NO27G01800, NO27G01800 (gene) Nannochloropsis oceanica

Overview
NameNO27G01800
Unique NameNO27G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3708
Alignment locationchr27:611823..615547 -

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Properties
Property NameValue
DescriptionAnkyrin repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:611823..615547 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO27G01800 vs. NCBI_GenBank
Match: EWM20122.1 (Ankyrin repeat-containing domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 82.4 bits (202), Expect = 7.100e-12
Identity = 81/214 (37.85%), Postives = 97/214 (45.33%), Query Frame = 0 
Query:  151 LSLAEAAFLYECCSQGLTSYLQRVLAAAVERCLAMLPPVEKNEGKEDGEEREG-------GRKG-GQTSAISVTSTTRDNYAGAALTPAAAATTVPAAAIRDPRH-SALVHSVAFALLTCPVPQQYSRSPFMAACANGQLDTITWALSLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATALSLAAAEGWEEIVLLLL 356
            +SL EAAF YECC QG T YL RVL A  +  L       +N  +E+ E +EG        R G G T     TS T    A  AL PA      PA++     H   L+H+VA ALL+ P+PQ Y R+PFMAACA GQ   +T  L LL                                           GATALSLAAA GW+ +V LLL
Sbjct:   64 VSLKEAAFAYECCCQGWTGYLLRVLRARADTSLRGKGGA-RNGCEEETERKEGDPADMRHARDGCGGTGPGHDTSHT----ALLALPPALP----PASSFSSHAHRPTLLHAVAQALLSFPLPQHYGRTPFMAACALGQAALLTSLLPLL-----------------------LPAPPPSLLPSAFLDVEDETGATALSLAAAGGWDRVVGLLL 245
The following BLAST results are available for this feature:
BLAST of NO27G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20122.17.100e-1237.85Ankyrin repeat-containing domain protein, partial ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01800.2NO27G01800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01800.1NO27G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608233gene_9900Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01800.2NO27G01800.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01800.1NO27G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01800 ID=NO27G01800|Name=NO27G01800|organism=Nannochloropsis oceanica|type=gene|length=3708bp
ATGAAGCTTCCCTCAGAGAAATGGCCCTTGCCACCGCCAATGGGGCTGCA
GCAACATCAGCACCAGCAGCAGCAGCACCAACATCATGAGCATCAGCAAC
TGCAGCAGCAGCAGCATCGAATGGCGCCTCCAACTTCGATCTGCTCTTTG
GACTCTTTTCCATCTGTCGCCACCGTTGTTGCTGCTCCTCTCACGACTGC
TCCATGCGCTCAGCACTGCGATGACGACTGCGCCGACGCCATGCTGTACA
AGAACCACATCCAGGACGACCAGGACGATGCAGTCAGCACACACTCTACT
TGCTCCTCCTCTTCCTCCTCCTGCTCCTCCCTCCCCCCCAATCCCATGTG
CCTCGACCCCATCCCCGACAGTCACCCGCTACCCCGCCTCCCTCCTCTTT
