NO28G00860, NO28G00860 (gene) Nannochloropsis oceanica

Overview
NameNO28G00860
Unique NameNO28G00860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2934
Alignment locationchr28:284740..287673 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibonuclease ii
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:284740..287673 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0090501RNA phosphodiester bond hydrolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004540ribonuclease activity
GO:0003723RNA binding
Homology
BLAST of NO28G00860 vs. NCBI_GenBank
Match: EWM20916.1 (ribonuclease ii [Nannochloropsis gaditana])

HSP 1 Score: 931.0 bits (2405), Expect = 3.000e-267
Identity = 567/929 (61.03%), Postives = 649/929 (69.86%), Query Frame = 0
Query:   63 PSFSSMPSSFASKTASGATAVTASPRPTIQ-TRRFANLKQKKEAEGESKKDEGFTVEDEAAMVAEFKHMMGGTGSKKPKTKAKNKKLPPRGPGPIELLPETPVEVWRGGQLAFGNYVGHGKKVSIKVRVEHGEIVTLDVGQVTGVWAENMLAGMQEDQEDEINSFLVPSANAPPPTTPESWAALRLRAAKAMKSLTPHALSLEAFWSSAMLRWKRDKAPVDSHHLAAFLFQRPEYEAALKREXXXXXXXXXXXXXXXXXXXXXXXXXXTKSISFLRLPRVTPAQRYAAAILLGSETFRFKRSVPTVETKEEGERGCV--EEEV--LMIVGQGFKPLEPSVVHSREVMSFVQAVR----------------HTEEKRLLMATEGEEEVGXXXXXXXXXXAAGSAQWDASQWRMLHHLEVVALGAGVEGLSATSKQVLKSLGEAATPEGAKSVLLRAGCWTEKKGDGRGQRQADXXXXXXXXXXXATPWPEEILELAKEAFNKTQKRRAALEKVATPNRPGRKGPHGRCDYRKAGLGAYALDPSGSEFADDALGFDPETGEILIHIADVQPLLESAPELEALARHRGEALYLPDGPLHLLPPQALQAASLSDREVNECVTAAVTLGKDGRVVNVRFLLSLIPPVTRVRYDEANDLL-ASSPEQVPAYRRKAAADLAVLLEASTTRRGMTKRNFSDSKRVSRVKRNTNGELEAISFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSGGLDAARFGTGPLRRYIDVLVQHQVVAILKGQAPFSKNEVIQRMTQVNWQSKASQKLRSVSRNKVLLESFATYCASKAXXXXXXXXXXXXXXXXXXXEVILPDVGLRSYVKLPGDWKKGGXXXXXXXXXXXPRRLFDLMAGKAFEVHVLRVDPAKGVIDLEFAHEKDAVGVTIPEVE 970
            P F S     +      A A T+S  P+   TR F+ L ++ E     K       E++ AM+ EFK M+ G G KK K +A   KLPPRGP P++L PE+PVE+W  G LAFGNY G  KK SI VR+EHGE V +D GQ+TG+WA  + +     ++++  +                     LRA +AMKSL+P ALSLE FWS AM RW+RDKAPVDSHHLAAFLF RPEYEA LK E                           K    LRLP V+PAQRYAAA+LL +ETFRFKRSVP V +      G    EE V  L++ G+GF+P+E SVVHSREV++FVQAVR                                  XXXXXXXXXX AGSAQWDASQWR+LHHLEV +LGAGVEGLS+TS+QVLK+LGE  TPEGAK VLLRAG WTE++G   G R+ +           ATPWPE+ILELAKEA  KTQ+RRAAL                  DYR +GLGAYALDP GSEFADDALGFDPETGE+LIHIADVQ L+E  PELEALAR RGEA+YLPDGPLHLLPP ALQAASLSDREVNECVTAAVTLG DG V+N R LLSL+PP+TR+RYDEAN+LL ASS E +PAYRR+AA DL VLL+AS  RR +TKR+FS+ KRVSRV+RNT GELEAI FQRTPAHLMVDEFLALYSEAGRRFLKAH+VTLPLAPGSVSGGLDAARFGTGPLRRY DVL Q Q+V++LKG+ P SK+EVI+RMTQVNWQSKASQKLRS SR KVLLESFATYCA+KA    XXXXXXXXXXXXXXXEV+LPD GLRSYV+LPG WKK G            RRLFDL AGK FEVHVLRVDPA+G I+LEFA E+DAVG+ + E E
