NO28G00080, NO28G00080 (gene) Nannochloropsis oceanica

Overview
NameNO28G00080
Unique NameNO28G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1287
Alignment locationchr28:40662..41948 +

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Properties
Property NameValue
Descriptionribosomal protein L23AB
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:40662..41948 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR012678Ribosomal_L23/L15e_core_dom
IPR005633Ribosomal_L23/L25_N
IPR013025Ribosomal_L25/23
Homology
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: XP_004337603.1 (ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff] >ELR15590.1 ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 187.6 bits (475), Expect = 2.800e-44
Identity = 95/137 (69.34%), Postives = 114/137 (83.21%), Query Frame = 0 
Query:   10 SKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            SKA ++ KT+KKG + R  +V T VHF+RPKTL+L R PKY R+SVP   K+D++R++R+PLTTESAMKKIEDNNTLVFIVDL ANKRQIK AVK++YDI   KVNTL+RPDG KKAYVRL  D DALD+AN+IGII
Sbjct:   74 SKALKLQKTIKKGATKRVRKVRTNVHFFRPKTLRLPRNPKYPRRSVPRTNKLDQFRVLRHPLTTESAMKKIEDNNTLVFIVDLKANKRQIKDAVKKMYDITAEKVNTLVRPDGKKKAYVRLTGDFDALDIANRIGII 210
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: GAX96582.1 (60S ribosomal protein L23a putative [Pythium insidiosum])

HSP 1 Score: 187.6 bits (475), Expect = 2.800e-44
Identity = 99/145 (68.28%), Postives = 115/145 (79.31%), Query Frame = 0 
Query:    2 AAGKSDKASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            A  K+     A +V K + KG   +  +V TKVHFY+PKTLKL R PKYARK+VP   KMDKYR+I+ PLTTESAMKKIEDNNTLVF+VD+ ANKRQIK A+K+LYDI+ AKVNTLIRPDG KKAYVRL  D DALDVAN+IG+I
Sbjct:    4 ATPKTAAGKTAAKVSKKVLKGSHGKAVQVRTKVHFYKPKTLKLARAPKYARKAVPTRNKMDKYRIIKSPLTTESAMKKIEDNNTLVFLVDILANKRQIKDAIKQLYDIKAAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 148
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: XP_009517215.1 (hypothetical protein PHYSODRAFT_353704 [Phytophthora sojae] >EGZ29940.1 hypothetical protein PHYSODRAFT_353704 [Phytophthora sojae])

HSP 1 Score: 185.7 bits (470), Expect = 1.100e-43
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0 
Query:    5 KSDKASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            K+     A +V K + KG   +  ++ TKVHFY+PKTL+L R P+YARKSVP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK AVK+LYDI+ AKVNTLIRPDG KKAYVRL  D DALDVAN+IG+I
Sbjct:    7 KTSAGKAAAKVSKKVIKGSHGKVLKIRTKVHFYKPKTLQLARAPRYARKSVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIKDAVKQLYDIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 148
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: OWZ21119.1 (60S ribosomal protein L23a [Phytophthora megakarya])

HSP 1 Score: 184.9 bits (468), Expect = 1.800e-43
Identity = 99/145 (68.28%), Postives = 117/145 (80.69%), Query Frame = 0 
Query:    2 AAGKSDKASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            AAGKS     A ++ K + KG   +  ++ TKVHFY+PKTL+L R P+YARK+VP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK AVK+LYDI+ AKVNTLIRPDG KKAYVRL  D DALDVAN+IG+I
Sbjct:   11 AAGKS-----AAKLSKKVIKGSHGKVLKIRTKVHFYKPKTLQLARAPRYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIKDAVKQLYDIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 150
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: POM80206.1 (60S ribosomal protein L23a [Phytophthora palmivora var. palmivora])

HSP 1 Score: 184.9 bits (468), Expect = 1.800e-43
Identity = 99/145 (68.28%), Postives = 117/145 (80.69%), Query Frame = 0 
Query:    2 AAGKSDKASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            AAGKS     A ++ K + KG   +  ++ TKVHFY+PKTL+L R P+YARK+VP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK AVK+LYDI+ AKVNTLIRPDG KKAYVRL  D DALDVAN+IG+I
Sbjct:   11 AAGKS-----AAKLSKKVIKGSHGKVLKIRTKVHFYKPKTLQLARAPRYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIKDAVKQLYDIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 150
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: XP_008897254.1 (60S ribosomal protein L23a [Phytophthora parasitica INRA-310] >ETI34044.1 60S ribosomal protein L23a [Phytophthora parasitica P1569] >ETK74402.1 60S ribosomal protein L23a [Phytophthora parasitica] >ETL27836.1 60S ribosomal protein L23a [Phytophthora parasitica] >ETL81083.1 60S ribosomal protein L23a [Phytophthora parasitica] >ETM34275.1 60S ribosomal protein L23a [Phytophthora parasitica] >ETN17725.1 60S ribosomal protein L23a [Phytophthora parasitica INRA-310] >ETO62850.1 60S ribosomal protein L23a [Phytophthora parasitica P1976] >ETP03934.1 60S ribosomal protein L23a [Phytophthora parasitica CJ01A1] >ETP32089.1 60S ribosomal protein L23a [Phytophthora parasitica P10297] >KUF84940.1 60S ribosomal protein L23a [Phytophthora nicotianae] >KUF95540.1 hypothetical protein AM588_10009708 [Phytophthora nicotianae])

