NO28G00350, NO28G00350 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G00350 vs. NCBI_GenBank
Match: EWM20962.1 (trna-specific adenosine deaminase-like protein 3 [Nannochloropsis gaditana]) HSP 1 Score: 233.0 bits (593), Expect = 2.000e-57 Identity = 212/483 (43.89%), Postives = 244/483 (50.52%), Query Frame = 0 Query: 1 MEEIFAPERPDEDPVTVQVLVSPIAPHMTNKALKTLHTLLPTPDAKLGHLKRVRKDPSSSSLLLLLSTPSLYHALSPSLRFTLEKDLDLKIREARVPRRPCKSREEQQELSRLWPMTYQGIGEVVEKEKAALTSHEIETAEKHLRHAFVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGVKGGRIRRERGRMREGRGAVFVNPENGIVIATAVSSTDTPTAAVSGKMEDKGKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFQLPPSHP-SSSTDGFSTIPPSRLPSLPSHPLHHVVMQCITLVARLVAGRQDKERGGXXXXXXXXXXXXXXXXXXDKDNVSGSVALLLSRSPQPGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCDQYLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFRW 483 MEEIF+ E DE+P TV+VLVSPIAPH+ N+ALK LH+LLPTPDA+LGHLKRVRKDP SSSLLLLLSTP+ YHAL+PSLR LE+DLDL + VPRRPCK+R EQ+ + LWP+TYQGI EVVEKEKAAL R R+G+ G + + D V+ + G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G S + SR S S + + + + R+ K G DK+ S AL P DQYLCTGLDAY+THEPCVMCAMALVHSR+RRVFY +P EEGAL SHF VHALP LNHRYR FRW Sbjct: 12 MEEIFSLETADEEPTTVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSLLLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAAL-----------------------------------------------------------------------DRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELAGGAPGLSVLSTSRETS-SSLKIDSGLGLXLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKE-ASWRGAL--------------------------------------------PEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRW 377
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_005853743.1 (trna-specific adenosine deaminase subunit tad3, partial [Nannochloropsis gaditana CCMP526] >EKU22617.1 trna-specific adenosine deaminase subunit tad3, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 104.0 bits (258), Expect = 1.400e-18 Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0 Query: 416 PCDQYLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALP 472 P DQYLCTGLDAY+THEPCVMCAMALVHSR+RRVFY +P EEGAL SHF VHALP Sbjct: 80 PEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALP 135
BLAST of NO28G00350 vs. NCBI_GenBank
Match: CBJ27842.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 103.2 bits (256), Expect = 2.400e-18 Identity = 119/480 (24.79%), Postives = 163/480 (33.96%), Query Frame = 0 Query: 17 VQVLVSPIAPHMTNKALKTLHTLLPTPDAKLGHLKRVR--KDPSSSSLL-LLLSTPSLYHALSPSLRFTLEKDLDLKIREARVPRRPCKSREEQQELSRLWPMTY-QGIGEVVEKEKAALTSHEIETAEKHLRHAFVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGVKGGRIRRERGRMREGRGAVFVNP------ENGIVIATAVSSTDTPTAAVSGKMEDKGKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFQLPPSHPSSSTDGFSTIPPSRLPSLPSHPLHHVVMQCITLVARLVAGRQDKERGGXXXXXXXXXXXXXXXXXXDKDNVSGSVALLLSRSPQPGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCDQYLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFRWHCND 487 + VLVS I P ++ +K L LLP AKL HLKR+R + P + LL +LLS P +YHAL + R + + L+ VP+ ++R + WPM + E + + + A +R A V R++ R GAV V+P G V+ATA K+ D+ P+S D HPLHH VM C+ V R +A +E+ ++D+ G + + G+G +QYLCTG D Y+T EPC+MCAMALVHSRVRRV YG+ E G LGS +H L LNH YR F C D Sbjct: 19 LDVLVSAIKPRQASQVVKDLSELLPLERAKLNHLKRIRSSQHPETGRLLQVLLSPPDMYHALDEAKRKEIVERYGLEPTVHAVPKLEPRTRAQFLSGGSAWPMIFHHSTSEEARRAARVIPEQDALDAIGFMRDALV----------------------------------------------DAETGRQQNGGRPTVGAVLVDPLGGCGGRRGRVVATASRERQ--------KVRDE------------------------------------------------EPASMRD---------------HPLHHAVMLCVQGVGRALAAGSRQEK---------------VARKQEEDSAGGKLG-----KEREGKGSESLCSDADPPGGVVEVLSP---------------EQYLCTGFDLYVTREPCLMCAMALVHSRVRRVIYGVRDTERGCLGSVTMLHTLTSLNHNYRVFEGVCAD 346