Sbjct:   66 PGFFSCSHVASRAGRPPAHAATSSRSPSSSATRIFSALVREGEXXXXXK-------EEDWAML-EFKDMLLG-GKKKAKPRA--PKLPPRGPSPVQLQPESPVEIWHQGHLAFGNYEGRLKKASINVRLEHGERVAVDAGQLTGIWAAPVTS-----EQEQTPASXXXXXXXXXXXXXXXXXXXXLRAGRAMKSLSPRALSLERFWSLAMHRWRRDKAPVDSHHLAAFLFHRPEYEAVLKEEQQERTRESETLDGSG------------KDAFTLRLPNVSPAQRYAAAVLLAAETFRFKRSVPRVLSLGSQAAGSKVGEESVPGLLVEGEGFRPMEQSVVHSREVLAFVQAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGSAQWDASQWRLLHHLEVFSLGAGVEGLSSTSQQVLKALGEPTTPEGAKRVLLRAGYWTERRGAEPG-REDNVAAMTAAVQRMATPWPEDILELAKEALAKTQRRRAALAXXXXXXXXXXXXXXXXXDYRASGLGAYALDPPGSEFADDALGFDPETGEVLIHIADVQALVEGTPELEALARQRGEAIYLPDGPLHLLPPPALQAASLSDREVNECVTAAVTLGPDGSVLNARLLLSLVPPITRIRYDEANELLSASSLEDLPAYRRQAAQDLHVLLQASQARRALTKRSFSEGKRVSRVRRNTEGELEAIGFQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLAPGSVSGGLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVIRRMTQVNWQSKASQKLRSASRGKVLLESFATYCAAKAKAAGXXXXXXXXXXXXXXXEVMLPDAGLRSYVRLPGGWKKKG------KDGAGSRRLFDLEAGKEFEVHVLRVDPARGSIELEFAREEDAVGIPMQEEE 959          
BLAST of NO28G00860 vs. NCBI_GenBank
Match: XP_005854616.1 (weakly cyanobacterial exoribonuclease ii, partial [Nannochloropsis gaditana CCMP526] >EKU21744.1 weakly cyanobacterial exoribonuclease ii, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 258.1 bits (658), Expect = 1.100e-64
Identity = 170/366 (46.45%), Postives = 214/366 (58.47%), Query Frame = 0
Query:   63 PSFSSMPSSFASKTASGATAVTASPRPTIQ-TRRFANLKQKKEAEGESKKDEGFTVEDEAAMVAEFKHMMGGTGSKKPKTKAKNKKLPPRGPGPIELLPETPVEVWRGGQLAFGNYVGHGKKVSIKVRVEHGEIVTLDVGQVTGVWAENMLAGMQEDQEDEINSFLVPSANAPPPTTPESWAALRLRAAKAMKSLTPHALSLEAFWSSAMLRWKRDKAPVDSHHLAAFLFQRPEYEAALKREXXXXXXXXXXXXXXXXXXXXXXXXXXTKSISFLRLPRVTPAQRYAAAILLGSETFRFKRSVPTVETKEEGERGCV--EEEV--LMIVGQGFKPLEPSVVHSREVMSFVQAVRHTEEKRLLMATE 424
            P F S     +      A A T+S  P+   TR F+ L ++ E     K       E++ AM+ EFK M+ G G KK K +A   KLPPRGP P++L PE+PVE+W  G LAFGNY G  KK SI VR+EHGE V +D GQ+TG+WA  + +     ++++  +                     LRA +AMKSL+P ALSLE FWS AM RW+RDKAPVDSHHLAAFLF RPEYEAALK E                           K    L LP V+PAQRYAAA+LL +ETFRFKRSVP V +      G    EE V  L++ G+GF+P+E SVVHSREV++FVQAVRH EE+R L+ ++
Sbjct:   71 PGFFSCSHVASRAGRPPAHAATSSRSPSSSATRIFSALVREGEXXXXXK-------EEDWAML-EFKDMLLG-GKKKAKPRA--PKLPPRGPSPVQLQPESPVEIWHQGHLAFGNYEGRLKKASINVRLEHGERVAVDAGQLTGIWAAPVTS-----EQEQTPASXXXXXXXXXXXXXXXXXXXXLRAGRAMKSLSPRALSLERFWSLAMHRWRRDKAPVDSHHLAAFLFHRPEYEAALKEEQQERTRESETLDGSG------------KDAFTLGLPNVSPAQRYAAAVLLAAETFRFKRSVPRVLSPGSEAAGSKVGEESVPGLLVEGEGFRPMEQSVVHSREVLAFVQAVRHHEERRALLRSD 408          
BLAST of NO28G00860 vs. NCBI_GenBank
Match: CBN79298.1 (weakly similar to cyanobacterial Exoribonuclease II [Ectocarpus siliculosus])

HSP 1 Score: 242.7 bits (618), Expect = 4.900e-60
Identity = 230/803 (28.64%), Postives = 334/803 (41.59%), Query Frame = 0
Query:  153 PGPIELLPETPVEVWRGGQLAFGNYVGH-GKKVSIKVRVEHGEIVTLDVGQVTGVWAENMLAG-------MQEDQEDEINSFLVPSANAPPPTTPESWAALRLRAAKAMKSLTPHALSLEAFWSSAMLRWKRDKAPVDSHHLAAFLF--QRPEYEAALKREXXXXXXXXXXXXXXXXXXXXXXXXXXTKSISFLRLPRVTPAQRYAAAILLGSETFRFKRSVPTVETKEEGERG---------------------------------------------------------------CVEEEVLMIVGQGFKPLEPSVVHSREVMSFVQAVRHTEEKRLLMATEGEEEVGXXXXXXXXXXAAGSAQWDASQWR-----MLHHLEVVALGAGVEGLSATSKQVLKSLGEAATPEGAKSVLLRAGCWT-----EKKGDGRGQRQADXXXXXXXXXXXATPWPEEILELAKEAFNKTQKRRAALEKVATPNRPGRKGPHGRCDYRKAGLGAYALDPSGSEFADDALGFDPETGEILIHIADVQPLLESAPELEALARHRGEALYLPDGPLHLLPPQALQAASLSDREVNECVTAAVTLG-KDGRVVNVRFLLSLIPPVTRVRYDEANDLL-ASSPEQVPAYRRKAAADLAVLLEASTTRRGMTKRNFSDSKRVSRVKRNTNGELEAISFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSG-GLDAARFGTGPLRRYIDVLVQHQVVAILKGQAPFSKNEVIQRMTQVNWQSKASQKLRSVSRNKVLLESFATYCASK 870
