022755 [Physcomitrella patens]) HSP 1 Score: 135.6 bits (340), Expect = 2.400e-28 Identity = 79/237 (33.33%), Postives = 126/237 (53.16%), Query Frame = 0 Query: 7 PFIQDVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWSCRVAELM----LGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARSTGMS-SVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAKSAYWCAVFLFWMSVMMVYSLKATSQVPMPCID 239 P I D++ P A+ W + + V SY V++QG++WR +T+A SH H+ FN+ +LWS V E LG + + LV+LS ++LG+ HV+ +R ++ +VGYS V+F WMT+L+ R + ++FGL+ +P + P SL T +IV ASF+GH AGI+ G L G + + YW A FW+++ V+SL T+ +P ++ Sbjct: 4 PLIYDILDRPASTCVIAICSATWLYIQQRNVGYSDVGLSYESVISQGQYWRFITSAFSHISFLHLVFNMSALWSLGVVESFNDYNLGTAYYIQYTTILVLLSGLMVLGMYHVLITRAKL---EYYRRVTAVGYSCVVFGWMTILAVRQPSLKLNLFGLLSLPISLAPFESLIFTSIIVPQASFLGHLAGILVGYLIGWGVVQ-GMTIYWAATLTFWIALGFVWSLSRTTSFQLPYLE 236
BLAST of NO28G01010 vs. NCBI_GenBank
Match: CEO95023.1 (hypothetical protein PBRA_003836 [Plasmodiophora brassicae]) HSP 1 Score: 131.0 bits (328), Expect = 5.900e-27 Identity = 78/227 (34.36%), Postives = 128/227 (56.39%), Query Frame = 0 Query: 11 DVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWS-CRVAELMLGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARSTGMSSVF-GLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAKSAYWCAVFLFWMSVMMVYSLKATSQVPMP 236 D++ P+ + T AV ++W WN+R +V SY ++V + + WRC+T+ +SH + H+ FN+ WS + E +G F + +++S + LG ++ R+ P Q SVGYSAV+FAW T S + + F G+V P +++P+++L TQL++ NASFVGH +GIVAG L L W + Y+ L W+ + M +S+K T+ +P+P Sbjct: 7 DLVRWPLTSATVAVCFVLWVWHWNSRSDLARVASSYRRIVIEKQVWRCITSTYSHGSVLHLAFNMSMAWSQGQQFESQIGTVEFARVTTLFIVVSSCLSLGATWLLVHRMNQPGAADKQ---SVGYSAVLFAWYTAGSMQDPWTTLYFLGIVPTPRIVVPILALLFTQLLIANASFVGHLSGIVAGLLFGLDLFSWF-TTYFFLCSLTWIVIGMSWSVKTTTNLPVP 229
BLAST of NO28G01010 vs. NCBI_GenBank
Match: PSC69748.1 (rhomboid family [Micractinium conductrix]) HSP 1 Score: 128.3 bits (321), Expect = 3.800e-26 Identity = 80/232 (34.48%), Postives = 120/232 (51.72%), Query Frame = 0 Query: 11 DVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWSCRVAELM--LGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARSTG---MSSVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAKSAYWCAVFLFWMSVMMVYSLKATSQVPMPCI 238 + + P +L+ ++ L +S V SY +VVT E WRC +H D H+ FN+ +LWS + + LGP F ++ L +L I + + HV+ L Q +++ +VGYS V+F WMT+L+ R G M +FGL VP + P SL IT L+V ASF+GH AGI+AG A G L W S YW + W +++ ++ T Q+ +P I Sbjct: 9 EALQQPATTAIALLLLAVYLLLHQRHLSYADVGLSYDRVVTHRELWRCAACQVAHLDFIHLAFNLSTLWSLGLVKRTSGLGPGYFLHTTVLLFLLCPAICVLLYHVLIVALKREQ---YRDVTAVGYSCVLFGWMTLLATRQPGGITMLPLFGLASVPMWLTPWASLLITSLLVPKASFIGHLAGILAGYAAAFGLLSWL-SPYWTVSLVAWAALLTGHAAARTQQLTIPYI 236
