NO28G00050, NO28G00050 (gene) Nannochloropsis oceanica

Overview
NameNO28G00050
Unique NameNO28G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2287
Alignment locationchr28:15574..17860 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:15574..17860 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0016042lipid catabolic process
GO:0006629lipid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR016035Acyl_Trfase/lysoPLipase
IPR033562PLPL
IPR002641Patatin/PLipase_A2-rel
Homology
BLAST of NO28G00050 vs. NCBI_GenBank
Match: EWM20908.1 (Acyl transferase/acyl hydrolase/lysophospholipase [Nannochloropsis gaditana])

HSP 1 Score: 168.7 bits (426), Expect = 3.100e-38
Identity = 89/177 (50.28%), Postives = 116/177 (65.54%), Query Frame = 0
Query:  151 ISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDGKPLKRLDRHGLVLDGSFRLTKREL 328
            ++FPGGG FFYWQ+G   +L QHF+LR A LVGASAG+LTA L  C V    A E A+ +     ++ R +GLVGVWGA+V +WL E+LP++AAE C GRV  +++VL           CLP RR  V+DF S+ +L+ETCLAS H+P  MDGKP  RL R    +DGS    +R+L
Sbjct:  243 VNFPGGGKFFYWQSGVATFLNQHFDLRSAKLVGASAGSLTATLMACHVDAHHATETAVRILHRYKVYERAMGLVGVWGAVVRDWLWEVLPDNAAELCAGRV--HISVL-----------CLPYRRCHVTDFASKEDLIETCLASAHLPLVMDGKPF-RLWRGWPCMDGSILAGRRDL 405          
BLAST of NO28G00050 vs. NCBI_GenBank
Match: PRW58356.1 (serine carboxypeptidase-like 21 [Chlorella sorokiniana])

HSP 1 Score: 147.9 bits (372), Expect = 5.700e-32
Identity = 77/171 (45.03%), Postives = 103/171 (60.23%), Query Frame = 0
Query:  149 PTISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDGKPLKRLDRHGLVLDGS 320
            P +SF GGGIFF+W+ G + YL ++F+LR   +VGASAG L   L  C V    A   A  L+    ++ RP GL G+WGAL+ EWL ELLPEDAAE+C+GRV+L V  +              LR   + DFES+ +L++ C+ +VHIPFF+DG    R  R    +DGS
Sbjct:  411 PILSFAGGGIFFWWELGVLRYLHRNFDLRGVQMVGASAGGLICALAACGVDEDKAVRVAHRLAQEYGVFERPGGLAGIWGALIREWLDELLPEDAAERCRGRVRLVVTEVP------------SLRLRYLEDFESKEDLIDACMTTVHIPFFLDGN-ASRTYRGQPYIDGS 568          
BLAST of NO28G00050 vs. NCBI_GenBank
Match: XP_005825501.1 (hypothetical protein GUITHDRAFT_144126 [Guillardia theta CCMP2712] >EKX38521.1 hypothetical protein GUITHDRAFT_144126 [Guillardia theta CCMP2712])

HSP 1 Score: 144.4 bits (363), Expect = 6.300e-31
Identity = 76/178 (42.70%), Postives = 109/178 (61.24%), Query Frame = 0
Query:  149 PTISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLY-VNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDGKPLKRLDRHGLVLDGSFRLTKR 326
            P I FPGGGI+F+WQAG V  LQ+  N+   +  GASAG+L+AV   C V M  A   A  L+    +W R  GL G+WG ++ +WL ELLPE+AAE C  RV +  V+V  ++       + LPL+R  ++ F+++ +L+E C+ASVH+P F+DGK  + LD   + +DGS     R
Sbjct:   17 PLIVFPGGGIYFWWQAGVVQGLQKRINVDSFDFTGASAGSLSAVFAACGVDMMQAFHLAQKLAEEKNVWTRKEGLAGIWGDMIYQWLDELLPENAAEICTDRVDMVAVSVTSVRL------SFLPLKRKSITRFKTKKDLIEACMASVHVPMFLDGKMSRSLD-GDICVDGSITFVLR 187          
BLAST of NO28G00050 vs. NCBI_GenBank
Match: XP_001702678.1 (predicted protein [Chlamydomonas reinhardtii] >PNW77319.1 hypothetical protein CHLRE_10g431350v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 142.9 bits (359), Expect = 1.800e-30
Identity = 71/173 (41.04%), Postives = 105/173 (60.69%), Query Frame = 0
Query:  148 APTISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDGKPLKRLDRHGLVLDGSF 321
            A T+S+ G GIFF+WQ GA+ +L + ++L    + GAS GAL AVL  C +   +  +RA  LS+   +W RPLGLVGVWG+L+ +WL +LLP+DAAE+C+G++ + V  L              + +  +SDF+ + +L+   +AS HIP  +D K   RL R    +DGSF
Sbjct:   84 ATTLSWAGAGIFFFWQLGALKFLAERYDLTRVPMAGASGGALAAVLACCGIPADVVLQRAYDLSVQHGIWERPLGLVGVWGSLIEQWLDDLLPDDAAERCRGKITIIVTTLP------------NMGQVGISDFKDKKDLINCAMASAHIPMLLDLK-FARLCRGKFCVDGSF 243          
BLAST of NO28G00050 vs. NCBI_GenBank
Match: KXZ48604.1 (hypothetical protein GPECTOR_26g507 [Gonium pectorale])