            PG + L P  P+E W    L  GNY      + S+ VR E GE +T+D GQ+ GVW E+ ++G             D+I                  WA +R +    ++      L L AFW +A  R K     V   H A FLF  + P      KR                                     R +  +R AAA ++  E  RFKR    V +K  G  G                                                                + + VL+ VG GFK ++ SV  +REV  F + V   E KR            XXXXXXXXXX   SA   A  +      +LH LE  A+G   + L   +K+V+  +   A P  AKS+L+  G WT     E++G         XXX          PW  E LE A     +  +RRA   K       G   P GR D+R A  G Y +D +G+ F DDA   DPET E+ IHI DVQ L+ +   L+ +AR R  + YLP GPL ++PP AL+A S SD+ VNE VT  + L  K G V + R +L+ +PP   + +++ + LL A+   +    R    A     LE    R           +   + ++  +GE +A+    + A  +VDE L +Y++   R  K   V +P   G         +R+GTGPLRRYID+L Q Q+ AIL+G    +K ++++  + + W+   ++  R    +++ LE+ A +C ++
Sbjct:   20 PGTVILQPGDPIEFWHAQGLVLGNYESPVPGRQSLVVRTEAGEPLTIDAGQIVGVWREDEMSGHLPLGSVTAGADGDDIGD------GGSSAAVVAGWAEVREKTRALLQGTPARGLDLGAFWRAASSRGK--GFVVTPAHAAEFLFGAESPAKLGLRKRPPFRFRSPGEAF-------------------------RPSAVERAAAAHVIAGERSRFKR----VVSKRLGPAGVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNQPVLISVG-GFKAVDQSVAVTREVADFCRVV--GEVKRXXXXXXXXXXXXXXXXXXXXXXXXXSALARAGLFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMVEITGKANPTAAKSILVDVGLWTSRRQPEEEGGKXXXXXXXXXXDEAGEEGGVIPWSAEALEAAAALGGERARRRANYGKRRALEEVGAPAPFGRHDFRGASFGVYCIDGAGTRFLDDAFSVDPETREVFIHITDVQGLVPTGSTLDDVARMRAASEYLPQGPLFMMPPTALKAMSFSDKGVNEAVTVGIRLDPKTGGVASSRVMLTTLPPAVPLTFEQTDRLLEAAEKGETGEGRLARVAKEIQALEYVGRRSAEASGRRERGREGVKFRKGPDGETQALEVAASRAQSLVDELLTVYTQEVYRLCKRAGVAMPSLVGQQDRVATGRSRYGTGPLRRYIDILAQRQIAAILRGSGYLNKKDLMETASYLTWRQNKTRASRDEEASRLSLEALAAHCLAQ 782          
BLAST of NO28G00860 vs. NCBI_GenBank
Match: XP_002289378.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92915.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 120.9 bits (302), Expect = 2.100e-23
Identity = 127/434 (29.26%), Postives = 187/434 (43.09%), Query Frame = 0
Query:  448 ASQWRMLHHLEVVALG----------AGVEGLSATSKQVLKSLGEAATPEGAKSVLLRAGCWTEKKGDGRGQRQADXXXXXXXXXXXATPWPEEILELAKEAFNKTQKRRAALEKV---------ATPNRPGRKGPHGRCDYRKAGLGAYALDPSGSEFADDALG--FDPETG----------EILIHIADVQPLL----------ESAPELEALARHRGEALY-LPDGPLHLLPPQALQAASLS---DREVNECVTA-AVTLGKDGRVVNVRFLLSLIPPVTRVRYDEANDLLASSPEQVPAYRRKAAADLAVL-LEASTTRRGMTKRNFSDSKRVSRV--KRNTNGELEAI-----------SFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSGGLDAARFGTGPLRRYIDVLVQHQVVAIL 822
            A+  R+ H LE +A+G               L    ++ L S+    T EGA + L+R G W++   D + ++  +             PW   ILE A+    +  +RR  L K+         A+ + P      GR +     L    +D   + F DD++G      TG          E+LIHIADV  L            S   L   A  RG++ Y LP GPLHLLPP AL+A +L+   D   N CVT  A    +DG++++     ++I     + + EA  LL  + +  P     A + ++V     S   R   +RN +  KR SR+  +     EL+A            SFQR+  H +VD  L LY+ A    +K  +  +P A G  SG     R  T PLRRYID L Q Q +++L
