NO28G00460, NO28G00460 (gene) Nannochloropsis oceanica

Overview
NameNO28G00460
Unique NameNO28G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length722
Alignment locationchr28:172882..173603 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:172882..173603 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO28G00460 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 66.2 bits (160), Expect = 1.100e-7
Identity = 72/163 (44.17%), Postives = 88/163 (53.99%), Query Frame = 0 
Query:    8 EARALAGRRGALFGPGKQRGQRAVLLSTLQKGTXXXXXXXXXXEYAIAFQVLGGVLGVASFTAVAVHHIDQSDIRRIEGEQAVEIKRIEXXRXFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHTEDCKPYQAAKEQANKERGGTGGREKEEGTN 171
            +A A+A R   L GPGK R  R    ST   G           ++A  FQ +G VLGVA  TAV V   DQ++I+ IE + A EI +  XX X XXXXXXXXXXXXXXXXX                    +T+D +PYQAA     K+RGGTGG E++E  N
Sbjct:   44 KAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEEN 206
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BLAST of NO28G00460 vs. NCBI_GenBank
Match: EWM20958.1 (hypothetical protein Naga_101659g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 63.9 bits (154), Expect = 5.400e-7
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0 
Query:   26 RGQRAVLLSTLQKGTXXXXXXXXXXEYAIAFQVLGGVLGVASFTAVAVHHIDQSDIRRIEGEQAVEIK 94
            RG R   LST +   XXXXX       ++  Q++ GVLGVASFTAVAVHH+DQ +I R+EGE+A EIK
Sbjct:   36 RGLRGAFLSTHETXXXXXXXKWTAMVISVGLQIVVGVLGVASFTAVAVHHLDQREIMRVEGERAAEIK 103
The following BLAST results are available for this feature:
BLAST of NO28G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20145.11.100e-744.17hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20958.15.400e-755.88hypothetical protein Naga_101659g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00460.1NO28G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00460.1NO28G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00460 ID=NO28G00460|Name=NO28G00460|organism=Nannochloropsis oceanica|type=gene|length=722bp
ATGAGTTGCAGCTTGGCCACGGAGGCAAGAGCATTGGCGGGAAGACGCGG
TGCGCTTTTCGGGCCAGgtaaggaggcttgtgtagatgtaccttggggag
gaggttttgatggtggcggtggagagggacgttcggtgcatgcgactgcc
tacaacctgcgggatgttgatccatttccgtctgcctacctgccctgttt
gggtttcaatctttgcagtatggtcaaggggccgcgccagatgttcacgt
ccaagcacacccatacacgcaaacagGAAAGCAACGCGGGCAGCGGGCGG
TGCTCCTATCAACACTTCAAAAGGGAACGGGCACGGGCAGCGGAGGGGGG
TCTGGGAAGGAGTATGCGATTGCCTTTCAGGTCCTTGGCGGGGTGCTAGG
GGTCGCTAGCTTTACCGCCGTGGCCGTCCATCACATTGACCAGAGCGACA
TCAGGCGTATCGAGGGCGAGCAAGCGGTGGAGATCAAGCGTATCGAGGGC
GAGCGAAGGTTTGCGGAGAATCATTGGAGGGCGGAGATCAAGCGTATTGA
GAGCGAGCGAAAATTGTCGGAGGAGTGTTGGAGGGCGGAGGTGGAGAAGT
ACAAGCATGACTTGCAGTTGAAGCATACCGAAGACTGCAAACCGTACCAG
GCCGCAAAGGAGCAGGCAAACAAAGAGAGGGGAGGAACAGGAGGGCGGGA
AAAAGAAGAGGGGACAAACTAG
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protein sequence of NO28G00460.1

>NO28G00460.1-protein ID=NO28G00460.1-protein|Name=NO28G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MSCSLATEARALAGRRGALFGPGKQRGQRAVLLSTLQKGTGTGSGGGSGK
EYAIAFQVLGGVLGVASFTAVAVHHIDQSDIRRIEGEQAVEIKRIEGERR
FAENHWRAEIKRIESERKLSEECWRAEVEKYKHDLQLKHTEDCKPYQAAK
EQANKERGGTGGREKEEGTN*
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Synonyms
Publications