NO28G00350, NO28G00350 (gene) Nannochloropsis oceanica

Overview
NameNO28G00350
Unique NameNO28G00350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1927
Alignment locationchr28:131319..133245 -

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Properties
Property NameValue
DescriptionTrna-specific adenosine deaminase-like protein 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:131319..133245 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR002125CMP_dCMP_Zn-bd
Homology
BLAST of NO28G00350 vs. NCBI_GenBank
Match: EWM20962.1 (trna-specific adenosine deaminase-like protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 2.000e-57
Identity = 212/483 (43.89%), Postives = 244/483 (50.52%), Query Frame = 0
Query:    1 MEEIFAPERPDEDPVTVQVLVSPIAPHMTNKALKTLHTLLPTPDAKLGHLKRVRKDPSSSSLLLLLSTPSLYHALSPSLRFTLEKDLDLKIREARVPRRPCKSREEQQELSRLWPMTYQGIGEVVEKEKAALTSHEIETAEKHLRHAFVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGVKGGRIRRERGRMREGRGAVFVNPENGIVIATAVSSTDTPTAAVSGKMEDKGKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFQLPPSHP-SSSTDGFSTIPPSRLPSLPSHPLHHVVMQCITLVARLVAGRQDKERGGXXXXXXXXXXXXXXXXXXDKDNVSGSVALLLSRSPQPGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCDQYLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFRW 483
            MEEIF+ E  DE+P TV+VLVSPIAPH+ N+ALK LH+LLPTPDA+LGHLKRVRKDP SSSLLLLLSTP+ YHAL+PSLR  LE+DLDL +    VPRRPCK+R EQ+  + LWP+TYQGI EVVEKEKAAL                                                                        R R+G+         G  +   +   D     V+   +  G  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          +    G S +  SR  S  S  +   +   +     +   R+ K  G                   DK+  S   AL                                            P DQYLCTGLDAY+THEPCVMCAMALVHSR+RRVFY +P  EEGAL SHF VHALP LNHRYR FRW
Sbjct:   12 MEEIFSLETADEEPTTVEVLVSPIAPHLANRALKRLHSLLPTPDAQLGHLKRVRKDPDSSSLLLLLSTPARYHALTPSLRLALEQDLDLHVEVREVPRRPCKTRHEQEIATGLWPLTYQGIEEVVEKEKAAL-----------------------------------------------------------------------DRDRKGKEVFADCLGFGWRVHVVMRCVDRVADLVASAEKGDGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELAGGAPGLSVLSTSRETS-SSLKIDSGLGLXLGFNVLIAGERRGKPSGSVCFQGVHGRNLEEAQAREDKE-ASWRGAL--------------------------------------------PEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALPSLNHRYRVFRW 377          
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_005853743.1 (trna-specific adenosine deaminase subunit tad3, partial [Nannochloropsis gaditana CCMP526] >EKU22617.1 trna-specific adenosine deaminase subunit tad3, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 104.0 bits (258), Expect = 1.400e-18
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0
Query:  416 PCDQYLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALP 472
            P DQYLCTGLDAY+THEPCVMCAMALVHSR+RRVFY +P  EEGAL SHF VHALP
Sbjct:   80 PEDQYLCTGLDAYMTHEPCVMCAMALVHSRIRRVFYCLPCPEEGALESHFGVHALP 135          
BLAST of NO28G00350 vs. NCBI_GenBank
Match: CBJ27842.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 103.2 bits (256), Expect = 2.400e-18
Identity = 119/480 (24.79%), Postives = 163/480 (33.96%), Query Frame = 0
Query:   17 VQVLVSPIAPHMTNKALKTLHTLLPTPDAKLGHLKRVR--KDPSSSSLL-LLLSTPSLYHALSPSLRFTLEKDLDLKIREARVPRRPCKSREEQQELSRLWPMTY-QGIGEVVEKEKAALTSHEIETAEKHLRHAFVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGVKGGRIRRERGRMREGRGAVFVNP------ENGIVIATAVSSTDTPTAAVSGKMEDKGKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFQLPPSHPSSSTDGFSTIPPSRLPSLPSHPLHHVVMQCITLVARLVAGRQDKERGGXXXXXXXXXXXXXXXXXXDKDNVSGSVALLLSRSPQPGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCDQYLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFRWHCND 487
            + VLVS I P   ++ +K L  LLP   AKL HLKR+R  + P +  LL +LLS P +YHAL  + R  + +   L+     VP+   ++R +       WPM +     E   +    +   +   A   +R A V                                                   R++   R   GAV V+P        G V+ATA             K+ D+                                                 P+S  D               HPLHH VM C+  V R +A    +E+                    ++D+  G +        + G+G                                   +QYLCTG D Y+T EPC+MCAMALVHSRVRRV YG+   E G LGS   +H L  LNH YR F   C D
Sbjct:   19 LDVLVSAIKPRQASQVVKDLSELLPLERAKLNHLKRIRSSQHPETGRLLQVLLSPPDMYHALDEAKRKEIVERYGLEPTVHAVPKLEPRTRAQFLSGGSAWPMIFHHSTSEEARRAARVIPEQDALDAIGFMRDALV----------------------------------------------DAETGRQQNGGRPTVGAVLVDPLGGCGGRRGRVVATASRERQ--------KVRDE------------------------------------------------EPASMRD---------------HPLHHAVMLCVQGVGRALAAGSRQEK---------------VARKQEEDSAGGKLG-----KEREGKGSESLCSDADPPGGVVEVLSP---------------EQYLCTGFDLYVTREPCLMCAMALVHSRVRRVIYGVRDTERGCLGSVTMLHTLTSLNHNYRVFEGVCAD 346          
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_020939870.1 (probable inactive tRNA-specific adenosine deaminase-like protein 3 [Sus scrofa])