Sbjct:  416 AADERIAHRLECLAMGDIWNDVSDRDDEERALELDVREALSSMDLPLTSEGATNALIRIGRWSQSSEDNKRKKVFE-------------PWSPAILEAARALAMRESRRREHLAKICVTAKNNKTASQSAPSSDDLEGRANL--CSLPCVCIDAKRASFRDDSVGIRLRSSTGRKVNKAASKWEVLIHIADVSDLYFGQEFRGGEDLSTDVLRRAAERRGQSRYDLPLGPLHLLPPVALEALALATNVDGLPNRCVTLWAYIDERDGKLLDAGLERTIISSPKALSFAEATSLLECNIDDTPQSLTNAKSIISVAERNLSLWNRRHRQRNEAARKRESRLATRELVASELKAAGGQSRDDGVGGSFQRSRGHRLVDSSLDLYAYAVGTMMKRANQPIPRAAG--SGADRGGRLATAPLRRYIDGLAQRQALSVL 832          
BLAST of NO28G00860 vs. NCBI_GenBank
Match: EJK53507.1 (hypothetical protein THAOC_27043 [Thalassiosira oceanica])

HSP 1 Score: 118.6 bits (296), Expect = 1.100e-22
Identity = 141/485 (29.07%), Postives = 202/485 (41.65%), Query Frame = 0
Query:  421 ATEGEEEVGXXXXXXXXXXAAGSAQWDASQWRMLHHLEVVALG---------AGVEGLSATSKQVLKSLGEAATPEGAKSVLLRAGCWTEKKGDGRGQRQADXXXXXXXXXXXATPWPEEILELAKEAFNKTQKRRAALEKV--ATPNRPGRKGPHGRCDYR--KAGLGAYALDPSGSEFADDALG--FDPETG----------EILIHIADVQPLLESAPEL-----EALARH----RGEALY-LPDGPLHLLPPQALQAASLSDRE--VNECVTA-AVTLGKDGRVVNVRFLLSLIPPVTRVRYDEANDLLASSPEQ--VPAYRRKAAADL-------AVLLEASTTRRGMTKRNFSDSKRVSRVKRNTNGELEAISFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSGGLDAARFGTGPLRRYIDVLVQHQVVAIL--KGQAPFSKNEVIQRMTQVNWQSKASQKLRSVSRNK 857
            A EG++                S    A+  R++H LE +A+G            + L    ++ L  LG   + EGA+S L+  G W+    D  G                  PW  + LE ++      +KRR  L     +   +P RK P  + + R   + L    +D   + F DDA+G      TG          E+LIHIADV  +      L      AL RH    RG + Y LP GPLHLLPP AL+A SL   E   N CVT  A    +DG+++      +LI   T + + +A  LL    ++  V A    A  +L       A L EA+  R     +    S    R  R+        SFQR+  H +VD  L LY+ A    ++  +  +P APGS+       R GT PLRRYID + Q Q +A+L   G  P +K E           SKA++ + ++   K
Sbjct:  331 AVEGQKFASSAMSKNQMKKGGVSRALTAADERIIHRLECLAMGDAWRRSDNQGDRKDLEVDVRETLIGLGLPLSSEGARSALIEVGRWSNVSEDNLG--------------VVVEPWSADTLEASRSLVKAEEKRRTLLLNTCKSIKTKP-RKKPLAQLEDRFDLSSLPCVCIDAKRTSFRDDAIGIRLRSSTGRKVSKAASKWEVLIHIADVSDIYLKGEGLLPSHDIALLRHAAEQRGMSRYDLPLGPLHLLPPVALKALSLKTDEDSCNRCVTLWAYIDERDGKLLEAGLERTLIASPTALTFADATSLLDCDTDKSNVKAVLSVAHRNLSRWSRRHANLNEAARKREDRLSQKELISNATGRDGRDDG---VGGSFQRSRGHRLVDSSLDLYAFALGTLMRRANQPIPRAPGSMEN--RGGRLGTAPLRRYIDGMAQRQAIAVLCDYGGKPLTKEEC---RLAARLASKANEAISNIKAAK 792          
BLAST of NO28G00860 vs. NCBI_GenBank
Match: XP_002182263.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46164.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 115.9 bits (289), Expect = 6.900e-22
Identity = 131/451 (29.05%), Postives = 193/451 (42.79%), Query Frame = 0
Query:  448 ASQWRMLHHLEVVALG-------AGVEGLSATSKQVLKSLGEAATPEGAKSVLLRAGCWTEKKGDGRGQRQADXXXXXXXXXXXATPWPEEILELAKEAFNKTQKRRAALEKVATPNRPGRKGPHGRCDYRKAGLGAYALDPSGSEFADDALGFDP--ETG----------EILIHIADVQPL-----LESAPE-------LEALARHRGEALY-LPDGPLHLLPPQALQAASLSDR-EVNECVTA-AVTLGKDGRVVNVRFLLSLIPPVTRVRYDEANDLLASSPE-QVPAYRRKAAADLAVLLEASTTRRGMTKR-NFSDSKRVSRV-KRNTNGELEAI------SFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSGGLDAARFGTGPLRRYIDVLVQHQVVAILKGQ-APFSKNEVIQRMTQVNWQSKASQKLRSVSR 855