HSP 1 Score: 142.9 bits (359), Expect = 1.800e-30
Identity = 73/171 (42.69%), Postives = 102/171 (59.65%), Query Frame = 0
Query:  150 TISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDGKPLKRLDRHGLVLDGSF 321
            T+S+ G GIFF+WQ GA+ YL + ++L    + GAS GAL AVL  C V   L  +RA  LS+   +W RPLGLVG+WG L+ +WL +LLP DAAE+C+G+V + V  L              + +  +SDF+ + +L+   +AS HIP  +D K   RL R    +DGSF
Sbjct:    9 TLSWAGAGIFFFWQLGALKYLAERYDLTRVPMAGASGGALAAVLAACGVPADLVLQRAYDLSVKHGIWERPLGLVGIWGTLIEQWLDDLLPIDAAERCRGKVTVVVTTLP------------NMGQVGISDFKDKEDLINCAMASSHIPMLLDLK-FSRLCRGKYCVDGSF 166          
BLAST of NO28G00050 vs. NCBI_GenBank
Match: PNH11898.1 (Patatin-like phospholipase domain-containing protein 1 [Tetrabaena socialis])

HSP 1 Score: 142.5 bits (358), Expect = 2.400e-30
Identity = 72/173 (41.62%), Postives = 104/173 (60.12%), Query Frame = 0
Query:  148 APTISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDGKPLKRLDRHGLVLDGSF 321
            A T+S+ G GIFF+WQ GA+ +L + ++L    + GAS GAL +VL  C V      +RA  LS+   +W RPLGLVGVWG+L+ +WL +LLP+DAAE+C+G++ + V  L   A            +  +SDF+ + +L+   +AS HIP  +D K   RL R    +DGSF
Sbjct:   84 ATTLSWAGAGIFFFWQLGAMKFLSERYDLTRVPMAGASGGALASVLAACGVPADEVLQRAYDLSVKYGIWERPLGLVGVWGSLIEQWLDDLLPDDAAERCRGKITIIVTTLPNMA------------QVGISDFKDKKDLITAAMASSHIPMLLDLK-FARLCRGKYCVDGSF 243          
BLAST of NO28G00050 vs. NCBI_GenBank
Match: GAX80652.1 (hypothetical protein CEUSTIGMA_g8087.t1 [Chlamydomonas eustigma])

HSP 1 Score: 142.1 bits (357), Expect = 3.100e-30
Identity = 70/172 (40.70%), Postives = 102/172 (59.30%), Query Frame = 0
Query:  149 PTISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDGKPLKRLDRHGLVLDGSF 321
            P+ S+ G G++F+WQ GA+ YL +  +L + ++ GAS G+L AVL  C V   L  +RA  LS+   +W RP+GL G+WG LV +WL ELLPE+A E C GRV + V  L              +R+  +SDF+ + +L+  C+AS H+P  +D K + R  R    +DGSF
Sbjct:   77 PSFSWAGSGLYFFWQLGAMKYLAEQCDLSKVHMTGASGGSLVAVLAACGVSADLILKRAYELSLEFNIWDRPMGLTGIWGGLVEQWLDELLPENAHEMCGGRVTVVVTTLP------------DMRQVGISDFKDKQDLINACMASCHVPLVLDLK-VTRYCRGSECVDGSF 235          
BLAST of NO28G00050 vs. NCBI_GenBank
Match: CBJ30266.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 141.4 bits (355), Expect = 5.300e-30
Identity = 78/185 (42.16%), Postives = 103/185 (55.68%), Query Frame = 0
Query:  149 PTISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDGKPLKRLDRHGLVLDGSFRLTKRELCEGGGR 334
            P +SFPGGGIFF+WQAG +  LQ+ +NL   + VGASA                       L  +  +W RPLGL GVWGA+V +WL ELLP+DA   C+ RV L V  +  +          P RR  VS+F S+ +L++ C+ASVHIP+FMD K      R G  +DGSFR ++ +L  G  R
Sbjct:  102 PVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAXXXXXXXXXXXXXXXXXXXXXXXLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICQDRVHLLVIGIWPR----------PFRRRAVSNFTSKSDLIKACMASVHIPWFMD-KHFSARHRGGRFVDGSFRASREDLSLGDDR 275          
BLAST of NO28G00050 vs. NCBI_GenBank
Match: XP_002950157.1 (hypothetical protein VOLCADRAFT_104567 [Volvox carteri f. nagariensis] >EFJ48825.1 hypothetical protein VOLCADRAFT_104567 [Volvox carteri f. nagariensis])

