NO28G00540, NO28G00540 (gene) Nannochloropsis oceanica

Overview
NameNO28G00540
Unique NameNO28G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3933
Alignment locationchr28:192252..196184 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:192252..196184 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00540.1NO28G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606697gene_9156Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00540.1NO28G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00540 ID=NO28G00540|Name=NO28G00540|organism=Nannochloropsis oceanica|type=gene|length=3933bp
ATGAGCCGCAGTGTCCCATCCCATTCCGCCAATAATGTATCATCATCCGA
GCCGCCCCCTTCTGCCTTTCCTCCCTCCCTCCCTCCCTCCGCTTTCCGCC
TTGAGTCCTTTGCCAGCATCGCCAGTGGCAGCACCAATACTCCACATTGC
TGCGTCCACGGTCAAGTAGTTCTCGATGGTTTGGGGACCAAAAAGGTGAG
AGAGAAGGCCAAGGTGGACATGGTGTGTGTGATGGGAGGGCATATGGCCT
TGTCTTTGACCGTGAGGACAACTGGTGGTGGTGCTGCTGATGATGATGAC
ACTTCTGCTATCGCCACTGCGCGTTCCTCTCCAACCCCTTCTTCGCCTCC
TCCTCCGACTACTTTATCGAGTGCTGATTGTGGTAGGAGCGCGAAAAATA
CCATCACGCTCTTGCTGGGCTTCATTGCTCGTGGCCCTGAAGAACAGGAG
GAGGACGAAGAGGAGGAGGAGGAGGAAGGGGAGGAGGGAGAAGAGGAGGG
AGGGAGGGAGAAAAAAGCCGATACGTCTGAAGAGGAAGAGGAGTATGACG
ACGAAGAGCACGTAAGAGGAGTCTGGAGAAGAAAGAGAAGAAAAGGAAAG
GGGAAGGGCATTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAA
TAGTCTTTCGGTACGATGCCAGAAGCGTTTCCTCTCTTGGTTGGCCAGGG
GTGTAACGGGAGGAAAAGGAGAGGAAAGCGACCAAGAGAAAGAAAGACGG
GATCCTCCTTGGTGCGCGGGTTTGGTGTTGGGAGGAGGAGGGGGAGGAGG
AGCCGAGGGAGGAAGTGTGGGACGGACAGTGGGCCTGCAGTTTTTCAAGG
GGTGGAAGGATGGAGGAGGGGAGGGAGGGGGAGAGGAGGAGACGCGGTTG
CTGGCCGTGCAGGGGGATGGGCTGGTGAGGATGTGGGCCTTGAGAGGAGG
AGGACGGGAGGGGGCGAGGGAAGGAGGGAGGGAGGGGGGGAGGTTGAAAT
GGGTGGCATTGACGAGCTTTCTCCTTCCCTTCCTCCATCGTGTCCTGCCT
GGGCTGATGACTTTCAGCAGTGTCAGTCGACGGCTTGTCTATGTGGAGGA
GATGAGGGAGGGAGGGAAGGAGGGAGGGATGGCGAGGACGCCGGCCTTGG
CGCCACCGGAGCGGTTGAGGGTTGTGTCGAGGGAGGTGATTTTTACATCT
GTCGgtaaggaaggagggagagaagaggggagggagagacggggaggaat
gggatggcaagcagcctcgtttattgatttattgtgaacccctttcttta
tcgtgcatgcactcctcccctcctcccttcttccttccctccctccccaa
accagACAAGAGCCCTTCCGAAATCATCACCGTGGGATGCGCAGTCCCCC