            A+  R+L  LE +A+G       +    L    ++VL  + ++ +P+GAK  L++ G W+  +   R                   PWP+E+L+ +       +K   + EK              R D     L A A+D   + F DDA+G  P   TG          E+LIHI D+  +     L+S P+       L   AR RG + Y LP GPLHLLPP  LQA SLS R E + CVT  A    + GR+ +     ++I     + Y+ A  L+  S +    ++  KA A L V            +  N +  KR  R+  R  N ++          FQRT  H +VD  L LY+ A    L+     +P+A G+ +    +AR  T PLRRYID   Q Q +A+L G   P +  E  +     N    A    R+V +
Sbjct:  352 AADERILQRLECLAMGELFSKETSDERDLELDVREVLNGMNQSLSPQGAKKALIQVGWWSGMESFDR-----------------IEPWPKEVLDASAWYSKWARKNLGSGEK--------------RVDL--THLPAIAIDAKKTSFCDDAIGVRPRASTGRAVDLAVSKWEVLIHITDMSDIYAATSLDSIPDPEDHLLKLRDAARRRGTSRYDLPLGPLHLLPPVVLQALSLSSRKESHRCVTLWAYIDERTGRLRDAGIERTVISSPVHLSYEAATALMTDSTDANSKSFANKARAILLVSERNLQLWNNQHRDVNQAAQKREQRLAARALNNDVSHTFGASNGHFQRTRGHRLVDSSLQLYAYAINDLLRKAKAPIPIAAGADAS--RSARVATAPLRRYIDGESQRQALAVLCGYGTPMTIGECREAGIAANGARNAISNFRAVRK 767          
BLAST of NO28G00860 vs. NCBI_GenBank
Match: XP_013758174.1 (ribonuclease II [Thecamonas trahens ATCC 50062] >KNC49152.1 ribonuclease II [Thecamonas trahens ATCC 50062])

HSP 1 Score: 112.1 bits (279), Expect = 1.000e-20
Identity = 108/382 (28.27%), Postives = 162/382 (42.41%), Query Frame = 0
Query:  453 MLHHLEVVALGA--GVEG------LSATSKQVLKSLGEAATPEGAKSVLLRAGCWTEKKGDGRGQRQADXXXXXXXXXXXATPWPEEILELAKEAFNKTQKRRAALEKVATPNRPGRKGPHGRCDYRKAGLGAYALDPSGSEFADDALGFDPETGEILIHIADVQPLLESAPELEALARHRGEALYLPDGPLHLLPPQALQAASLSDREVNECVTAAVTLGKDGRVVNVRFLLSLIPPVTRVRYDEANDLLASSPEQ-VPAYRRKAAADLAVLLEASTTRRGMTKRNFSDSKRVSRVKRNTNGELEAISFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSGGLDAARFGTGPLRRYIDVLVQHQVVAILKGQA 826
            +L  LE  ALGA  G  G         T++ +L++LG A  P  A+ +L+  G           + +A              P+P E+ + A EA  +     AA E+V             R D R   + A A+D   +   DDA+G DP +GE+L+H+AD  P +E    L++ A  R  + Y P  P H+LPP+ L A     +     +TA + L ++GRV +     SL+ PV R+ + EA++ L    E  +P Y R AAA +A    +  + R + K    +                       PA L+V E + L +     +  A  V LP       GG  A    T PLRRY+D+     +   L G A
Sbjct:  262 LLLALETYALGAPSGAGGGFMRGRAGHTARSILRTLGLAQEPSAARQLLVECGHLAADASRPVSEAEA-------ALRDTFPPFPAEV-KAAAEAVEE-----AAAERVVELG--------ARVDLRH--IPALAIDAPSASIVDDAIGLDPASGEVLVHVADPLPAIELGSVLDSAAHARIASCYFPGAPQHMLPPRGLAALGFQTQRATYALTARIRLERNGRVASSSLERSLVGPVERLSFGEADEALLDGAEPLLPLYGRAAAARMA---RSRASGRHIPKHRLLEE----------------------PAKLLVQECMNLANAPAVGYAAAAGVPLP-------GGRAATI--TSPLRRYLDLAAHRNLPCALDGGA 586          
BLAST of NO28G00860 vs. NCBI_GenBank
Match: GAX20325.1 (hypothetical protein FisN_9Hh034 [Fistulifera solaris])

HSP 1 Score: 104.4 bits (259), Expect = 2.100e-18
Identity = 118/405 (29.14%), Postives = 171/405 (42.22%), Query Frame = 0
Query:  448 ASQWRMLHHLEVVALGAGV-------EGLSATSKQVLKSLGEAATPEGAKSVLLRAGCWTEKKGDGRGQRQADXXXXXXXXXXXATPWPEEILELAKEAFNKTQKRRAAL----EKVATPNRPGRKGPHGRCDYRKAGLGAYALDPSGSEFADDALGFDPETGEILIHIADVQ----PLLESAPELEALARHRGEALY-LPDGPLHLLPPQALQAASLSDREVNECVTAAVTLG-KDGRVVNVRFLLSLIPPVTRVRYDEANDLLASSPEQVPAYRRKAAAD-----LAVLLEASTTRRGMTKRNFSDSKRVSRVKRNTNGELE----------AISFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSGGLDAARFGTGPLRRYIDVLVQHQVVAI 821