HSP 1 Score: 100.9 bits (250), Expect = 1.200e-17
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 0
Query:  420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482
            Y+CTG D Y+T EPC MCAMALVHSRVRRVFYG PS  +GALG+HF +HA P LNHR++AFR
Sbjct:  277 YVCTGYDLYVTREPCAMCAMALVHSRVRRVFYGAPS-PDGALGTHFRIHARPDLNHRFQAFR 337          
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_014949005.1 (PREDICTED: LOW QUALITY PROTEIN: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Ovis aries musimon] >XP_004023504.3 PREDICTED: LOW QUALITY PROTEIN: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Ovis aries])

HSP 1 Score: 100.5 bits (249), Expect = 1.600e-17
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 0
Query:  420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482
            Y+CTG D Y+T EPC MCAMALVHSRVRRVFYG PS  +GALG+HF +HA P LNHR++AFR
Sbjct:  287 YVCTGYDLYITREPCTMCAMALVHSRVRRVFYGAPS-PDGALGTHFRLHARPDLNHRFQAFR 347          
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_015978078.1 (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1 [Rousettus aegyptiacus])

HSP 1 Score: 99.4 bits (246), Expect = 3.500e-17
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 0
Query:  420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482
            Y+CTG D Y+T EPCVMCAMALVHSRVRRVFYG PS  +GALGS F VHA P LNHR++ FR
Sbjct:  381 YVCTGYDLYVTREPCVMCAMALVHSRVRRVFYGAPS-PDGALGSRFRVHARPDLNHRFQVFR 441          
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_015978088.1 (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X2 [Rousettus aegyptiacus])

HSP 1 Score: 99.4 bits (246), Expect = 3.500e-17
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 0
Query:  420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482
            Y+CTG D Y+T EPCVMCAMALVHSRVRRVFYG PS  +GALGS F VHA P LNHR++ FR
Sbjct:  282 YVCTGYDLYVTREPCVMCAMALVHSRVRRVFYGAPS-PDGALGSRFRVHARPDLNHRFQVFR 342          
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_015359090.1 (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 [Marmota marmota marmota])

HSP 1 Score: 98.6 bits (244), Expect = 5.900e-17
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 0
Query:  420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482
            Y+CTG D Y+T EPCVMCAMALVHSR++RVFYG PS  +GALG+ F +HA PGLNHR++ FR
Sbjct:  277 YVCTGCDLYVTREPCVMCAMALVHSRIQRVFYGAPS-PDGALGTRFRIHAQPGLNHRFQVFR 337          
BLAST of NO28G00350 vs. NCBI_GenBank
Match: XP_023397017.1 (probable inactive tRNA-specific adenosine deaminase-like protein 3 [Loxodonta africana] >XP_023397018.1 probable inactive tRNA-specific adenosine deaminase-like protein 3 [Loxodonta africana])

