NO27G01850, NO27G01850 (gene) Nannochloropsis oceanica

Overview
NameNO27G01850
Unique NameNO27G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2653
Alignment locationchr27:622972..625624 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:622972..625624 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|303827gene_9894Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01850.1NO27G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01850.2NO27G01850.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01850.3NO27G01850.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01850.1NO27G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01850.2NO27G01850.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01850.3NO27G01850.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01850 ID=NO27G01850|Name=NO27G01850|organism=Nannochloropsis oceanica|type=gene|length=2653bp
GAATGTGCACGGTACCGTGATTTTTAACTATCACGAGGAACTTTTCGCCT
TCACTTCTTCTTCTGTTTCACCTTTTTCATTGTCTTTTTCTTCTTCTTTT
TACCATAAAATAGGGTGTGACTGTGTACATTCGACTCTCCCAAAAAAAAC
TTAAAGTTCTTTTATAGTTTTTAATGGGGTTTAAGCCCTTATTCGCCACA
AATCGGGGGTTTAGATCGTAGTGTATCTAGTGTTTCGTGGAGAACAACGT
TGGACGGAGACAGCTGACGGACAGGTCGGTTAACTGATCTCACACGCTTA
GTGCGACCAACAGAGCGTTGTCATATGCAACCATGGCCATGACGCACCCC
TTCAATATTTTGATTAACCATACCGACTTGATTACAACTCAGCAGAGGTC
TTTTGTATGTCCGCTGGACTTCTTCTTCCCCCACAATACAGCCAGACGAT
CATCACAGCCTGCCTGCATGGCATCAGGACCACCACCACTGCCCGCTGCC
CCCTCCCTCGACGCTCTCTCCCTTCACGACAGCAACGACAGCACCCCACG
AGACCGTTCATCTCTTACTCCGACCCATTTTGCGGACGCTTGGGACGTTT
GCCTGGAAGCGCACCTCCTCTCCTCCCTCCTCCTTCCCTCAGACCTGGCT
GCCCTCGCCGCCACCAACAAAGCGTTCGAGTCGTTTCGCTTCCAGCACTG
GCAGACACAAGACAAGACGATAGCGGAAGGAGAGTGGCGCGCGTGGTGGG
TGTGTCTGGCGAGTCAGCGTTTGAGTCCGTATTTGACGACGAAGGAGTTG
TGTTTGTCCTTGGCGGTGACCGCCAAGCCCTTTCGACCCTTTGGACGTCA
ACCTgtaagaaggcggagggacggaggaagggaaggaaaaggaggggagg
gagggaggatggatggcccagggaggagaggtgtcaagaagacagaggag
gtctgtgcgcgtgaactggaactcagggctccttgctgattgtcctccct
ctttcccctcgtcatacgaacacacccaacagTGGCGCCTCCGTCCTCGC
AGCTGGTCCCCACTATTGCTACAGgcacgtttctcttggaacttgtatcc
ttgtggcacactctctcctcttttcgtccctccgtccgtccgtccgttcc
tagcttatgtccacagcccaatccactcgcccctgactccatcgtctccc
cctccctccctccctccctccctctctttttccctcacagCGCATGGCCA
AGGGAAAGCTGCAAGAAGTCACATGGTTTGAGCTACCAGGCACTTTCCAA
Ggtagggatgggcgaaggagggaggaatggagggaggaagaagggaggga
gggaagaagtgggagcgacggacgggatcataacggacgaggagttgaaa
aggacacgcgtcttacagtgatcccccctccctccctccctgctttcctt
cctcccaccctcattttcagGGCATACCGATTCGCGCAAGCACATCGCCT
TCCTCCACTCCCTCGTTCCGGCCTTCACCCGCCTCCCCCTCCTGACCCAC
CTCCACGTCTGTGGCCTTCGTGTCTCCCTCCTCGCCAAAATTCTGGACGA
GGCCCTCCCCCTCGCCCTCCTTCCTTCCTTCCCTCCCTCTTCCTCTCAAA
AACTCAAGAAAGCAAAAGGAGGAGGAGGAAAGGCTCGTCTGCTCGTGTTG
GACGCCGGCACACACGCCTCGCGGCAGGCGACTGTCTACCCTACCACTTT
GTTCCACAACTTGACTTCCTTGCACACGCTGCGGCTGTCGGGTCGCTATC
AAGTCCTTCCTTGCCTTGCGCAAGCAATCAAAGGCAGGCATCTGCCGCGg
tagggatgagtgtatagcggaagggagggaggaagggggggtcggagggg
ggagggtgttgcgagcggcgggtttgacgtcgcgtcggagcaagccgagc
ggcccatgaacttgttctggagaccgcccttcatcccccttcctctctct
ctccctccctcctctcctcccctccctcaagCTTGGAGAGCCTGGACGTG
TCGTGGGCGTGGCTCGAGGCCAAAGACCTCCGGCCGCTGCACCGCGCCGT
GGAGGAGGTAATGGAGGGCGGAACCCCCTTCCCCCTTCGGCGCCTGGACA
TGTCCAACAATACGTTGGACGACACAGCGGTGGAGCTGTTGACATCCATA
TTCGAGAAGACGGAGCAGACGATCGAGGAAGTGCGTTTGGAGGGGAATCG
CTTCACGAGGGAGGGGAAGAAGGCTTTGGGTCGGTCGGCGGCAGCGATTG
TGAACGACAGTGTAGGGAAAGGGATGACACTCCTTCTGTGAGCACTATGG
GGGATAAATAAGGGTTGAAGAAAGAAAGATGAACGCAAAGTACTCGTCCT
CGTGCACAAAATCTTATTCGCGGTGGACGTGTTTGAATCCATTTTTCCTT
TTTAAATTTACTTTGATCTCTACTTCTATCGGGCTATCGTGTTGGTGCTG
TTCGCTTTTACTTTCATGTGCATCTGTGTCATCTCCGACTCCCTCCTTCC
CTTCACGATCCCTTCCTCTTCTCCTCTCCGCCTATCTTCGTGTATCTATA
TAGAGAAACACACACACACACACACAGAGACAGACACAGACACACAGACA
CAG
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protein sequence of NO27G01850.1