BLAST of NO28G01010 vs. NCBI_GenBank
Match: XP_002974581.1 (RHOMBOID-like protein 13 [Selaginella moellendorffii] >EFJ24101.1 hypothetical protein SELMODRAFT_101862 [Selaginella moellendorffii]) HSP 1 Score: 127.9 bits (320), Expect = 5.000e-26 Identity = 77/229 (33.62%), Postives = 125/229 (54.59%), Query Frame = 0 Query: 7 PFIQDVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWSCRVAE----LMLGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARS-TGMSSVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAKSAYWCAVFLFWMSVMMVYSLKATS 231 P + D++ P + A+ +W + + I +V SY VV QG++WR LT++ SH H+ FN+ +LWS + E + LG + +L LV+LS ++LG+ H++ R ++ +VGYS V+F WMT+L+++ + +FGL+ +P P SL T +IV ASF+GH AGI+ G L A G++ + YW L WM +++ S+ TS Sbjct: 4 PLVYDIIDRPASSCLIALCSAVWLYIQHRSIGYAEVGMSYETVVLQGQYWRILTSSFSHISFLHLVFNMSALWSLGMVEGLKGIGLGVTFYVHYTLLLVLLSAALVLGIYHLLIHRFNL---ELYKRVSAVGYSCVVFGWMTILASKQPSSKLELFGLLSLPINFAPFESLVFTSIIVPKASFLGHLAGIIVGYLIAWGSIQ-GMTNYWFVSLLAWMVLLLGLSIHRTS 228
BLAST of NO28G01010 vs. NCBI_GenBank
Match: XP_003564835.1 (RHOMBOID-like protein 13 [Brachypodium distachyon] >KQK11006.1 hypothetical protein BRADI_2g57550v3 [Brachypodium distachyon]) HSP 1 Score: 127.9 bits (320), Expect = 5.000e-26 Identity = 76/237 (32.07%), Postives = 128/237 (54.01%), Query Frame = 0 Query: 7 PFIQDVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWSC----RVAELMLGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARS-TGMSSVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAKSAYWCAVFLFWMSVMMVYSLKATSQVPMPCID 239 P I +++ P + V LIWF + I V SY + G++WR +T+A SH + H+ FN+ +LWS ++ +L LG + +L LV+LS ++LG+ HV+ + ++ +VGYS V+F WMT+L+A+ + ++FG++ +P P SL T ++V ASF+GH +GI+ G A G + + YW L W+ ++ V+SLK T + + I+ Sbjct: 4 PLIYEILEKPASSSVIGVCSLIWFLIQKRNIGYADVGLSYEAALEGGQYWRIITSAFSHISVVHLVFNMSALWSLGAVEQLGQLGLGVEYYLHYTLVLVVLSGLLVLGIYHVMIQKFKV---EYFRRVTAVGYSCVVFGWMTILAAKQPSSKLNLFGVLSLPISFAPFESLIFTSIMVPQASFIGHLSGIIVGYSIAWGLIH-GMNNYWAITMLGWIVLVFVFSLKRTGSIELRFIE 236
BLAST of NO28G01010 vs. NCBI_GenBank
Match: XP_013663716.1 (RHOMBOID-like protein 13 [Brassica napus]) HSP 1 Score: 127.9 bits (320), Expect = 5.000e-26 Identity = 77/226 (34.07%), Postives = 124/226 (54.87%), Query Frame = 0 Query: 7 PFIQDVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWSCRVAE----LMLGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARS-TGMSSVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAKSAYWCAVFLFWMSVMMVYSLK 228 P + D++ P + + LIWF + I +V SY + TQG +WR +T+A SH + H+ FN+ +LWS V E L LG + +L LV+ S G+++G+ H++ R + ++ +VGYS V+F WMT+LS + + +FG++ +P P SL T +IV ASF+GH +GI+ G + G + ++YW L W+ V+ V+SLK Sbjct: 4 PLLYDIIEKPATSCIITLCSLIWFLIQKKSIGYSQVGLSY-ETATQGHYWRIITSAFSHISVLHLVFNMSALWSLGVVEQLKHLGLGTAYYLHYTLVLVIFSGGLVIGMYHLLIGRF---KIEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGVLSLPISFAPFESLIFTSIIVPQASFLGHLSGILVGYAVSWGLIG-GMNSYWAVTMLGWIVVVFVFSLK 224
