NO28G00340, NO28G00340 (gene) Nannochloropsis oceanica

Overview
NameNO28G00340
Unique NameNO28G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length673
Alignment locationchr28:129873..130545 -

Link to JBrowse

Properties
Property NameValue
DescriptionSuccinate dehydrogenase assembly factor 3, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:129873..130545 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR008381ACN9
Vocabulary: Biological Process
TermDefinition
GO:0034553mitochondrial respiratory chain complex II assembly
Homology
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: CBN78948.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.6 bits (200), Expect = 1.700e-12
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 0 
Query:    7 QLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDVLASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKE 96
            +LY+ ILRQHR  LPP  R+LGD YV++EF+AH+++  D +A F   W +YL  L+ Q GQ  VG  L+  +V  L+ EQ +QL +LK+
Sbjct:   13 RLYKDILRQHRFALPPKHRELGDRYVRSEFKAHKEATGDQVAQFMHAWRSYLEQLRNQGGQ--VGRSLSAADVSHLNDEQRKQLVRLKQ 99
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: XP_005833766.1 (hypothetical protein GUITHDRAFT_138126 [Guillardia theta CCMP2712] >EKX46786.1 hypothetical protein GUITHDRAFT_138126 [Guillardia theta CCMP2712])

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-11
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 0 
Query:    6 IQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDVLASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAKA 101
            I LYR ILR H++ LP  +++LGD YV++EF+ H+K++   +  F  +W  YL  ++AQ      G  L +EE   L+ EQ + L +L+EEA +A
Sbjct:   11 ISLYRKILRLHKRVLPNEMKELGDSYVRSEFKQHKKAKVGEVKVFARQWKEYLYTIEAQAASGTFGRNLREEEAAHLNQEQKENLKRLEEEAKRA 105
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: KPA45674.1 (acetate non-utilizing protein mitochondrial [Fusarium langsethiae])

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-11
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 0 
Query:    2 LLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDV-LASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAKAAADKGKATP 110
            LL  I LYR +LR HR+ LPP +R LGDEY+KAEFRAHRK      L  F  EW  Y   +   +G   VG  L ++++ ++S EQ+QQL +L +       + G+  P
Sbjct:   25 LLPPIPLYRRLLRAHRKHLPPEMRILGDEYIKAEFRAHRKVDNPAHLIGFLTEWQMYAQKI---EGDQWVGDKLDEQKLSKMSDEQIQQLYELMQAIQNRGKEGGEQEP 130
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: OIW35317.1 (ACN9-domain-containing protein [Coniochaeta ligniaria NRRL 30616])

HSP 1 Score: 78.2 bits (191), Expect = 1.900e-11
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 0 
Query:    2 LLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDV-LASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAKAAADK 105
            LL  I LYR +LR HR+ LPP +R LGDEYVKAEFRAHR     V L  F  EW  Y   +   +G   VG  L   ++ ++S EQ+ QL +L +   K   D+
Sbjct:   24 LLPPIPLYRRLLRAHRKHLPPEMRLLGDEYVKAEFRAHRDVENPVHLVGFLTEWQLYAQKI---EGDAWVGEKLDQSKIEKMSDEQLAQLYELMKTIQKRGEDE 124
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: XP_009262916.1 (hypothetical protein FPSE_11524 [Fusarium pseudograminearum CS3096] >EKJ68280.1 hypothetical protein FPSE_11524 [Fusarium pseudograminearum CS3096] >PTD11680.1 Succinate dehydrogenase assembly factor 3, mitochondrial [Fusarium culmorum])