            A+  RM+  LE +ALG          E L    +QVL  +  +   +GAK  LL+ G WT K  D  G+ Q                W   +L  AK      ++  +      E+V   + P       R  +R  G+G  +   +G     +A        EILIHIADV     P  E+   L   A  RG + Y LP GP+HLLPP  LQA SL   + N CVT  V +  +DGR+++     SL+       + EA+ L+        +     + D     + ++ E   T     ++N S + R  R +R T+ E +             F RT AH +VD  L LYS A    L+     +P A G  +G     R  T PLRR++D   Q Q++A+
Sbjct:  150 ATDERMVLRLECLALGELQQEQKPLNEVLELDVRQVLLEMNLSLDADGAKEALLQLGLWTAKDQDS-GKAQF---------------WMPAVLSAAKNYIQSLKQMNSLASVNDERVDLRHLPCICVDGQRVSFRDDGIGLRSRASTGRRCFPEA-----SKWEILIHIADVSDIYVPKDEATSILREAAASRGISRYDLPTGPIHLLPPLVLQALSLRSNKANRCVTIWVYVDERDGRLLDAGVERSLVAAPYEYSFKEASRLMEEKATINLSNSLDGSIDGKTRAILLVTERILTAWSQARQNRSTAAR-KREERMTSKETDFHPENMFDDGRDGFVRTRAHRLVDSALDLYSYAAAALLRRAEAPIPRAQG--AGADRGGRVATSPLRRFLDGEAQRQLLAV 530          
BLAST of NO28G00860 vs. NCBI_GenBank
Match: ESQ16143.1 (hypothetical protein N838_06665 [uncultured Thiohalocapsa sp. PB-PSB1])

HSP 1 Score: 103.6 bits (257), Expect = 3.500e-18
Identity = 89/312 (28.53%), Postives = 135/312 (43.27%), Query Frame = 0
Query:  575 LGAYALDPSGSEFADDALGFDPETGEILIHIADVQPLLESAPELEALARHRGEALYLPDGPLHLLPPQALQAASLSDREVNECVTAAVTLGKDGRVVNVRFLLSLIPPVTRVRYDEANDLLASSP-EQVPA----YRRKAAADLAVLLEASTTRRGMTKRNFSDSKRVSRVKRNTNGELEAISFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLA--------------------------------PGSVSG-GLDAARFGTGPLRRYIDVLVQHQVVAILKGQAPFSKNEVIQRMTQVNWQSKASQK 849
            L AYA+D  G++  DDAL  D E   I +H+ADV  L+    +++  AR RG  LYLP+G +++LP    +   L  ++V+  ++       DG +V++    +LI   TR+ Y EA   LA +P E++ A    YR + AA  A  +E                       R  NGELE     R  +  +V + + +  EA  RF     + +P A                                PGS  G GLD     T PLRRY D+LV  Q+ A+L  Q P +  ++  R  + +    A ++
Sbjct:  249 LPAYAIDDEGNQDPDDALSIDGE--RIWVHVADVAALVAPDSDMDREARARGANLYLPEGIINMLPGAVTEQLGLGLQQVSPALSFGFICADDGGLVDIDIRPTLI-RATRLTYAEAETSLADAPFERLVAAAERYRARRAAHGAASIELPEV-----------------ALRVVNGELEIRPIDRHGSRALVTDLMLMAGEAAARFCSQRGLPIPYATQPAPEQIQQPEGMAAMYAYRRQFKPSRTSVEPGSHFGLGLDVYARATSPLRRYADLLVHQQIRALLHDQQPLTAEQISARAGEADQSGVAVRR 540          
BLAST of NO28G00860 vs. NCBI_GenBank
Match: GAX26767.1 (hypothetical protein FisN_9Lh034 [Fistulifera solaris])

HSP 1 Score: 102.4 bits (254), Expect = 7.900e-18
Identity = 119/409 (29.10%), Postives = 172/409 (42.05%), Query Frame = 0
Query:  452 RMLHHLEVVALG-------AGVEGLSATSKQVLKSLGEAATPEGAKSVLLRAGCWTEKKGDGRGQRQADXXXXXXXXXXXATPWPEEILELAKEAFNKTQKRRAALEKVATPNRPGRKGPHGRCDYRKAGLGAYALDPSGSEFADDALGFD----------PETG--EILIHIADVQ----PLLESAPELEALARHRGEALY-LPDGPLHLLPPQALQAASLSDREVNECVTAAVTLG-KDGRVVNVRFLLSLIPPVTRVRYDEANDLLASSPEQVPAYRRKAAAD-----LAVLLEASTTRRGMTKRNFSDSKRVSRVKRNTNGELE----------AISFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSGGLDAARFGTGPLRRYIDVLVQHQVVAI 821
            R++  LE +ALG          E L    +QVL  +  +   +GAK  L + G WT K  D  G+ Q                W   +L  AK  + ++  + ++L+ V             R D R   L    +D     F DDA+G            PE    EILIHIADV     P  E+   L   A  RG + Y LP GP+HLLPP  LQA SL   + N  VT  V +  +DGR+++     SL+       ++EA+ L+        ++    + D     + ++ E   T     +++ S + R  R +R T+ E E             F RT AH +VD  L LYS A    L+     +P A G   G     R  T PLRR++D   Q Q++A+