HSP 1 Score: 183.7 bits (465), Expect = 4.100e-43
Identity = 99/145 (68.28%), Postives = 116/145 (80.00%), Query Frame = 0 
Query:    2 AAGKSDKASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            AAGK+     A ++ K + KG   +  ++ TKVHFY+PKTLKL R P YARK+VP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK AVK+LYDI+ AKVNTLIRPDG KKAYVRL  D DALDVAN+IG+I
Sbjct:   11 AAGKA-----AAKLSKKVIKGSHGKVLKIRTKVHFYKPKTLKLARAPLYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIKDAVKQLYDIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 150
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: XP_024576913.1 (60s ribosomal protein l23a [Plasmopara halstedii] >CEG40544.1 60s ribosomal protein l23a [Plasmopara halstedii])

HSP 1 Score: 183.3 bits (464), Expect = 5.300e-43
Identity = 99/145 (68.28%), Postives = 116/145 (80.00%), Query Frame = 0 
Query:    2 AAGKSDKASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            AAGKS     A ++ K + KG   +  ++ TKVHFY+PKTLKL R P YARK+VP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK AVK+LY+I+ AKVNTLIRPDG KKAYVRL  D DALDVAN+IG+I
Sbjct:   11 AAGKS-----AAKLSKKVIKGSHGKVLKIRTKVHFYKPKTLKLARSPLYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIKDAVKQLYNIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 150
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: XP_020602780.1 (60S ribosomal protein L23a-like [Orbicella faveolata])

HSP 1 Score: 183.0 bits (463), Expect = 6.900e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    2 AAGKSDKASKAKQVGKTLKKGMS-VRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            A+ KS + SKA++  K++ KG+    K +V T VHFYRPKTL L R PKY R S P   K+D Y +I++PLTTESAMKKIEDNNTLVFIVD+ ANK QIKA+VK+LYDI  +KVNTLIRPDG KKAYVRLA D DALDVANKIGII
Sbjct:   13 ASAKSSETSKAQKAKKSVLKGVQRTPKRKVRTNVHFYRPKTLSLRRTPKYPRHSAPRTNKLDHYAIIKHPLTTESAMKKIEDNNTLVFIVDVRANKPQIKASVKKLYDIDASKVNTLIRPDGQKKAYVRLAPDYDALDVANKIGII 158
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: XP_002907598.1 (60S ribosomal protein L23a [Phytophthora infestans T30-4] >EEY64162.1 60S ribosomal protein L23a [Phytophthora infestans T30-4])

