NO28G00630, NO28G00630 (gene) Nannochloropsis oceanica

Overview
NameNO28G00630
Unique NameNO28G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3163
Alignment locationchr28:221634..224796 +

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome b-561 domain containing 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:221634..224796 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006593Cyt_b561/ferric_Rdtase_TM
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
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BLAST of NO28G00630 vs. NCBI_GenBank
Match: EWM20938.1 (cytochrome b-561 domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 276.9 bits (707), Expect = 5.800e-71
Identity = 140/205 (68.29%), Postives = 168/205 (81.95%), Query Frame = 0 
Query:   31 AYRNHACFSFLAPIMRNSARVKLQNIHRGFQILAASCIALGIAFIFGNKVRKHRTIFPTSIHAALGFLVCALLVLQVLAGLEKLDAQRSGVVGRGGGREGG--IHKWHGKTGLLLYDVSMMTVITGLGKSLGWGMMSSFIVTHVILLWVLVHLQMVSKPFRPTGEGGLTERELVELRRDGG--GXXXXXXXXXXXRGSMGGRKDS 232
            AYRNHACF FL+PIMRNSARVKLQNIHRGF ILAA C+ +G+AFIF NKV+KHRTI PTSIHAALGFLVCAL+VLQ++AGLEKLDAQRSGV+G G GR+GG  +++WHGK GL+LYDV+M TV TGL KSLG+G+++  +V HV L+W +VHLQM SKPFRPT +GGLT+REL+ELRR+GG  G           +G+   RKDS
Sbjct:  121 AYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIG-GNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDS 324
[Close]
BLAST of NO28G00630 vs. NCBI_GenBank
Match: EWM20939.1 (cytochrome b-561 domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 276.9 bits (707), Expect = 5.800e-71
Identity = 140/205 (68.29%), Postives = 168/205 (81.95%), Query Frame = 0 
Query:   31 AYRNHACFSFLAPIMRNSARVKLQNIHRGFQILAASCIALGIAFIFGNKVRKHRTIFPTSIHAALGFLVCALLVLQVLAGLEKLDAQRSGVVGRGGGREGG--IHKWHGKTGLLLYDVSMMTVITGLGKSLGWGMMSSFIVTHVILLWVLVHLQMVSKPFRPTGEGGLTERELVELRRDGG--GXXXXXXXXXXXRGSMGGRKDS 232
            AYRNHACF FL+PIMRNSARVKLQNIHRGF ILAA C+ +G+AFIF NKV+KHRTI PTSIHAALGFLVCAL+VLQ++AGLEKLDAQRSGV+G G GR+GG  +++WHGK GL+LYDV+M TV TGL KSLG+G+++  +V HV L+W +VHLQM SKPFRPT +GGLT+REL+ELRR+GG  G           +G+   RKDS
Sbjct:  108 AYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIG-GNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPTEDGGLTDRELIELRREGGCDGGDEKGEKGRGSKGNFVPRKDS 311
[Close]
BLAST of NO28G00630 vs. NCBI_GenBank
Match: CBN75184.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 104.8 bits (260), Expect = 3.900e-19
Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 0 
Query:   31 AYRNHACFSFLAPIMRNSARVKLQNIHRGFQILAASCIALGIAFIFGNKVRKHRTIFPTSIHAALGFLVCALLVLQVLAGLEKLDAQRSGVV-GRGGGREGGIHKWHGKTGLLLYDVSMMTVITGLGKSLGWGMMSSFIVTHVILLWVLVHLQM 184
            AYRNH     L+PIM N  + K + IH   Q+LA+   ALG+ FI GNKV    +I P + H  +G +    +V+QV+ G  K  +  SGV+  R  G++   ++WHGK GLLLYD+S ++V+ GL    G  +++  +   +   W+ V+LQM