Sbjct:  232 RIVLRLECLALGEQQQRQQTSNEVLELDVRQVLLEMNLSLDADGAKEALFQLGLWTAKDQDS-GKAQF---------------WTPSVLSAAKN-YIQSVDQMSSLDSVNDE----------RVDLRH--LPCICVDGQRVSFRDDAIGLRSRASTGRRCFPEASKWEILIHIADVSDIYVPKDEATSILREAAASRGISRYDLPTGPVHLLPPVILQALSLRSNKANRSVTIWVYVDERDGRLLDAGVERSLVAAPYEYSFNEASRLMEKETTNNLSHSSNGSRDGKARAILLVTERIVTAWNQARQSRSTAAR-KREERLTSKETEFHPESMFDDGRDGFVRTRAHRLVDSALDLYSYAAAALLRRVEAPIPRAQG--VGADRGGRIATSPLRRFLDGEAQRQLLAV 608          
The following BLAST results are available for this feature:
BLAST of NO28G00860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20916.13.000e-26761.03ribonuclease ii [Nannochloropsis gaditana][more]
XP_005854616.11.100e-6446.45weakly cyanobacterial exoribonuclease ii, partial ... [more]
CBN79298.14.900e-6028.64weakly similar to cyanobacterial Exoribonuclease I... [more]
XP_002289378.12.100e-2329.26predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK53507.11.100e-2229.07hypothetical protein THAOC_27043 [Thalassiosira oc... [more]
XP_002182263.16.900e-2229.05predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_013758174.11.000e-2028.27ribonuclease II [Thecamonas trahens ATCC 50062] >K... [more]
GAX20325.12.100e-1829.14hypothetical protein FisN_9Hh034 [Fistulifera sola... [more]
ESQ16143.13.500e-1828.53hypothetical protein N838_06665 [uncultured Thioha... [more]
GAX26767.17.900e-1829.10hypothetical protein FisN_9Lh034 [Fistulifera sola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL060nonsL060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004884NSK004884Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00860.1NO28G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533325gene_9190Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00860.1NO28G00860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00860 ID=NO28G00860|Name=NO28G00860|organism=Nannochloropsis oceanica|type=gene|length=2934bp
ATGCACCCATCATGTAAAGGTGTCAGCTGGTCAAAAAGGCGAAGAAGAGG
AGGGAAGGAGAATGATCTCGGCCGCGCGGCAGTCCCCAACACCACCACAT
CCGGCAGCCGTCCACAACCCTTGCTCATCCTAGGCCTCGCCCTGGCCTTG
GGCATGGCGCAACAAGCACAATCTTTCATCATGCGGCCATCTTTTTCGTC
AATGCCGTCGTCTTTTGCCTCGAAGACAGCATCAGGAGCAACGGCAGTCA
CAGCCTCCCCACGCCCGACGATACAGACCCGTCGCTTCGCCAACCTAAAG
CAAAAGAAGGAAGCCGAAGGCGAGAGCAAGAAGGATGAAGGGTTTACCGT
GGAGGACGAGGCGGCAATGGTAGCGGAATTCAAGCACATGATGGGAGGCA
CGGGAAGCAAGAAGCCAAAGACCAAGGCTAAGAATAAGAAGCTTCCGCCT
CGGGGCCCCGGCCCCATCGAGCTGCTCCCCGAGACCCCGGTGGAAGTATG
GCGGGGCGGCCAACTGGCCTTTGGGAACTACGTGGGGCATGGTAAAAAGG
TCTCAATCAAAGTGCGAGTCGAGCACGGGGAGATTGTGACACTGGACGTG
GGGCAAGTGACGGGTGTGTGGGCTGAAAATATGCTTGCTGGCATGCAAGA
AGATCAGGAGGACGAGATCAACAGCTTTTTGGTTCCGAGTGCGAATGCTC
CCCCGCCGACCACGCCTGAGTCATGGGCAGCATTGAGGTTGAGGGCGGCG
AAAGCAATGAAGAGTCTGACGCCCCATGCGTTGTCATTGGAGGCGTTCTG
GTCTTCTGCCATGCTGAGGTGGAAAAGGGATAAAGCCCCAGTGGATTCCC
ACCACCTGGCCGCCTTTCTCTTCCAGCGACCTGAGTACGAAGCGGCCTTG
AAGCGAGAGCAGCAGCAACGGATGCGAGAAGCAGAAAAAGAAGCGGAAGC
AGGGGCTAGCAGTGGTGAAGGTATCGGTAGTGGGATTACCAAATCAATTT
CCTTCCTCAGGCTGCCACGGGTCACCCCTGCGCAACGTTATGCGGCTGCT
ATTTTGTTGGGTTCGGAAACGTTTCGATTTAAGCGAAGCGTGCCTACCGT
TGAGACCAAGGAGGAAGGGGAGAGAGGGTGTGTGGAGGAAGAGGTATTGA