HSP 1 Score: 77.0 bits (188), Expect = 4.100e-11
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 0 
Query:    2 LLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDV-LASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAKAAADKGK 107
            LL  I LYR +LR HR+ LPP +R LGDEY+KAEFRAHRK      L  F  EW  Y   +   +G   VG  L ++++ ++S EQ+QQL +L +       + G+
Sbjct:   25 LLPPIPLYRRLLRAHRKHLPPEMRILGDEYIKAEFRAHRKVDNPAHLIGFLTEWQMYAQKI---EGDQWVGDKLDEQKLSKMSDEQIQQLYELMQAIQNRGKEGGE 127
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: XP_011317147.1 (acetate non-utilizing protein 9 [Fusarium graminearum PH-1] >Q4IN52.1 RecName: Full=Succinate dehydrogenase assembly factor 3, mitochondrial; Short=SDH assembly factor 3; Short=SDHAF3; Flags: Precursor >ESU06662.1 acetate non-utilizing protein 9 [Fusarium graminearum PH-1] >EYB22504.1 hypothetical protein FG05_01356 [Fusarium graminearum] >CEF73476.1 unnamed protein product [Fusarium graminearum])

HSP 1 Score: 76.6 bits (187), Expect = 5.400e-11
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 0 
Query:    2 LLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDV-LASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAKAAADKGK 107
            LL  I LYR +LR HR+ LPP +R LGDEY+KAEFRAHRK      L  F  EW  Y   +   +G   VG  L ++++ ++S EQ+QQL +L +       + G+
Sbjct:   25 LLPPIPLYRRLLRAHRKHLPPDMRILGDEYIKAEFRAHRKVDNPAHLIGFLTEWQMYAQKI---EGDQWVGDKLDEQKLSKMSDEQIQQLYELMQAIQNRGKEGGE 127
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: PCD22820.1 (acetate non-utilizing protein 9 [Fusarium graminearum])

HSP 1 Score: 76.6 bits (187), Expect = 5.400e-11
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 0 
Query:    2 LLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRK-SRTDVLASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAKAAADKGK 107
            LL  I LYR +LR HR+ LPP +R LGDEY+KAEFRAHRK      L  F  EW  Y   +   +G   VG  L ++++ ++S EQ+QQL +L +       + G+
Sbjct:   25 LLPPIPLYRRLLRAHRKHLPPDMRILGDEYIKAEFRAHRKVDNPTHLIGFLTEWQMYAQKI---EGDQWVGDKLDEQKLSKMSDEQIQQLYELMQAIQNRGKEGGE 127
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: XP_006963043.1 (predicted protein [Trichoderma reesei QM6a] >EGR50783.1 predicted protein [Trichoderma reesei QM6a] >ETS01667.1 ACN9-domain-containing protein [Trichoderma reesei RUT C-30] >OTA02762.1 acetate non-utilizing protein 9, putative [Trichoderma parareesei])

HSP 1 Score: 76.3 bits (186), Expect = 7.100e-11
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 0 
Query:    2 LLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDV-LASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAK 100
            LL  I LYR +LR HR+ LPP +R LGDEYVKAEFRAHR       L  F  EW  Y   +   +G+  VG  +   +++++S EQ+QQL +L +   K
Sbjct:   26 LLPPIPLYRRLLRAHRKHLPPDMRVLGDEYVKAEFRAHRNVDNPAHLIGFLTEWQMYAQQI---EGESWVGEKIDQSKLQKMSDEQIQQLYELMQAIQK 121
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: XP_003659275.1 (hypothetical protein MYCTH_2296086 [Thermothelomyces thermophila ATCC 42464] >AEO54030.1 hypothetical protein MYCTH_2296086 [Thermothelomyces thermophila ATCC 42464])

HSP 1 Score: 76.3 bits (186), Expect = 7.100e-11
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 0 
Query:    2 LLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDV-LASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAKAAADKGK 107
            LL  I LYR +LR HR+ LPP +R LGDEYVKAEFRAHR     V L  F  EW  Y   +   +G    G  L   ++ ++S EQ+ QL +L +   K   ++G+
Sbjct:   25 LLPPIYLYRRLLRAHRKHLPPEMRLLGDEYVKAEFRAHRNVENPVHLIGFLSEWQLYAQKI---EGDAWKGEKLDQGKIEKMSDEQLGQLYELMKAIQKRGTEEGE 127
[Close]
BLAST of NO28G00340 vs. NCBI_GenBank
Match: XP_024747397.1 (ACN9-domain-containing protein [Trichoderma citrinoviride] >PTB64077.1 ACN9-domain-containing protein [Trichoderma citrinoviride])