Sbjct:   84 AYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITLLAMVMQVVVGRLKHMSFTSGVIDARNRGKK---YRWHGKMGLLLYDLSTVSVVLGLWTFFGLSVVAVVVPLMLAYAWLNVNLQM 234
The following BLAST results are available for this feature:
BLAST of NO28G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM20938.15.800e-7168.29cytochrome b-561 domain containing 1 [Nannochlorop... [more]
EWM20939.15.800e-7168.29cytochrome b-561 domain containing 1 [Nannochlorop... [more]
CBN75184.13.900e-1938.31expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004861NSK004861Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00630.1NO28G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G00630.2NO28G00630.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606735gene_9166Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100061g28gene9483Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00630.1NO28G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G00630.2NO28G00630.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00630 ID=NO28G00630|Name=NO28G00630|organism=Nannochloropsis oceanica|type=gene|length=3163bp
CTCTACTGAATGACATGGGACCAACATGCCCTTGCTTCTACGACAATTTC
TCTTTCAGCCTTTCCCGTCTCTCGTTTTACCTTATTACTATTACTGCTGC
TGCTACTGCTTCTGCTGCTGCTACTGCCTACAACTACTTGCGTTCTTACC
GTCGAGCACCCACCTCATGTGGATATCTCCTATTTACATTACTTACACCG
ACGCGCCTTTCATACTCGCTGCAGACTTCTTACACACCTCCGAGAACATT
TTCACCTCTTGCTGCCCTCCCTTCCCTCCCTTCCCACAACCTTGACCCCC
TCCGCCCTCTTCCCAATCACCGGCTTTACCCCGTGCCCCTCCGCCTCCGC
CCCCTCCTCCTCGTTGTCGTCCAATCCATACAAATCCCTCAAAAATTCTT
CTCGCTCCGCATCATTCATTCGCGCCCGTCTTTGCTCCCTCTCATCTCTT
AAATGACTCTGCACCGTGGCACCCACCAAGGGCACACCCACAAAAACCAT
CACCAAGGACAAACCCCACCCTGCCTGCCACATATGCTGCGCCTTGGCGC
CTTTGTACTGACGCCGGTACCATGGCAAGGCGGCAGCATCCGCATTGGCA
GCAGCGATATGTGGCGTGGCGCTTGAAGGGTTGGCGGCCACTGCTGTTTT
GAGAAGGCGGGGTGTCCGATACATTCTGGCTTACAGGCCGTGGACGCCCG
GACCCGGAAAACGAGGTGGTGACTTTTAGGGGGCTGACCTGGCGGAAGGG
GAACGAGGAAGAACAAATAATGAAAATCGGTTGACTTGTTTCCATGTGTG
TTGTGATAGTTGAGCAAGCGGTAAATATGAGCGGCAGCCATGACAGCTAT
AAGGCACCAGAGATACGGGCAGGCAAGACAGAGCCTGTTCACAAACTCCG
TCCGTGGGAGAATGGGGCAGCGGGGCGCGTGACGATCTCGCTCTCGTCTA
CAGGCGTCTTCCCCTGGGAGGCAATAAACGAACACAGCAAACTAATCAGC
CCACCCCGACACAGCCATGCCCTGCATCGTCAGCATGAAAAGGAATATAA
GTGCCGATGAAGCTTGAGCAGGGATGCCCTAATTTGTTTTTTCTTGCTTT
CTACACTTCTTGCGTCTTTTCCGTCTCATCCGACATCCCGTAGCCGACGT
TCAAACATTCCTTCTCCGTCCTATCTCCAACACCAGCGCCCGACTTACGC
ACAAACTACACAACCACGCAGGGAAGAGGAAATTCCTCTCGTCCTATGAG
CACGTCAGCCGGCTTTTGGCACCGTTTTCGGACCGCCTGGCCCTTTGCTC
GAAGTCCCCCCGAGGCGCCCGACGGCAGCCTCAGCGGCCTGATGATTTAT
AGCAATGACGACGACGACAACCGGGAGACCAGGCCATCGCTAAGAATGCT
TGATGCAGgtgagtaaatacaaagagggaaggatgggggaaatgtggaaa
gtcggggatttgggtgcatgtcgcagaaaaacgatggtacaccctcccag
agattcggctgctggcctctgacgcctcggctcctctgagttagggtgcc