BLAST of NO28G01010 vs. NCBI_GenBank
Match: XP_002963281.1 (RHOMBOID-like protein 13 [Selaginella moellendorffii] >EFJ35152.1 hypothetical protein SELMODRAFT_79372 [Selaginella moellendorffii]) HSP 1 Score: 126.7 bits (317), Expect = 1.100e-25 Identity = 77/229 (33.62%), Postives = 124/229 (54.15%), Query Frame = 0 Query: 7 PFIQDVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWSCRVAE----LMLGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARS-TGMSSVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAKSAYWCAVFLFWMSVMMVYSLKATS 231 P + D++ P + A+ +W + + I +V SY VV QG++WR LT++ SH H+ FN+ +LWS + E + LG + +L LV+LS ++LG+ H + R ++ +VGYS V+F WMT+L+++ + +FGL+ +P P SL T +IV ASF+GH AGI+ G L A G++ + YW L WM +++ S+ TS Sbjct: 4 PLVYDIIDRPASSCLIALCSAVWLYIQHRSIGYAEVGMSYETVVLQGQYWRILTSSFSHISFLHLVFNMSALWSLGMVEGLKGIGLGITFYVHYTLLLVLLSAALVLGIYHFLVHRFNL---ELYKRVSAVGYSCVVFGWMTILASKQPSSKLELFGLLSLPINFAPFESLVFTSIIVPKASFLGHLAGIIVGYLIAWGSIQ-GMTNYWFVSLLAWMVLLLGLSIHRTS 228
BLAST of NO28G01010 vs. NCBI_GenBank
Match: BAK04831.1 (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 126.3 bits (316), Expect = 1.500e-25 Identity = 81/238 (34.03%), Postives = 125/238 (52.52%), Query Frame = 0 Query: 7 PFIQDVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVVTQGEWWRCLTAAHSHFDLAHIGFNVMSLWSCRVAELM-----LGPWVFFVQSLALVMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARS-TGMSSVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALGTLDWAKSAYWCAVFLFWMSVMMVYSLKATSQVPMPCID 239 P I +++ P + A+ LIWF + I V SY V G+ WR +TAA SH + H+ FN+ +LWS E + LG + +L LV+LS ++LG+ HV+ R ++ +VGYS V+F WMT+L+A+ + ++FG++ +P P SL T ++V ASFVGH +GI+ G A G + + YW L W+ ++ V SLK T + M I+ Sbjct: 4 PLIYEMLEKPASSGVIALCSLIWFLIQKKGIGYADVGLSYEAAVEGGQHWRLITAAFSHVSVVHLVFNMSALWSLGAVEQLGPQAGLGVQYYLHYTLVLVVLSGLLVLGIYHVMIRRFKVDY---FRRVTAVGYSCVVFGWMTILAAKQPSSKLNLFGVLSLPISFAPFESLIFTSIMVPQASFVGHLSGIIVGYSIAWGLIH-GMNNYWAVTMLGWIVLVFVLSLKRTGSLEMRFIE 237 The following BLAST results are available for this feature:
BLAST of NO28G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G01010 ID=NO28G01010|Name=NO28G01010|organism=Nannochloropsis oceanica|type=gene|length=834bpback to top protein sequence of NO28G01010.1 >NO28G01010.1-protein ID=NO28G01010.1-protein|Name=NO28G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bpback to top Synonyms
Publications
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