HSP 1 Score: 76.3 bits (186), Expect = 7.100e-11
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 0 
Query:    2 LLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDV-LASFQEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAK 100
            LL  I LYR +LR HR+ LPP +R LGDEYVKAEFRAHR       L  F  EW  Y   +   +G+  VG  +   +++++S EQ+QQL +L +   K
Sbjct:   27 LLPPIPLYRRLLRAHRKYLPPDMRVLGDEYVKAEFRAHRNVDNPAHLIGFLSEWQMYAQQI---EGESWVGEKIDQSKLQKMSDEQIQQLYELMQAIKK 122
The following BLAST results are available for this feature:
BLAST of NO28G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN78948.11.700e-1247.19conserved unknown protein [Ectocarpus siliculosus][more]
XP_005833766.11.100e-1140.00hypothetical protein GUITHDRAFT_138126 [Guillardia... [more]
KPA45674.11.100e-1142.20acetate non-utilizing protein mitochondrial [Fusar... [more]
OIW35317.11.900e-1144.23ACN9-domain-containing protein [Coniochaeta lignia... [more]
XP_009262916.14.100e-1142.45hypothetical protein FPSE_11524 [Fusarium pseudogr... [more]
XP_011317147.15.400e-1142.45acetate non-utilizing protein 9 [Fusarium graminea... [more]
PCD22820.15.400e-1142.45acetate non-utilizing protein 9 [Fusarium graminea... [more]
XP_006963043.17.100e-1144.44predicted protein [Trichoderma reesei QM6a] >EGR50... [more]
XP_003659275.17.100e-1142.45hypothetical protein MYCTH_2296086 [Thermothelomyc... [more]
XP_024747397.17.100e-1144.44ACN9-domain-containing protein [Trichoderma citrin... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00340.1NO28G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606613gene_9134Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00340.1NO28G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00340 ID=NO28G00340|Name=NO28G00340|organism=Nannochloropsis oceanica|type=gene|length=673bp
ATGCTCCTTCGAGGCATCCAGCTTTACAGGGCCATTTTGAGACAGCACCG
CCAAGGTCTGCCTCCACATTTGCGGAAGCTTGGGGACGAGTATGTGAAgt
aagtgccgcaaaggagaggaggtggaaggaggataagggttggtgatgat
gcgaggacctgctttcagctcaacccctctactgcgttcctcccgccttc
cctccttccgcccctttagAGCCGAGTTTCGCGCTCACCGCAAATCCAGG
ACTGATGTCCTGGCCTCTTTTCAAGAAGAGTGGAATGCGTACCTCAGTCA
CTTGAAAGCGCAAAAGGGGCAGCCTCTGGTAGGGGCCTACCTAACGGATG
AGGAGGTCAGACGACTGgtaagtgtaatgtccctcctgtctcgctcacgt
gtttactctctctttactgccgtacatgcaccgtagcgattcatcccatg
ctttccgctgtagaatgtctcctcttgaatcctgcctcctgcctgttgag
ggtcaaacggagcgcggtctctcacatctcctcacccacccccttcctcc
ttccctccctccttccctccctcctagTCTCCGGAACAGATGCAGCAGCT
GAACAAACTCAAAGAGGAAGCAGCCAAGGCGGCTGCAGACAAGGGAAAAG
CCACACCGTCGTCGCTCGGGTAG
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protein sequence of NO28G00340.1

>NO28G00340.1-protein ID=NO28G00340.1-protein|Name=NO28G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MLLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDVLASF
QEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAKA
AADKGKATPSSLG*
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Synonyms
Publications