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_020939870.1 (probable inactive tRNA-specific adenosine deaminase-like protein 3 [Sus scrofa]) HSP 1 Score: 100.9 bits (250), Expect = 1.200e-17 Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 0 Query: 420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482 Y+CTG D Y+T EPC MCAMALVHSRVRRVFYG PS +GALG+HF +HA P LNHR++AFR Sbjct: 277 YVCTGYDLYVTREPCAMCAMALVHSRVRRVFYGAPS-PDGALGTHFRIHARPDLNHRFQAFR 337
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_014949005.1 (PREDICTED: LOW QUALITY PROTEIN: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Ovis aries musimon] >XP_004023504.3 PREDICTED: LOW QUALITY PROTEIN: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Ovis aries]) HSP 1 Score: 100.5 bits (249), Expect = 1.600e-17 Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 0 Query: 420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482 Y+CTG D Y+T EPC MCAMALVHSRVRRVFYG PS +GALG+HF +HA P LNHR++AFR Sbjct: 287 YVCTGYDLYITREPCTMCAMALVHSRVRRVFYGAPS-PDGALGTHFRLHARPDLNHRFQAFR 347
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_015978078.1 (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1 [Rousettus aegyptiacus]) HSP 1 Score: 99.4 bits (246), Expect = 3.500e-17 Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 0 Query: 420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482 Y+CTG D Y+T EPCVMCAMALVHSRVRRVFYG PS +GALGS F VHA P LNHR++ FR Sbjct: 381 YVCTGYDLYVTREPCVMCAMALVHSRVRRVFYGAPS-PDGALGSRFRVHARPDLNHRFQVFR 441
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_015978088.1 (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X2 [Rousettus aegyptiacus]) HSP 1 Score: 99.4 bits (246), Expect = 3.500e-17 Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 0 Query: 420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482 Y+CTG D Y+T EPCVMCAMALVHSRVRRVFYG PS +GALGS F VHA P LNHR++ FR Sbjct: 282 YVCTGYDLYVTREPCVMCAMALVHSRVRRVFYGAPS-PDGALGSRFRVHARPDLNHRFQVFR 342
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_015359090.1 (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Marmota marmota marmota]) HSP 1 Score: 98.6 bits (244), Expect = 5.900e-17 Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 0 Query: 420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482 Y+CTG D Y+T EPCVMCAMALVHSR++RVFYG PS +GALG+ F +HA PGLNHR++ FR Sbjct: 277 YVCTGCDLYVTREPCVMCAMALVHSRIQRVFYGAPS-PDGALGTRFRIHAQPGLNHRFQVFR 337
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_023397017.1 (probable inactive tRNA-specific adenosine deaminase-like protein 3 [Loxodonta africana] >XP_023397018.1 probable inactive tRNA-specific adenosine deaminase-like protein 3 [Loxodonta africana]) HSP 1 Score: 98.6 bits (244), Expect = 5.900e-17 Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 0 Query: 420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482 Y+CTG D Y+T EPCVMCAMALVH+R+RRVFYG PS +GALG+HF +HA P LNHR++ FR Sbjct: 277 YVCTGYDLYVTREPCVMCAMALVHARIRRVFYGAPS-PDGALGTHFRLHARPDLNHRFQVFR 337
BLAST of NO28G00350 vs. NCBI_GenBank
Match: EFB22859.1 (hypothetical protein PANDA_015525, partial [Ailuropoda melanoleuca]) HSP 1 Score: 97.8 bits (242), Expect = 1.000e-16 Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0 Query: 420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482 Y+CTG D Y+THEPC MCAMALVHSRV+RVFYG PS +GALG+ F +HA P LNHR++ FR Sbjct: 281 YVCTGYDLYVTHEPCAMCAMALVHSRVQRVFYGAPS-PDGALGTRFRIHARPDLNHRFQVFR 341 The following BLAST results are available for this feature:
BLAST of NO28G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G00350 ID=NO28G00350|Name=NO28G00350|organism=Nannochloropsis oceanica|type=gene|length=1927bpback to top protein sequence of NO28G00350.1 >NO28G00350.1-protein ID=NO28G00350.1-protein|Name=NO28G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bpback to top Synonyms
Publications
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