HSP 1 Score: 140.6 bits (353), Expect = 9.100e-30
Identity = 71/173 (41.04%), Postives = 101/173 (58.38%), Query Frame = 0
Query:  148 APTISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDGKPLKRLDRHGLVLDGSF 321
            A T+S+ G GI+F+WQ GA+ YL + ++L    + GAS GAL AVL  C +      +RA  LS+   +W RPLGLVGVWG+L+ +WL +LLP DAAE+C+G+  + V  L   A            +  ++DF  + +L+   +AS HIP  +D K   RL R    +DGSF
Sbjct:   80 AKTLSWAGAGIYFFWQLGAMKYLAERYDLTRVPMAGASGGALAAVLAACGIPADTVLQRAYDLSVKHGIWERPLGLVGVWGSLIEQWLDDLLPADAAERCRGKTTIIVTTLPNMA------------QVGITDFTDKRDLINAAMASAHIPMLLDLK-FARLCRGKYCVDGSF 239          
BLAST of NO28G00050 vs. NCBI_GenBank
Match: GAQ86777.1 (hypothetical protein KFL_003100140 [Klebsormidium nitens])

HSP 1 Score: 140.6 bits (353), Expect = 9.100e-30
Identity = 74/155 (47.74%), Postives = 99/155 (63.87%), Query Frame = 0
Query:  149 PTISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCMPLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGRVQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFFMDG 304
            P I FPGGG+FFYW  G V+ LQ   ++  A++ GASAGAL +VL  C V M  AAE A  LS+   LW R L L  VWG L+ +WL +LLP++AAE C GR+ L+  VLEL  +       L  +R  V+DF+ + +L++  LASVHIP F++G
Sbjct:  124 PIICFPGGGMFFYWMIGVVNILQDEIDMTTAHMSGASAGALASVLAACGVDMRRAAEHAFQLSIDEKLWDRKLKLALVWGRLIRQWLWDLLPDNAAELCNGRIHLF--VLELPGL----RTGLHCKRVPVTDFKDKADLIDCALASVHIPIFING 272          
The following BLAST results are available for this feature:
BLAST of NO28G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20908.13.100e-3850.28Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
PRW58356.15.700e-3245.03serine carboxypeptidase-like 21 [Chlorella sorokin... [more]
XP_005825501.16.300e-3142.70hypothetical protein GUITHDRAFT_144126 [Guillardia... [more]
XP_001702678.11.800e-3041.04predicted protein [Chlamydomonas reinhardtii] >PNW... [more]
KXZ48604.11.800e-3042.69hypothetical protein GPECTOR_26g507 [Gonium pector... [more]
PNH11898.12.400e-3041.62Patatin-like phospholipase domain-containing prote... [more]
GAX80652.13.100e-3040.70hypothetical protein CEUSTIGMA_g8087.t1 [Chlamydom... [more]
CBJ30266.15.300e-3042.16conserved unknown protein [Ectocarpus siliculosus][more]
XP_002950157.19.100e-3041.04hypothetical protein VOLCADRAFT_104567 [Volvox car... [more]
GAQ86777.19.100e-3047.74hypothetical protein KFL_003100140 [Klebsormidium ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR088ncniR088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR143ngnoR143Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00050.1NO28G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|384110gene_10990Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00050.1NO28G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00050 ID=NO28G00050|Name=NO28G00050|organism=Nannochloropsis oceanica|type=gene|length=2287bp
ATGCCCGCAGCAGAGGCAGTTTCCCAGCCGCAGTGTGCCACATCCTCCGC