HSP 1 Score: 182.6 bits (462), Expect = 9.000e-43
Identity = 98/145 (67.59%), Postives = 116/145 (80.00%), Query Frame = 0 
Query:    2 AAGKSDKASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            AAGK+     A ++ K + KG   +  ++ TKVHFY+PKTL+L R P YARK+VP   K+DKYR+I+ PLTTESAMKKIEDNNTLVF+VDL ANKRQIK AVK+LYDI+ AKVNTLIRPDG KKAYVRL  D DALDVAN+IG+I
Sbjct:   11 AAGKA-----AAKLSKKVIKGSHGKVLKIRTKVHFYKPKTLRLARAPLYARKAVPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIKDAVKQLYDIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 150
[Close]
BLAST of NO28G00080 vs. NCBI_GenBank
Match: OEU07914.1 (Ribosomal_L23-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 181.8 bits (460), Expect = 1.500e-42
Identity = 92/138 (66.67%), Postives = 114/138 (82.61%), Query Frame = 0 
Query:    9 ASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKYARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIKAAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII 147
            A KA  V   LKKG+S + TR+HT VHFY+PKTLK  R+PKYA+KSVP    +D + +I+YPLTTES+MK IED+NTLVFIVD+ ANKRQIKAAV+ELY+I+  KVNTLI P GLKK+YVRL++D DALDVAN++G+I
Sbjct:    4 AGKASAVANALKKGISKKGTRIHTGVHFYKPKTLKAARKPKYAKKSVPKKAGLDSFSIIKYPLTTESSMKLIEDSNTLVFIVDIKANKRQIKAAVRELYNIECEKVNTLITPRGLKKSYVRLSKDYDALDVANRVGVI 141
The following BLAST results are available for this feature:
BLAST of NO28G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_004337603.12.800e-4469.34ribosomal protein L23, putative [Acanthamoeba cast... [more]
GAX96582.12.800e-4468.2860S ribosomal protein L23a putative [Pythium insid... [more]
XP_009517215.11.100e-4368.31hypothetical protein PHYSODRAFT_353704 [Phytophtho... [more]
OWZ21119.11.800e-4368.2860S ribosomal protein L23a [Phytophthora megakarya... [more]
POM80206.11.800e-4368.2860S ribosomal protein L23a [Phytophthora palmivora... [more]
XP_008897254.14.100e-4368.2860S ribosomal protein L23a [Phytophthora parasitic... [more]
XP_024576913.15.300e-4368.2860s ribosomal protein l23a [Plasmopara halstedii] ... [more]
XP_020602780.16.900e-4367.8160S ribosomal protein L23a-like [Orbicella faveola... [more]
XP_002907598.19.000e-4367.5960S ribosomal protein L23a [Phytophthora infestans... [more]
OEU07914.11.500e-4266.67Ribosomal_L23-domain-containing protein [Fragilari... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR088ncniR088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR143ngnoR143Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00080.1NO28G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612637gene_10992Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101283g2gene4478Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00080.1NO28G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00080 ID=NO28G00080|Name=NO28G00080|organism=Nannochloropsis oceanica|type=gene|length=1287bp
ATGGCAGCAGGCAAATCCGACAAGGCCAGCAAGGCAAAGCAAGTGGGCAA
GACCCTGAAGAAGGGCATGTCGGTGCGGAAGACGCGCGTGCACACTAAGG
TCCACTTCTACAGGCCCAAGACTCTGAAGCTTGACCGCCAGCCCAAGgta
ggtggagaggcgagggagggaaggaggaggaggaggcaagccgcagcagc
agcgagaaggtagtggcgcagagaggcttctagctggagaagggtctgag
cagggggatgaagggagatacaccattgcgtgtggatagggtggaagccg
aagggggggaaggagcgatgaacatggttagcgtcatctaattgaccgct
gctgtcagtacttgccctacaatgttaccttaaacttaatgtactccctt
cccccctccctcccgtcccctcttcccccttcttcccctccaccccagTA
CGCCCGCAAGTCTGTGCCCCACCTGCAGAAGATGGACAAGTACCGCCTCA
TCCGCTACCCCTTGACCACCGgtacggccctccctccctccctcccttct
tcccttgaacttctaggagatctgtcttgattctgaaacatagaacgatc
cgcctgacccctccttccctcccaccctccttccctgcctctctccctcc
ttcccccgctccccagAATCGGCCATGAAGAAGATCGAAGACAACAACAC
CCTCGTGTTTATCGTTGACCTCACCGCCAACAAGCGCCAAATTAAGgtac
gccgtccctccctcactccctctccatcgtcccccaccccctcctcccgc
acttctgccctcccttcatttctacctccctcccatcccgtatttgtacc
accaaaaaatcacctcctccctcccgtcctcccgtcctccctccctccct
ccatccctctgcagGCCGCCGTCAAGGAGCTTTACGACATCCAGCCTGCC
AAGGTCAACACCCTCATCCGgtaagaagggaaggagggaacgcgggaggg
aaagaggaaaagaggaaaggaaggagtgggaggaacaggcttgttgactg
agtagcgtggcttctcctccctccctccctccctcccttcctccatgtgt
aataactacatcaaaacgtggtccactcacccctccctccctccctccct
ccccccgtccctccaaccctccctccctccctccctccctccctccctcc
agCCCTGACGGCCTTAAGAAGGCTTATGTCCGACTAGCCCAGGACAGTGA
CGCCCTGGATGTGGCCAACAAGATCGGCATCATCTAA
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protein sequence of NO28G00080.1

>NO28G00080.1-protein ID=NO28G00080.1-protein|Name=NO28G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MAAGKSDKASKAKQVGKTLKKGMSVRKTRVHTKVHFYRPKTLKLDRQPKY
ARKSVPHLQKMDKYRLIRYPLTTESAMKKIEDNNTLVFIVDLTANKRQIK
AAVKELYDIQPAKVNTLIRPDGLKKAYVRLAQDSDALDVANKIGII*
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Synonyms
Publications