HSP 1 Score: 98.6 bits (244), Expect = 5.900e-17
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 0
Query:  420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482
            Y+CTG D Y+T EPCVMCAMALVH+R+RRVFYG PS  +GALG+HF +HA P LNHR++ FR
Sbjct:  277 YVCTGYDLYVTREPCVMCAMALVHARIRRVFYGAPS-PDGALGTHFRLHARPDLNHRFQVFR 337          
BLAST of NO28G00350 vs. NCBI_GenBank
Match: EFB22859.1 (hypothetical protein PANDA_015525, partial [Ailuropoda melanoleuca])

HSP 1 Score: 97.8 bits (242), Expect = 1.000e-16
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0
Query:  420 YLCTGLDAYLTHEPCVMCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFR 482
            Y+CTG D Y+THEPC MCAMALVHSRV+RVFYG PS  +GALG+ F +HA P LNHR++ FR
Sbjct:  281 YVCTGYDLYVTHEPCAMCAMALVHSRVQRVFYGAPS-PDGALGTRFRIHARPDLNHRFQVFR 341          
The following BLAST results are available for this feature:
BLAST of NO28G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20962.12.000e-5743.89trna-specific adenosine deaminase-like protein 3 [... [more]
XP_005853743.11.400e-1883.93trna-specific adenosine deaminase subunit tad3, pa... [more]
CBJ27842.12.400e-1824.79conserved unknown protein [Ectocarpus siliculosus][more]
XP_020939870.11.200e-1772.58probable inactive tRNA-specific adenosine deaminas... [more]
XP_014949005.11.600e-1772.58PREDICTED: LOW QUALITY PROTEIN: probable inactive ... [more]
XP_015978078.13.500e-1774.19PREDICTED: probable inactive tRNA-specific adenosi... [more]
XP_015978088.13.500e-1774.19PREDICTED: probable inactive tRNA-specific adenosi... [more]
XP_015359090.15.900e-1769.35PREDICTED: probable inactive tRNA-specific adenosi... [more]
XP_023397017.15.900e-1769.35probable inactive tRNA-specific adenosine deaminas... [more]
EFB22859.11.000e-1669.35hypothetical protein PANDA_015525, partial [Ailuro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00350.1NO28G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606617gene_9135Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100781g2gene9463Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00350.1NO28G00350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00350 ID=NO28G00350|Name=NO28G00350|organism=Nannochloropsis oceanica|type=gene|length=1927bp
ATGGAAGAGATATTTGCTCCTGAGAGACCTGACGAGgtgagtcgcctcta
caacctcccatcctcctcctcccttccctccttcatcccttcacgcatac
atgtttacacgcatatgtgtttagGATCCTGTTACTGTCCAAGTGCTTGT
CTCGCCCATAGCGCCACACATGACAAACAAGGCCTTGAAGACACTGCACA
CCCTCCTTCCCACACCCGATGCCAAGgtacgtatatactcacatgcgctt
tcctctccaccagcccccccgtttgcgtttctgttgtcgttcattgtctt
tacttttcgcaaaatgtcttttctggagcgtgtgtccttccccctggcac
ccatccatcaacacccttccctctttccctctctccctccctcactctcc
acattcccatagCTCGGGCACCTGAAACGCGTCCGCAAAGATCCTTCCTC
CTCGTCCCTCCTCCTCCTGCTCTCCACTCCATCCCTTTACCATGCCCTTT
CCCCCTCTCTCCGCTTCACTCTCGAGAAAGACTTAGACTTAAAAATACGA
GAGGCCCGAGTCCCGAGGCGACCTTGTAAATCGAGAGAGGAACAACAAGA
ATTATCGCGATTATGGCCGATGACTTACCAAGGGATAGGCGAAGTAGTCG
AGAAGGAGAAAGCGGCTTTGACGAGgtacggaaggagaaggagagagaaa
catccattcccattttcagtgggaatgcatcagtcactccgcttcccttt
cgctctgccctcccccactctctctctccctccctcctccccttgattac
acagCCACGAAATTGAGACAGCAGAAAAGCACCTTCGCCATGCATTTGTC
CTTGCTGCCGCTGTTGCTAAGGAGGAGGAAGAGGACAAGGAGGAGGAGGA
GGATGAAGACGAAGAAGAGGAGAAGGAAGACGACCAGACACTAAATTACA
GTAGCAGCAGTATGAGGAGGAAAAGTAAAGGAGTGAAAGGGGGAAGGATA
AGAAGGGAGAGGGGAAGGATGAGAGAGGGAAGAGGGGCAGTATTCGTAAA
TCCCGAGAATGGCATTGTGATAGCAACAGCCGTTTCGTCAACTGACACTC
CTACAGCAGCGGTAAGTGGGAAGATGGAGGATAAGGGGAAGGAGGGGAAC
GAGGAGGAGGAGGGTACCAGTGATCAGAATTGTTGCCACTGCCAGCAGCT
GCAGGAGCCGCAGCAGCAGGAGCAGGAGCAACGGCAGCAACGGCAACAGA
AGCACAACGGTTTCCAGTTACCTCCTTCTCATCCAAGCTCCTCGACTGAT
GGTTTTTCTACCATCCCTCCCTCCCGCCTTCCCTCTCTTCCTTCTCACCC
CCTTCACCATGTCGTCATGCAATGCATCACGCTTGTGGCTCGTCTTGTCG
CCGGGCGCCAAGACAAGGAGAGAGGGGGGGAGGAACGCGGGGAGGAAAGT
GTAGGAGGGAGGGGTACCGGGCATGAGGGCGAGGATAAGGATAATGTCAG
TGGATCGGTAGCATTGCTCTTATCACGCTCCCCGCAACCAGGAGAAGGAG
CAGCGTCAAAAGCAGCAACCACAACAACACCAGCAGCAACAATAATACCA
ACACCAGCAGCAGCAGCAGCAACAGTGCCAGCAGCCGCTCTCGCCTTGCC
TTGTGACCAGTACCTCTGCACGGGCCTCGATGCCTACCTAACTCACGAAC
CCTGTGTCATGTGCGCCATGGCTTTGGTGCATTCCCGGGTGCGTCGTGTC
TTTTATGGGATCCCGTCGCTGGAGGAAGGCGCATTGGGCAGTCACTTTGC
CGTGCATGCCTTGCCGGGCTTGAACCATCGGTATCGGGCTTTTCGCTGGC
ATTGCAATGATATGAGCAGCACCAACAGCAGCAGCAGCAGCAGCAGCAGT
GGTTGTTGTAGCTGTAGTAGTACGTGA
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protein sequence of NO28G00350.1