CGGCGGATCAACAAGAAGGAGGAAGAGAAACTGGCACCACTATCTCGgta
agaaaagtaaattcccccaaaactcattcagccaggccttgccctcatct
cgtgactctcccatgaggggtgggagagaaggatcagtttcgccacttat
catgcttctcaatggggcatggacgaagtcgttgtgcggataccctatct
gtttactttctgtaccttcctcgtgcgaaagaattcggcttgcctaatcc
aacgccctttttaactttttggggggaaaacatgtcctgacagacatact
cagccatcgtagactaatcgtccttcgaattcctcgccatctacactctc
cccctaatcttgcaacacgccacctccctctcctcccttctttccgcaca
gctgcatgtcttcctatctcccttcttcctcatcctttcatcagccccct
catatcgcataaccccccactaaacagCCCCCCTTCTCCGCTTTGGCACT
CTCCTTCCTCTGCTGCTGAGTCTCCTCACCCCAAGCAAAATCACTTTTGC
CTTTCCAATAACGGCGCGATTTCCCCACCACCAGCAGCAGCACCACCAGC
ACCACCGGCATCAGTACAACCACAGACTTCTCTTCCCCACGCCCTCCTCG
TCGTCCTCCTTCTCCTCTGTCATCCCCTCGGCCTCCTCACTCTCCTCCTC
ATCTTTCCCGTCCTCCTCCTCTTCTTTTCCTTCCTCAATCCCCACCTCCC
TCATCACCACGTCTTCCTCTTCCTCTTCCTCTTCCATCCCCGTCGCCTCC
TCTCCCCTCCCCTCCTCCTTCGCGCCTACCATTTCCTTTCCAGGAGGTGG
CATCTTCTTCTACTGGCAGGCCGGCGCGGTGCACTACCTGCAGCAGCACT
TCAACCTCCGTGAAGCCAACCTAGTGGGGGCCTCGGCGGGGGCCCTGACA
GCCGTgtaagcaaaagtctttcttgccttcttccccctatgcctgccttc
gtcgttcctccccttccccttccccttccgtacctttcttcctacctcat
tcacgaatattcccctagggccgccacacctttctctccctcccttcctt
tcttcctccgctccccccaacgcgccgagaggtttctacccctcaagccg
tgaaagtaacccgtatctgtgcctcaccccctctccccctccccccccct
ccagTCTGACCGGCTGCGACGTGTGCATGCCACTGGCGGCGGAACGGGCC
CTCTCTCTGTCCATGTCCATCGCGCTATGGGCCCGGCCGCTGGGACTGGT
GGGCGTGTGGGGGGCGCTTGTCGGGGAGTGGCTGCGAGAGCTCTTGCCGG
AGGATGCGGCCGAGCAGTGCAAGGGGAGGgtaaggagagagggagggtaa
ggagggaggcaggaaggctcgttggctgaagcgccatttgctcttgtccc
acctcactttgccacccgtactcaaccgatcgtcaattatttatccttcc
tccattaccaatatccaagGTGCAGCTGTACGTGAACGTACTGGAACTCA
AGGCTATGTTACAGAAGACCAGCAATTgtaagtacccccccgcgtcttcc
tccctctcttccccctttttccttcccctccccccttctcgtttgccttt
ttcttttcttcttcttttttatttcttgtcatcccccccgctccctccct
ccctccctccagccccccctccatcggaccttcgacttcgactctaattt
cctttttccccttttctttcttcttccattccctcccttcccttcgttcc
ttcctccctccttccagGCCTGCCTCTCCGTCGGACCCGCGTCTCGGACT
TCGAGTCGAGGCACGAGCTTGTAGAGACCTGCCTGGCCAGTGTGCACATT
CCATTCTTCATGgtaaggcggagggaagggagataggacggaaggggagg
gagggagagaaggagagagggagggaggtagagagagagagagagacagg
ggagggcgaaagggaaggagggagggagggaggcatgacctcttggccag
tgcaagtcgtactcatccccccccctccctccctctctccctccctctct
cactcccttcccccctccagGACGGCAAGCCCCTCAAACGCCTAGACAGA
CACGGCCTGGTTCTCGACGGTTCCTTCCGTCTCACCAAGAGGGAGTTGTG
CGAGGGGGGGGGAAGGAAGGGGGAGGGGTGGTGCTGA
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protein sequence of NO28G00050.1

>NO28G00050.1-protein ID=NO28G00050.1-protein|Name=NO28G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MPAAEAVSQPQCATSSAGGSTRRRKRNWHHYLAPLLRFGTLLPLLLSLLT
PSKITFAFPITARFPHHQQQHHQHHRHQYNHRLLFPTPSSSSSFSSVIPS
ASSLSSSSFPSSSSSFPSSIPTSLITTSSSSSSSSIPVASSPLPSSFAPT
ISFPGGGIFFYWQAGAVHYLQQHFNLREANLVGASAGALTAVLTGCDVCM
PLAAERALSLSMSIALWARPLGLVGVWGALVGEWLRELLPEDAAEQCKGR
VQLYVNVLELKAMLQKTSNCLPLRRTRVSDFESRHELVETCLASVHIPFF
MDGKPLKRLDRHGLVLDGSFRLTKRELCEGGGRKGEGWC*
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Synonyms
Publications