atgcttttccacctcttactgtcgttccccttttcctcctttttaaacga
tgctcctacaattcctattcctacttatttcgtgcctgcgctcatgtcgc
atgtccctccctttctccctctctccagCAACCGACCGCCGCCGTCTCCT
CCTTGCCCGCATCAAGTTCCTTGACCCGCTGGTCGCGCCCAACCTCCTCA
TTCACATACTGGCCCTGTCCCTCCTCCTCTGGATATGGGGGATTTCATTG
GCGCGGGCTCACACCTTCACCTTGTTCTCCTTCCACCCAGTGTTCATGTC
GTTGGGGTGCGTGCTCTTCATGACTGAAGGAATTCTGgtgagcaggaggg
agtgggcagggtggagggatgggaggataggagggagggaaggaatgcgt
ttctagaatgtcgagggatttctccgcttgccatgaagaagaagatcccg
gttccactccattccactgtcttcttctccacctccctacatccctcctt
ccctccctctccctttcctcagGCCTACCGCAACCACGCCTGCTTCTCCT
TCCTGGCGCCCATCATGCGTAATTCTGCCCGTGTGAAGCTCCAGAACATC
CACCGAGGCTTCCAGATACTGGCGGCTTCCTGTATCGCGCTCGGCATTGC
CTTTATCTTTGGCAACAAAGgtcagtcagtaaagcggggagtgcttgggg
cctgggtgggggtaatttccctcccttcctccttgcttctaaccctttcc
atcgtgtctgtcttgtgaagctcgtcaaatcgacgacggcgtcaacctgc
aagcacctccccgcaaactcacatttctgttcctctgtcctctcctcctc
tccctccctcccgccttcagTCCGAAAACACCGCACCATCTTTCCAACCT
CCATCCATGCCGCGCTAGGCTTCCTCGTGTGTGCCCTCCTCGTCCTCCAA
GTCCTTGCGGGCCTTGAGAAATTGGACGCTCAGCGCTCCGGGGTGGTAGG
ACGGGGAGGAGGGAGGGAGGGAGGGATTCATAAGTGGCATGGGAAGACCG
GGTTGCTCTTGTATGATGTGTCGATGATGACGGTCATAACAGGGTTGGGG
AAGAGCTTGGGGTGGGGGATGATGTCCTCCTTTATTGTCACGCATGTGAT
TTTACTATGGGTTTTGGTACACTTGCAGATGGTGAGCAAGCCCTTCCGGC
CGACAGGCGAGGGAGGATTAACAGAAAGAGAGCTAGTGGAGCTGAGGAGG
GACGGAGGGGGGGAAGGAGGAGGAGAAGGAGGGGGAAGGGGGCCAAGAGG
AAGTATGGGGGGGAGGAAGGATAGTAATGGTGGCGAAATTGGGGAGTCAT
TGTGACAGGGGTTGGAGGGAGGGAGGGAGAGAGGAAGGGAGGGGGATGTA
ACGTACGATGAATCAGCGCGCGTCGCGTGAATTGTGAATTGCTTTTTTTA
CGGAGCAAGATAGGAGGAAGAATGATTGAAAAGAGGAGGGAAACGAGGGA
ACACGAAATGACGAAAAGCGATGACCCATAAGGAAAGGAAATGTCAAGTC
AAAAAAGCCACAAGAATGACGACCAAACAGAAGAAGGAAATCATGACGAA
GAGAAGGGCAAGA
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protein sequence of NO28G00630.1

>NO28G00630.1-protein ID=NO28G00630.1-protein|Name=NO28G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MSTSAGFWHRFRTAWPFARSPPEAPDGSLSGLMIYSNDDDDNRETRPSLR
MLDAATDRRRLLLARIKFLDPLVAPNLLIHILALSLLLWIWGISLARAHT
FTLFSFHPVFMSLGCVLFMTEGILAYRNHACFSFLAPIMRNSARVKLQNI
HRGFQILAASCIALGIAFIFGNKVRKHRTIFPTSIHAALGFLVCALLVLQ
VLAGLEKLDAQRSGVVGRGGGREGGIHKWHGKTGLLLYDVSMMTVITGLG
KSLGWGMMSSFIVTHVILLWVLVHLQMVSKPFRPTGEGGLTERELVELRR
DGGGEGGGEGGGRGPRGSMGGRKDSNGGEIGESL*
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protein sequence of NO28G00630.2

>NO28G00630.2-protein ID=NO28G00630.2-protein|Name=NO28G00630.2|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MKKKIPVPLHSTVFFSTSLHPSFPPSPFPQAYRNHACFSFLAPIMRNSAR
VKLQNIHRGFQILAASCIALGIAFIFGNKVRKHRTIFPTSIHAALGFLVC
ALLVLQVLAGLEKLDAQRSGVVGRGGGREGGIHKWHGKTGLLLYDVSMMT
VITGLGKSLGWGMMSSFIVTHVILLWVLVHLQMVSKPFRPTGEGGLTERE
LVELRRDGGGEGGGEGGGRGPRGSMGGRKDSNGGEIGESL*
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Synonyms
Publications