NO28G00840, NO28G00840 (gene) Nannochloropsis oceanica

Overview
NameNO28G00840
Unique NameNO28G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr28:279680..281149 +

Link to JBrowse

Properties
Property NameValue
DescriptionHomeodomain-like superfamily protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:279680..281149 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017930Myb_dom
IPR001005SANT/Myb
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: EWM20940.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 111.7 bits (278), Expect = 6.000e-21
Identity = 76/183 (41.53%), Postives = 99/183 (54.10%), Query Frame = 0 
Query:   19 PSSSSSQARPGACGGSPGPSLPPPPGRFDAQPAPVAAGDGLPSYYAPPPSLQQQSSGDKAYANSNNGFPSLTHLPPHGSVAPASLDGGMGDDEGRXXXXXXXXXXXXXXXXXXXTRLSQEDLEKEQLRGRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSKSRGFA 202
            P++S+S A   +C  SP       PG + +QP+ +A   G    +  PPS   Q + + A+  +   +P  THLP H S     L      + G                      + +    +E +RGRWT EEH+AFL GLRVYGREWKRVAADI TR+SAQIRSHAQKYFAKL+K+RG A
Sbjct:  105 PAASTSDAT--SCELSPS-----VPGHY-SQPSTLAVSAGSAGSHQRPPSQSPQGANETAHPPN---YPLSTHLPEHESNTSRPLSSDAASEYGDGPGGARTESGMWPMPPSGTVGVKR---RRESVRGRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKARGMA 273
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: KUF82046.1 (LHY protein [Phytophthora nicotianae] >KUF82319.1 LHY protein [Phytophthora nicotianae] >KUF91058.1 Myosin protein [Phytophthora nicotianae])

HSP 1 Score: 92.4 bits (228), Expect = 3.800e-15
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 0 
Query:  147 GRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSKSRGFAVSNGGGMALDAEGTAMYIGSEGGYRTKSLLTGRGSGEHDG 242
            GRWTE+EHQ+FL+GLR+YGREWK+VAA I TRTSAQIRSHAQKYFAKL  +R   +    G+++   G   Y  S+GG         + SG+ DG
Sbjct:   99 GRWTEQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKL--ARDDEMRKHSGLSMVMSGPVGYF-SDGGSS-----VAQNSGDEDG 185
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: XP_009526968.1 (hypothetical protein PHYSODRAFT_373030, partial [Phytophthora sojae] >EGZ17910.1 hypothetical protein PHYSODRAFT_373030, partial [Phytophthora sojae])

HSP 1 Score: 91.3 bits (225), Expect = 8.400e-15
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 0 
Query:  147 GRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSK 197
            GRWTE+EHQ+FL+GLR+YGREWK+VAA I TRTSAQIRSHAQKYFAKL++
Sbjct:    4 GRWTEQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLAR 53
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: GAX96438.1 (Hypothetical protein PINS_004318 [Pythium insidiosum])

HSP 1 Score: 90.1 bits (222), Expect = 1.900e-14
Identity = 40/50 (80.00%), Postives = 48/50 (96.00%), Query Frame = 0 
Query:  147 GRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSK 197
            GRWTE+EHQ+FL+GLR+YGREWK+VA+ I TRTSAQIRSHAQKYFAKL++
Sbjct:   25 GRWTEQEHQSFLAGLRLYGREWKKVASKIKTRTSAQIRSHAQKYFAKLAR 74
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: XP_024582390.1 (myb-like dna-binding shaqkyf class family protein [Plasmopara halstedii] >CEG46021.1 myb-like dna-binding shaqkyf class family protein [Plasmopara halstedii])

HSP 1 Score: 89.7 bits (221), Expect = 2.400e-14
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 0 
Query:  147 GRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSKSRGFAVSNGGGMALDAEGTAMYIGSEGGYRTKSLLTGRGSGEHDGLPPS 246
            GRWT++EHQ+FL+GLR+YGREWK+VAA I TRTSAQIRSHAQKYFAKL  +R   +     +     G A Y+ S+GG    S+    G  + DG+  S
Sbjct:   93 GRWTDQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKL--TRDDELRKPSALPTIVSGPAGYL-SDGG---SSVAQYSGDDDGDGVDAS 185
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: OQR92021.1 (hypothetical protein ACHHYP_04136 [Achlya hypogyna])