TGATAGTAGGGCAGGGGTTCAAGCCGCTGGAGCCATCAGTGGTGCACTCG
CGAGAGGTCATGTCGTTCGTGCAGGCCGTAAGGCACACGGAGGAGAAGCG
CCTATTAATGGCCACCGAAGGTGAAGAGGAAGTGGGAGACGATGGGACTG
CAGCTGCTGCGGCACCTGCCGCAGGATCGGCACAGTGGGACGCGTCTCAG
TGGCGGATGCTACACCACCTGGAGGTAGTCGCCTTGGGCGCGGGCGTCGA
AGGCCTCTCAGCCACTAGCAAGCAAGTCCTCAAATCTCTAGGGGAGGCAG
CCACGCCTGAAGGTGCCAAGTCTGTCCTCCTCCGTGCTGGGTGCTGGACC
GAGAAGAAAGGAGACGGCCGTGGACAGCGTCAGGCAGATATGGCTGCTGC
TGCTGCTGCGGCTCGGAGCGCTGCAACCCCCTGGCCAGAAGAGATCTTGG
AGTTGGCTAAGGAGGCATTTAATAAGACGCAGAAACGACGGGCAGCGCTG
GAGAAGGTGGCGACACCAAATCGACCCGGTCGCAAAGGGCCGCATGGCCG
GTGCGACTACCGAAAGGCGGGCTTGGGGGCCTACGCGTTGGACCCCTCGG
GCTCGGAGTTCGCGGATGATGCCCTGGGGTTCGATCCAGAGACGGGAGAG
ATCTTGATTCACATTGCTGATGTTCAGCCGTTGCTGGAGAGTGCGCCGGA
GCTTGAGGCGCTCGCGAGACATAGAGGAGAAGCCTTGTATTTGCCTGATG
GGCCACTACACTTGCTGCCGCCGCAAGCGTTGCAGGCGGCGTCTTTGAGC
GATCGAGAAGTGAACGAGTGTGTGACAGCGGCGGTGACTCTGGGGAAGGA
TGGGAGGGTAGTCAATGTCAGATTTTTATTGTCCTTGATCCCGCCGGTTA
CAAGGGTTAGGTACGACGAGGCGAATGATTTGCTGGCCTCTTCTCCTGAG
CAGGTTCCTGCGTACAGGAGGAAAGCCGCTGCCGATCTAGCCGTGTTATT
GGAGGCGTCGACCACTCGAAGGGGAATGACCAAGCGAAACTTTTCCGATA
GCAAGCGTGTGTCGCGGGTGAAGAGGAACACCAATGGGGAGCTGGAGGCG
ATTTCCTTCCAGAGGACTCCGGCTCATTTGATGGTGGATGAGTTCCTGGC
CCTCTATTCGGAGGCGGGTCGTCGCTTCTTGAAGGCGCACAGTGTGACCT
TGCCGCTTGCCCCGGGCTCGGTCTCGGGGGGTTTGGATGCGGCGAGGTTT
GGCACGGGCCCCTTGAGACGGTATATCGACGTGTTGGTGCAGCATCAGGT
CGTGGCTATTTTGAAGGGCCAAGCGCCTTTCTCCAAGAATGAGGTTATTC
AGAGGATGACGCAGGTGAACTGGCAGAGCAAGGCCTCCCAGAAACTGAGA
TCAGTGAGTCGGAACAAGGTTTTATTGGAGTCATTCGCCACTTATTGTGC
CTCGAAAGCCAAGGCGGCGGGGGAAGCCTACGCTGTTGTTACTGCCACTG
CTACCGGAACAGGCACAGAGGTGATACTCCCGGATGTGGGCTTGAGGAGC
TATGTGAAACTGCCGGGGGATTGGAAAAAGGGAGGGAAGGAGGGAGGAGA
AGGAGGAAGGGAAGGAGGGCCCCGTAGATTATTTGATTTGATGGCGGGCA
AGGCGTTCGAGGTGCACGTGCTGAGAGTAGACCCTGCGAAGGGGGTGATC
GATCTGGAGTTTGCCCATGAGAAGGATGCGGTGGGGGTGACGATCCCAGA
AGTGGAGGAAAAAGACGAGGGAGAGGAGGAGTAG
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protein sequence of NO28G00860.1

>NO28G00860.1-protein ID=NO28G00860.1-protein|Name=NO28G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=978bp
MHPSCKGVSWSKRRRRGGKENDLGRAAVPNTTTSGSRPQPLLILGLALAL
GMAQQAQSFIMRPSFSSMPSSFASKTASGATAVTASPRPTIQTRRFANLK
QKKEAEGESKKDEGFTVEDEAAMVAEFKHMMGGTGSKKPKTKAKNKKLPP
RGPGPIELLPETPVEVWRGGQLAFGNYVGHGKKVSIKVRVEHGEIVTLDV
GQVTGVWAENMLAGMQEDQEDEINSFLVPSANAPPPTTPESWAALRLRAA
KAMKSLTPHALSLEAFWSSAMLRWKRDKAPVDSHHLAAFLFQRPEYEAAL
KREQQQRMREAEKEAEAGASSGEGIGSGITKSISFLRLPRVTPAQRYAAA
ILLGSETFRFKRSVPTVETKEEGERGCVEEEVLMIVGQGFKPLEPSVVHS
REVMSFVQAVRHTEEKRLLMATEGEEEVGDDGTAAAAAPAAGSAQWDASQ
WRMLHHLEVVALGAGVEGLSATSKQVLKSLGEAATPEGAKSVLLRAGCWT
EKKGDGRGQRQADMAAAAAAARSAATPWPEEILELAKEAFNKTQKRRAAL
EKVATPNRPGRKGPHGRCDYRKAGLGAYALDPSGSEFADDALGFDPETGE
ILIHIADVQPLLESAPELEALARHRGEALYLPDGPLHLLPPQALQAASLS
DREVNECVTAAVTLGKDGRVVNVRFLLSLIPPVTRVRYDEANDLLASSPE
QVPAYRRKAAADLAVLLEASTTRRGMTKRNFSDSKRVSRVKRNTNGELEA
ISFQRTPAHLMVDEFLALYSEAGRRFLKAHSVTLPLAPGSVSGGLDAARF
GTGPLRRYIDVLVQHQVVAILKGQAPFSKNEVIQRMTQVNWQSKASQKLR
SVSRNKVLLESFATYCASKAKAAGEAYAVVTATATGTGTEVILPDVGLRS
YVKLPGDWKKGGKEGGEGGREGGPRRLFDLMAGKAFEVHVLRVDPAKGVI
DLEFAHEKDAVGVTIPEVEEKDEGEEE*
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Synonyms
Publications