>NO27G01850.1-protein ID=NO27G01850.1-protein|Name=NO27G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MAMTHPFNILINHTDLITTQQRSFVCPLDFFFPHNTARRSSQPACMASGP
PPLPAAPSLDALSLHDSNDSTPRDRSSLTPTHFADAWDVCLEAHLLSSLL
LPSDLAALAATNKAFESFRFQHWQTQDKTIAEGEWRAWWVCLASQRLSPY
LTTKELCLSLAVTAKPFRPFGRQPWRLRPRSWSPLLLQRMAKGKLQEVTW
FELPGTFQGHTDSRKHIAFLHSLVPAFTRLPLLTHLHVCGLRVSLLAKIL
DEALPLALLPSFPPSSSQKLKKAKGGGGKARLLVLDAGTHASRQATVYPT
TLFHNLTSLHTLRLSGRYQVLPCLAQAIKGRHLPR*
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protein sequence of NO27G01850.2

>NO27G01850.2-protein ID=NO27G01850.2-protein|Name=NO27G01850.2|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MAMTHPFNILINHTDLITTQQRSFVCPLDFFFPHNTARRSSQPACMASGP
PPLPAAPSLDALSLHDSNDSTPRDRSSLTPTHFADAWDVCLEAHLLSSLL
LPSDLAALAATNKAFESFRFQHWQTQDKTIAEGEWRAWWVCLASQRLSPY
LTTKELCLSLAVTAKPFRPFGRQPWRLRPRSWSPLLLQRMAKGKLQEVTW
FELPGTFQGHTDSRKHIAFLHSLVPAFTRLPLLTHLHVCGLRVSLLAKIL
DEALPLALLPSFPPSSSQKLKKAKGGGGKARLLVLDAGTHASRQATVYPT
TLFHNLTSLHTLRLSGRYQVLPCLAQAIKGRHLPRLESLDVSWAWLEAKD
LRPLHRAVEEVMEGGTPFPLRRLDMSNNTLDDTAVELLTSIFEKTEQTIE
EVRLEGNRFTREGKKALGRSAAAIVNDSVGKGMTLLL*
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protein sequence of NO27G01850.3

>NO27G01850.3-protein ID=NO27G01850.3-protein|Name=NO27G01850.3|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MAQGGEVSRRQRRSVRVNWNSGLLADCPPSFPSSYEHTQQWRLRPRSWSP
LLLQRMAKGKLQEVTWFELPGTFQGHTDSRKHIAFLHSLVPAFTRLPLLT
HLHVCGLRVSLLAKILDEALPLALLPSFPPSSSQKLKKAKGGGGKARLLV
LDAGTHASRQATVYPTTLFHNLTSLHTLRLSGRYQVLPCLAQAIKGRHLP
RLESLDVSWAWLEAKDLRPLHRAVEEVMEGGTPFPLRRLDMSNNTLDDTA
VELLTSIFEKTEQTIEEVRLEGNRFTREGKKALGRSAAAIVNDSVGKGMT
LLL*
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Synonyms
Publications