TCTTCCACAGCCTCGCTCCTTCCCTCCTTTCCCTTCTTCCGGGTAGCATC
GGCTGCTGGCTTGTCACTACGACTCATGTCCACTACAACTGCTACCACAC
CCGCCGCTTCCTCTCCCTTCCCCGTCAAGACCCTGCCCCTCTCTCCCCCC
CTCCCTCCTCCTCGCCTTCTCTCTCCTCCTCTCCCCTCCATTTCGCCCTG
CATGCCATCACCGAGCAGCTTTTTGTCTTCTCTCCAGAGGGAGGGAGAGG
AAAGCAGGGAGAATGTGAGGGAGGAAGGGGCGCGTTGGGCGTCTACTCCT
ACGACAGCCCGAAGAGAGGCAGCTGCTTGACCTACAAGGTCCTTCACCCC
TCTCTCCATCCCTCCCTCCCTCCCTCACTCGTCGTCACCTCCTTCGCCGT
GCACCGGGACCTGGCTTGCTTTCTCCTCTCCTCCTCCTCTTCTTCCTCCT
CGTCGTCGTCCTCCTCCTTCCCCCCCTCCTCCCCCCCCTCTTCTTCCCTT
TCTCCCTCCCTCGCCATCTACCACCTTCGCACTGGACGTCTCTGGGCTCT
CCTCCCCTTGCCCAGGGACACAGACGAAGAGGACGAAGCAGAGAAGGATC
AAGGGATGGAAGGAGGAAAAGCAGGACGATGGCAAGGAAGGGAGGGAGGG
CAGAAGGGAGGGAGGGAAGGAGGGAGGGAGGGCAGGAGTGGAAGGTACAG
TTTTTGGATTGATGCGCATGAAGGCACGGCTATCGGCGTGTGGAAAGGGG
AAGGAGGAAATGCTATATATCGCCTTTACCTCCCCTCCGCTCAGGAAGAA
CGAACTTTCCTCCTCTCCTCCTCCTCCTCCTCCTCCTTTTCCTTCTCCCC
CTCCCCTCCTCCCTCCCTCCCACTCCCTTCCCTCTCTTACACCTACGGGC
TATCCATGGCACACAGTTCTGGCCATGAGGCGCTTGCTGCTTATGCCCGC
CCGCCCTCCCTCCCTCGCTCCCTCCCTCCCTCCCTTCCTCTAGTCCTCCG
AACGGCCTTAGTCCTCGGGGCGGAGGAAGGGGGTGAAGACGAGGAAGGGA
GGGAGGAAGAGGTGGCAGCAGAAGTCAAGAACAAGTTACGAGACCTCCAA
AGTTTAAGAAGAGAGATTGAGCGACTCGTCAGCCCTTCCTCCCTCCCTCC
CTCCTCGTCCGCGGCGAATGAGAATAAGAAGGAAACACGTCAGCAAGCCC
TGGCCCGCGTGGCGACCAAGATGAGGAGGGAGGCAGGGAGAGAGGGAGGG
AGGGGGGGGATAACGACACCGTTGTTGTTGGCAGTCGAACCGTTGTTGAC
CAAATGGTTGGAAGAGCGAGAGAGGGAGGAGGAGGGGGAGGGCGGCGAGG
AATCGGACGGAGAAAGACGTGAGGAGGCCGGGGAAGGGAGGGAGGGAGGG
AGGGAAGGAGGGGGGACGCTATCTGCCATGGGGCTGGCCTGGCGGTTGGC
GACATGTACGACTGCGGAAGACACGGAGCGCTTGCTAACATTTCTTCTCG
CGCCTCGCTTGGAAGGAGGGAGGAAGGGGAAGCAGTTGGGGGAGGGAGGA
CTGCAGCAGCAGTTGTTTCTATTTGTGTGCGCGCTGGCGGGGGAGGAAGT
GGATAGAGGAGGAGGAGTGGGAGAAGGAATGATGGAAGTGCTTGCTGTGG
GGCTCTTCGAGAGTCGTCCTTCTTTGTTGATCAAAATGATGATGGGGTTG
GAAGATGTGCTGGTGTGGGGGGGAGGCGGAGGAGAAGGGGGAGGAGGAGG
AAGGGGGAGGAGACGAGgtggttttggagggggcgtttcgaagaggagga
aggagaaggggaagaggtggaaacagAGACGGCGGAGGAGGAAGAGGAGG
AGGGAGGGGTGGAGGGAGGCCGGGGGGATAATGAGGAGCGGGAGGAGATG
ACGAGACGACATACCGTCGTCCGTACTCTCTACCAGCGGGTCCTCCGCCT
CCTCTCTACTCCTACTTCCCTCCCTCCCTCCTTCGCCCCCTCCCTCCCTC
CCTCCCTCTCTTTGGAGCGGGAGGAAGTGTACCTGGCCTTGTTGGAGGGA