HSP 1 Score: 89.0 bits (219), Expect = 4.200e-14
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0 
Query:  147 GRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSK 197
            GRWT+EEH++FL GL +YGREWKRVA+ I TRTSAQIRSHAQKYFAKL+K
Sbjct:   21 GRWTDEEHESFLQGLHLYGREWKRVASKIKTRTSAQIRSHAQKYFAKLAK 70
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: CCI46273.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 88.6 bits (218), Expect = 5.400e-14
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 0 
Query:  147 GRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSK 197
            GRWTE+EHQ+FL GLR+YGREWK+VA+ I TRTSAQIRSHAQKYFAK+S+
Sbjct:   78 GRWTEKEHQSFLVGLRLYGREWKKVASKIRTRTSAQIRSHAQKYFAKISR 127
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: OQR98245.1 (valyl-tRNA synthetase [Thraustotheca clavata])

HSP 1 Score: 88.2 bits (217), Expect = 7.100e-14
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0 
Query:  147 GRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSK 197
            GRWT+EEH+ FL GL +YGREWKRVAA I TRTSAQIRSHAQKYFAK++K
Sbjct: 1113 GRWTDEEHENFLQGLNLYGREWKRVAAKIKTRTSAQIRSHAQKYFAKIAK 1162
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: CCA17997.1 (predicted protein putative [Albugo laibachii Nc14])

HSP 1 Score: 87.8 bits (216), Expect = 9.300e-14
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 0 
Query:  147 GRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSK 197
            GRWTE+EH++FL GLR+YGREWK+VA+ I TRTSAQIRSHAQKYFAK+S+
Sbjct:   76 GRWTEQEHESFLVGLRLYGREWKKVASKIRTRTSAQIRSHAQKYFAKISR 125
[Close]
BLAST of NO28G00840 vs. NCBI_GenBank
Match: XP_008606780.1 (hypothetical protein SDRG_02947 [Saprolegnia diclina VS20] >EQC39508.1 hypothetical protein SDRG_02947 [Saprolegnia diclina VS20])

