NO28G00950, NO28G00950 (gene) Nannochloropsis oceanica

Overview
NameNO28G00950
Unique NameNO28G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr28:306576..307784 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:306576..307784 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO28G00950 vs. NCBI_GenBank
Match: EWM20911.1 (hypothetical protein Naga_100156g8 [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 2.300e-19
Identity = 58/114 (50.88%), Postives = 64/114 (56.14%), Query Frame = 0 
Query:  229 GPKAAATGCCVRISVECDSRACKCKGRRKCLICRGCAGGHCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEQERIFQEARERQQMRDAGMEVLPPASPVRAPLALGQ 343
            G +     CC     E DSRACKCKGRRKCLICRGCAGGHC                                   +EQERIFQEARERQQMRDAG+EV PP SP+R+P+A GQ
Sbjct:  264 GEEKKVAMCCTPNGREGDSRACKCKGRRKCLICRGCAGGHCACVDCLCETCRSREHQRLAKEKTLRETEEREVELAKEQERIFQEARERQQMRDAGVEVAPPTSPLRSPIAHGQ 377
The following BLAST results are available for this feature:
BLAST of NO28G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20911.12.300e-1950.88hypothetical protein Naga_100156g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004897NSK004897Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00950.1NO28G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100156g8gene9514Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00950.1NO28G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00950 ID=NO28G00950|Name=NO28G00950|organism=Nannochloropsis oceanica|type=gene|length=1209bp
ATGGAAGAACCTGTCACGCCGATATTGGCTCCGCAACAAGGCGTCCCACC
CTCCTCTCCGCAGACGCCGAGGAGAGTAGAGTCAGCGGCGGTGGTTCTGG
TTGAGAGCGAGAAGGAGTCTGGGAGAGAACGGGGCACATCGGGAAGCTCA
GACGAGCGGAGAATATCATTGTCTGCTGACAGCACGGCAACAGCTGCAGG
AACAACTCCTATCGATGGAGAGGAAGGGAGGTGCGCAACGGGCACCACCG
TCGCCAGGTCACATGAAGGAAGAAAATGGAGCGGGACCCACATCCTTGTG
AGTAGCAGTAGCATCTCAGCCATTGTAAAGAAAGTGATCCGCAGGATTAA
AGCGCCGGCAAGTAAGAAACGGCACAAGGGCGGAGATGAAAATGAAGAGG
AGCAGGAGGATGTCGAGGGCGAAGGAAAAGATGTTTCCACCACCACCACT
TCCCCGCGTAAACGCACCCGTAATGGCAATGGCAAAAGCGGTAATGGTCA
AAGCAAATGTATGGTTACAATTATAAAAAGAAAGGTCAAGGCTAAGCAGC
AAAACCGGCAGCAACAACAACAACAAGAACAAGGGGTATGCACGATTCAT
GAGAACAGCGAAACCTGCGCGGCCGCTACGGCTGCAATAGCAGCAGCAGC
TGTAGCAACAGCGGGAAAGAAAGAGATGGAGGACGGGCCAAAGGCCGCGG
CGACTGGTTGCTGTGTCCGGATAAGCGTGGAGTGTGATAGTCGCGCATGT
AAGTGCAAGGGCCGTCGGAAGTGCTTAATATGCCGCGGGTGCGCGGGGGG
GCACTGTGTGTGTGAGAGTTGTCCGTGCGAAACCTGCACGAGCCGCGAGC
ATCATCGTCTTGCGAAAGAGAAGACGCAGAGGGAGACAGAAGAAAGAGAG
ATGGAGCTGGCGCAGGAGCAGGAGAGGATTTTCCAGGAAGCGCGCGAGAG
GCAGCAGATGAGGGACGCCGGGATGGAGGTGCTTCCGCCGGCGTCGCCAG
TCCGGGCGCCGCTCGCGCTGGGGCAGCACTTAGTGGAGCAAGATGGTGAG
GTGGAGAAGGAAGAGGAGAGGGGGAGGGTACGGGAAGATAGGGAGGGTAA
TACCTACTGTCAGCAGCAGCAGCAACAGCAGCAGCAGCGGCAGCGAGCAA
TGGATCCTCCGCCCTTCGTGCTGTCGCCAGGACCGTCTTTGGTTTCATCC
AAGGGATAA
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protein sequence of NO28G00950.1

>NO28G00950.1-protein ID=NO28G00950.1-protein|Name=NO28G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MEEPVTPILAPQQGVPPSSPQTPRRVESAAVVLVESEKESGRERGTSGSS
DERRISLSADSTATAAGTTPIDGEEGRCATGTTVARSHEGRKWSGTHILV
SSSSISAIVKKVIRRIKAPASKKRHKGGDENEEEQEDVEGEGKDVSTTTT
SPRKRTRNGNGKSGNGQSKCMVTIIKRKVKAKQQNRQQQQQQEQGVCTIH
ENSETCAAATAAIAAAAVATAGKKEMEDGPKAAATGCCVRISVECDSRAC
KCKGRRKCLICRGCAGGHCVCESCPCETCTSREHHRLAKEKTQRETEERE
MELAQEQERIFQEARERQQMRDAGMEVLPPASPVRAPLALGQHLVEQDGE
VEKEEERGRVREDREGNTYCQQQQQQQQQRQRAMDPPPFVLSPGPSLVSS
KG*
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Synonyms
Publications