GCAGAACAATTTGAGGAGATGACTCGATTTCTTCTGAGGAGGAGGGAGGG
CGGGCGGGAGGGTAGGAGGGGATGGCAGGAGGCGTTGGGAGTACTGGACC
GTTTGAGGGAGGAAGGGAAAGGAGGGAGGAGGGAGGGCCTCGTGGCGGCT
CGACACGGGGTTTTTGTTTTTCTCCTGGAGGCGGCTCTGAGGGGGGAGGG
AGGGAGGGAGGGAGGGAAGGAGGTGGAGGACGTGATGAGTCGTCGACCTC
CAACATTGCAGGCGCAAGATGTCCGTTTGATTGGTCAATATGTGCTTGAG
GAGGAGGGGGAGATGGGGGAGGGAGGGAGGGGGGGAGAGAGGGAGAGATC
GGTTAGGAGGGCCGTGTCGCTGTGTGTGGAGATTTTGGAAGGGGGGGGGG
GAGTCAGGGGAAGGAAGGGAGGTAGGGAGGGAAACTTGATCGAGGTGCCT
CTGCAAAGCCAGGGAGGGAGAGAGGGAGGGTAG
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protein sequence of NO28G00540.1

>NO28G00540.1-protein ID=NO28G00540.1-protein|Name=NO28G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1241bp
MSRSVPSHSANNVSSSEPPPSAFPPSLPPSAFRLESFASIASGSTNTPHC
CVHGQVVLDGLGTKKVREKAKVDMVCVMGGHMALSLTVRTTGGGAADDDD
TSAIATARSSPTPSSPPPPTTLSSADCGRSAKNTITLLLGFIARGPEEQE
EDEEEEEEEGEEGEEEGGREKKADTSEEEEEYDDEEHVRGVWRRKRRKGK
GKGISSSSSSSSSSSRNSLSVRCQKRFLSWLARGVTGGKGEESDQEKERR
DPPWCAGLVLGGGGGGGAEGGSVGRTVGLQFFKGWKDGGGEGGGEEETRL
LAVQGDGLVRMWALRGGGREGAREGGREGGRLKWVALTSFLLPFLHRVLP
GLMTFSSVSRRLVYVEEMREGGKEGGMARTPALAPPERLRVVSREVIFTS
VDKSPSEIITVGCAVPLFHSLAPSLLSLLPGSIGCWLVTTTHVHYNCYHT
RRFLSLPRQDPAPLSPPPSSSPSLSSSPLHFALHAITEQLFVFSPEGGRG
KQGECEGGRGALGVYSYDSPKRGSCLTYKVLHPSLHPSLPPSLVVTSFAV
HRDLACFLLSSSSSSSSSSSSSFPPSSPPSSSLSPSLAIYHLRTGRLWAL
LPLPRDTDEEDEAEKDQGMEGGKAGRWQGREGGQKGGREGGREGRSGRYS
FWIDAHEGTAIGVWKGEGGNAIYRLYLPSAQEERTFLLSSSSSSSFSFSP
SPPPSLPLPSLSYTYGLSMAHSSGHEALAAYARPPSLPRSLPPSLPLVLR
TALVLGAEEGGEDEEGREEEVAAEVKNKLRDLQSLRREIERLVSPSSLPP
SSSAANENKKETRQQALARVATKMRREAGREGGRGGITTPLLLAVEPLLT
KWLEEREREEEGEGGEESDGERREEAGEGREGGREGGGTLSAMGLAWRLA
TCTTAEDTERLLTFLLAPRLEGGRKGKQLGEGGLQQQLFLFVCALAGEEV
DRGGGVGEGMMEVLAVGLFESRPSLLIKMMMGLEDVLVWGGGGGEGGGGG
RGRRRETAEEEEEEGGVEGGRGDNEEREEMTRRHTVVRTLYQRVLRLLST
PTSLPPSFAPSLPPSLSLEREEVYLALLEGAEQFEEMTRFLLRRREGGRE
GRRGWQEALGVLDRLREEGKGGRREGLVAARHGVFVFLLEAALRGEGGRE
GGKEVEDVMSRRPPTLQAQDVRLIGQYVLEEEGEMGEGGRGGERERSVRR
AVSLCVEILEGGGGVRGRKGGREGNLIEVPLQSQGGREGG*
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Synonyms
Publications