HSP 1 Score: 87.8 bits (216), Expect = 9.300e-14
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 0 
Query:  147 GRWTEEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSKSRGFAVS 204
            GRWT+EEH++FL GL +YGREWKRVA+ I TRTSAQIRSHAQKYFAKL+K     +S
Sbjct:   38 GRWTDEEHESFLLGLNLYGREWKRVASKIKTRTSAQIRSHAQKYFAKLAKDAEMQLS 94
The following BLAST results are available for this feature:
BLAST of NO28G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20940.16.000e-2141.53SANT/Myb domain protein [Nannochloropsis gaditana][more]
KUF82046.13.800e-1554.74LHY protein [Phytophthora nicotianae] >KUF82319.1 ... [more]
XP_009526968.18.400e-1582.00hypothetical protein PHYSODRAFT_373030, partial [P... [more]
GAX96438.11.900e-1480.00Hypothetical protein PINS_004318 [Pythium insidios... [more]
XP_024582390.12.400e-1452.53myb-like dna-binding shaqkyf class family protein ... [more]
OQR92021.14.200e-1480.00hypothetical protein ACHHYP_04136 [Achlya hypogyna... [more]
CCI46273.15.400e-1480.00unnamed protein product [Albugo candida][more]
OQR98245.17.100e-1480.00valyl-tRNA synthetase [Thraustotheca clavata][more]
CCA17997.19.300e-1478.00predicted protein putative [Albugo laibachii Nc14][more]
XP_008606780.19.300e-1471.93hypothetical protein SDRG_02947 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL060nonsL060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004886NSK004886Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00840.1NO28G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560342gene_9187Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100061g3gene9505Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00840.1NO28G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00840 ID=NO28G00840|Name=NO28G00840|organism=Nannochloropsis oceanica|type=gene|length=1470bp
ATGTCAGCGCCACCTGGCGGCCTGCCAATTCCATCCAACCTGGCCTTCCC
TCTACCTTCATCGTCGTCTTCACAAGCCCGCCCCGGTGCCTGCGGTGGCT
CTCCCGGACCCTCGCTTCCTCCTCCTCCTGGCAGATTCGATGCTCAGCCT
GCCCCTGTCGCCGCCGGCGATGGCCTGCCAAgtagggatggtcgattcca
tttggcatatggttgtgcgccgccattccaaccacaccctcctccttcgt
cccattcgccgggctacccacccactggcccttccctttccctcccatca
gGCTACTATGCACCTCCTCCGTCACTACAACAACAATCGTCAGGCGACAA
AGCTTATGCGAATAGCAATAATGGCTTCCCTTCTTTAACACATCTCCCAC
CCCACGGAAGCGTGGCTCCTGCTTCCCTGGATGGTGGTATGGGTGACGAT
GAAGGAAGGAACGTGATCAGCGGTGGTGGTGGTGGAGGAGGAAAAGGAGG
AGGAGGAAAGAAAGGAACGCGCTTGTCGCAAGAAGACTTGGAAAAGGAGC
AGTTACGCGGGCGATGGACGGAGGAGGAGCATCAGGCATTTCTAAGCGGG
CTGCGCGTTTATGGGAGGGAGTGGAAGCGGGTAGCAGCAGACATCCCCAC
CAGAACCAGTGCTCAGATACGGTCTCATGCACAGAAATATTTTGCGAAGT
TGTCTAAATCGAGGGGCTTCGCAGTTTCGAATGGGGGTGGCATGGCCCTA
GACGCGGAGGGGACAGCGATGTACATTGGTTCAGAAGGGGGCTACCGGAC
GAAGAGCCTGTTGACAGGACGAGGTTCTGGTGAGCATGATGGTCTTCCTC
CTTCGCATGCTCCTTGCTTGGCGCAGTATTCTTATATGCCTAATACAGCT
CAGCCGCTCCACGGCCAGCAGCAGCAGCAGCAGCGGCAGCAGCGAAGTCA
TTCTCAGTTGCAGGCAGAGGCGGCCTACAGCGCTTATCACCATCACAACC
ACCACAACAACCACCAGTACCATCAGCAGCAGTCGCACCACCAGCACCAC
CACCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGTACCACCAGCACCAGCGAGTATATTCGCGGACAGAGGAGGAATTGG
CGTTACTGAGTGAAGTGGACGTTGTGCTGGGCAAGCTGAAGGCCCGACGG
GAAGAAGTAATCAGGAAGGAAGGAGGGAAGGCCGAAGGGGAGTCAGAAAA
GAGGCAGAAGCAGGAAGAAGGAGAGGAGCGACAACAAACACCGCGACAGC
AGGGGGAGGAAGGAGCCAAAGAGCTGGCTAGCAGTCACCAGCAAGATGTA
GCGCATCCACACGGCGGACAAGGGGAAACTGAGCCGCGGCAGCTCTCATC
TACGCACTTCCGCACAGCCCAAGGTGAAGGTCACCAGCCCCTCCCCGAAC
AGGGTGCTGCTCCTCCCTAA
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protein sequence of NO28G00840.1

>NO28G00840.1-protein ID=NO28G00840.1-protein|Name=NO28G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MSAPPGGLPIPSNLAFPLPSSSSSQARPGACGGSPGPSLPPPPGRFDAQP
APVAAGDGLPSYYAPPPSLQQQSSGDKAYANSNNGFPSLTHLPPHGSVAP
ASLDGGMGDDEGRNVISGGGGGGGKGGGGKKGTRLSQEDLEKEQLRGRWT
EEEHQAFLSGLRVYGREWKRVAADIPTRTSAQIRSHAQKYFAKLSKSRGF
AVSNGGGMALDAEGTAMYIGSEGGYRTKSLLTGRGSGEHDGLPPSHAPCL
AQYSYMPNTAQPLHGQQQQQQRQQRSHSQLQAEAAYSAYHHHNHHNNHQY
HQQQSHHQHHHHQQQQQQQQQQQQQQQQYHQHQRVYSRTEEELALLSEVD
VVLGKLKARREEVIRKEGGKAEGESEKRQKQEEGEERQQTPRQQGEEGAK
ELASSHQQDVAHPHGGQGETEPRQLSSTHFRTAQGEGHQPLPEQGAAPP*
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Synonyms
Publications