NO28G00400, NO28G00400 (gene) Nannochloropsis oceanica

Overview
NameNO28G00400
Unique NameNO28G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1869
Alignment locationchr28:153090..154958 -

Link to JBrowse

Properties
Property NameValue
DescriptionCollagen alpha-1 chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:153090..154958 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00400.1NO28G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674095gene_9140Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00400.1NO28G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00400 ID=NO28G00400|Name=NO28G00400|organism=Nannochloropsis oceanica|type=gene|length=1869bp
CGTTCAAAAATTCACCTCACCTACCGCATGTCGTTCCTGGTATCACGAGT
TAAAGATATGCGCCGCATCAGCACACGCTGACCAGTCCCCTTCATGGAAT
CACAACACAAGCATGCGCTGGGTAACTTTGGCGCGCCGTGGTTCCCCTCT
AGCCCTTATTGAGCCCGACTTTCTGTTGCTTCAGCCCCCTCTTCCTCGTG
GTATACGCACAAGTACACCACATGGTTTGCACGTGCCCGTAAACCTGACT
TGGAACCGTGTATATTGACTTTCACGCCTTCTCTCATAGCAGGGCGCACT
TCCCCCTTCCCTCTGCCCCGATACAGTGCAAAGCGACGCCAGCCGTCATC
ATGAGAGTCCTCCTCCCGCCCCTGTTCTTGTGCATGGGCGCGCTTAATGT
CAAGGCGGACGAAGTAATCACGACCCCGCCCCAAGCCCTGCACAGCCACC
TGCTGGGAAACCAAATGAGCGACAGCGAGCCCACCCGCGGCCTCACGATT
ATCGATCAGGAAGCCCAGCGTCGCCTTGACCTTCAGCCCGAGCTGAAGCC
GGACGTGGCTGACGCAAGCAGTCAACTGCTGGACCAAATCGGCCCGCAGG
CGAGTACATCGGCCATACCCCAGAAGCCGGTGTTAGCTTCCTCTAAAGTG
GTCAGTGTACCCGTACCCGGAGACAAATCTATGCCCGCGCAGAACCCCAA
CGTGACTGGACAGCAGGGTCAGCAGCAGCCGAATGGTATGTACGGGCCGC
CGATGCAGCCTGGGATGCAGGGACAGCAGCAGCCGGGTGGAATGTGGGGG
CCGCCGATGCAGCCTGGGATGCAGGGACAGCAGCAGCCGAATGGTATGTG
GGGGCCGCCGATGCAGCCTGGGATGCAGGGACAGCAGCAGCCGAATGGTA
TGTGGGGGCCACCAATGCAGCCTGGGATGCAGGGACAGCAGCAGCCGGGT
GGAATGTGGGGGCCGCCGATGCAGCCTGGGATGCAGGGACAGCAGCAGCC
GAATGGTATCTACGAACAGCCGATGCAGCCTGGGATGCAGGGTGGTCAGC
AGCCGAATGGTATCTACGGGCAGCCGATGCAGCCTGGGATGCAGGGACAG
CAGCAGCCGAATGGTATCTACGGACAGCCGATGCAGCCTGGGATGCAGGG
ACAGCAGCAGCCGGGGATGCCGGGACAGCAGCAGCCCAATGGTATCTACG
GACAGCCGATGCAGCCTGGGATGCAGGGACAGCAGCCGAATGGTATCTAC
GGACGGCCGATCCAACCCGGGATGCAGGGACAGCAGCAGCCGGGGATGCC
GGGACAGCAGCAGCCCAATGGTATCTACGGACAGCCGATGCAGCCTGGGA
TGCAGGGTGGTCAGCAGCCGAATGGTATCTACGGGCAGCCGATGCAGCCG
GGTATGCCGGGACAGCAGCAGCCCGGTGGTATCTACGGACAGCCGATGCA
GCCTGGGATGCAGCAGGCGGGCATGAACTCACAGCAGAAACCTGCCACTA
AGAAGCAAGCAGACACGTCGAAACAAGCTGAGAATCACGAGAGAAATGGC
AAACGGAGCTTGCGTGCATAAAGAGAGGGCAAGAGCAGAAGAAAGGAAGA
AAGAGCAAGAAAATAAGTATGTTGATGAATTGGGGACTGCCCCATAAAGG
AAGTGCATATATCCAAAAGGGCCTATGGGTGAAAATAAGAAGTGTTTGAC
AGGAGTAAATAGTCATAAATTTGAAGAAACAATTCTTGTTATTGTGAGTG
TGAAGGAAAGCATGTAGTTACATTTTTGTTGCTAGAGCTCACTTCGAATG
AAAAATCCGTAATGCCAATCATATACAACGATCTGGAGGGCTGGCAATGT
CGTCAAATGAACCAGTAGG
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protein sequence of NO28G00400.1

>NO28G00400.1-protein ID=NO28G00400.1-protein|Name=NO28G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MRVLLPPLFLCMGALNVKADEVITTPPQALHSHLLGNQMSDSEPTRGLTI
IDQEAQRRLDLQPELKPDVADASSQLLDQIGPQASTSAIPQKPVLASSKV
VSVPVPGDKSMPAQNPNVTGQQGQQQPNGMYGPPMQPGMQGQQQPGGMWG
PPMQPGMQGQQQPNGMWGPPMQPGMQGQQQPNGMWGPPMQPGMQGQQQPG
GMWGPPMQPGMQGQQQPNGIYEQPMQPGMQGGQQPNGIYGQPMQPGMQGQ
QQPNGIYGQPMQPGMQGQQQPGMPGQQQPNGIYGQPMQPGMQGQQPNGIY
GRPIQPGMQGQQQPGMPGQQQPNGIYGQPMQPGMQGGQQPNGIYGQPMQP
GMPGQQQPGGIYGQPMQPGMQQAGMNSQQKPATKKQADTSKQAENHERNG
KRSLRA*
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Synonyms
Publications