>NO28G00350.1-protein ID=NO28G00350.1-protein|Name=NO28G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MEEIFAPERPDEDPVTVQVLVSPIAPHMTNKALKTLHTLLPTPDAKLGHL
KRVRKDPSSSSLLLLLSTPSLYHALSPSLRFTLEKDLDLKIREARVPRRP
CKSREEQQELSRLWPMTYQGIGEVVEKEKAALTSHEIETAEKHLRHAFVL
AAAVAKEEEEDKEEEEDEDEEEEKEDDQTLNYSSSSMRRKSKGVKGGRIR
RERGRMREGRGAVFVNPENGIVIATAVSSTDTPTAAVSGKMEDKGKEGNE
EEEGTSDQNCCHCQQLQEPQQQEQEQRQQRQQKHNGFQLPPSHPSSSTDG
FSTIPPSRLPSLPSHPLHHVVMQCITLVARLVAGRQDKERGGEERGEESV
GGRGTGHEGEDKDNVSGSVALLLSRSPQPGEGAASKAATTTTPAATIIPT
PAAAAATVPAAALALPCDQYLCTGLDAYLTHEPCVMCAMALVHSRVRRVF
YGIPSLEEGALGSHFAVHALPGLNHRYRAFRWHCNDMSSTNSSSSSSSSG
CCSCSST*
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Synonyms
Publications