TCTGTGCCCCCACATCCCTTCCCCCCATCCTGCCGCCTCCTCTTCCTCAG
CTTTCTTTGGCCGAGGCGGCCTTCTTGTATGAGTGTTGTAGCCAGGGCCT
GACGAGCTACTTACAGCGAGTACTAGCAGCAGCAGTAGAAAGGTGCCTGG
CCATGCTCCCACCTGTAGAGAAAAACGAAGGGAAGGAAGATGGGGAGGAG
AGGGAGGGAGGGAGGAAGGGAGGGCAGACGTCTGCTATATCGGTAACTTC
CACCACCCGGGACAATTATGCGGGAGCAGCACTAACACCAGCAGCAGCAG
CAACAACAGTACCAGCAGCAGCAATACGAGACCCTCGTCATTCCGCCCTC
GTACACTCTGTGGCCTTCGCCCTACTCACATGCCCCGTCCCTCAGCAATA
CTCCCGCTCCCCCTTCATGGCAGCCTGCGCCAATGGTCAGTTGGACACCA
TTACCTGGGCTCTCTCTCTCCTCCTTCCTTCCCTCCCTCCCTCCCTCCCT
CAACCCCTCCCTCCCTCCACTCCCTGTGCCTCTCCCTCCCTCCCTTCCTC
CTCCTCGTCCCCCTCCTCATCCTCTCTCCTTCTTGATCAGCAAGACGACA
CGGGCGCCACGGCGCTGTCCCTCGCCGCAGCCGAAGGCTGGGAGGAGATA
GTGCTGCTCCTACTGCATGTGCAGGGGAGAGGGGGGAGCAGGGCGGGGTG
GAGGAAGGGAGATAATGAGGGCTACTCTCCCTTTCTGTGGGCGGTGGGGA
AGAATCATCTTGGCGTGGCGAGAGCGCTGTTGGAAAGATGGCAGGACGAG
GAAGGGAACAGGGAGGAGGACGGGAAGGAGGAGGTGGCGATGGTTCTTCC
TCTTTCGCGCATTTCCCCTGCCCAGCCCCCGCCCCCGCCCCCTCCCCCCT
CCCTCCCGCCTTCCCTCCCTCCCTCGCACCTCCTCAACACTCCTGGGAGG
GTATGGGCCGAGACGCCGCTCTATCTGGCCGTGCTGCGGGGACACTACCA
GATGGCGGCCTGGCTGGTGGAAAATGGCGCGAATCCCTTTTTGCGGGTAG
AGGAAGGGAAAGAGGGAGGGTGGGGGGGGCGAGTGGCCGGCAGTGCGTGG
GAGCTGGCGGTGGAGAAGGGAGAAGAGGAGGGAGATCGTTGGTTGAGGCT
CTTTGGGGAAGGGAGGGAGCGAAAGAAGATGAATGGAAGAGAGGATGAGG
TGGGAATGCTGCTGGTCGCGTCATCCCCGCAGGGTGGGGATGGACGAAAC
GAGGAGAACCAAAAAAACGGAGGCACAAGGGGAGGAGGAGCTCCGGCAGC
GGCAGCGGCAGCAGCAGCAGCAGCAGCAGCACGACAAACATCTCTCTCAT
CATCATCATCAGCAGCAGCAGCAGCAGTTGCAGAATGTTACTCGACTCGC
CCGTCCATCGCCCTCAGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTAT
TCCCTCCCCGCCTCCCTCTGCGCTGGCCTCTGCCTTCTACCACGCTTGCG
GCAAGGGCGAGACAGAGCTCGTGGCCTCCTTCCTTCGCAGAGCACCGGCT
CTCGCAATGgtacgtcccctccctccctccctccctccgtcattctgatc
tcaacttggactagccggtctttctgacgcgcgccttccccctcgtccag
cagcccttctcacctccacctccctccctcccttcctccctcccttcctc
cctccctctccccagGCGAGAGACCACCACACTTTCGACATGACAGGCCT
CATGCTCGCGTGTGAGGGAGGGCACGTCTCCATCGTCAGTCTCCTCCTCG
AGGCCAGAGCGCCAGTGGCGGCTGTCGACGGAAACGGCAGCACCGCGCTG
CTCCTGGCTTGTCTAGGGGGTCACTTGGAGgtgggtgctctccctccctc
cctccctccctccctccctccctccctccctccctccctcccttcctccc
attcgttttcactctttgggctcgagcggcttccgcccatcagccccttc
ctccttcctgcccccctcctttccctccaagagtcaccgagcttcctcgg
gaaaaaagaccagcaggacgccataaacaccgatccactcacccctccct
gcctccctccttagGTCATACAACTCCTTGTGGAGGTGGCTGACGCTGAC
ATTGAATGCGCGGACAACGACGGCGACACGCCCTTGATGgtaaagacgga
gggagggagggaggagggagggagggagggaaggaagaaggggagacgcg
gctatgaagctggaatgcaagtactgttcgcgggaatccctccctctctt
gcatccatctctctctctccctctcaggtggctgcttcaatttatgtctt
ccacatcaagtgaatgccctattcctcacccctccctccctccctccctc
cctccctccctcctttctcccccgtcttgtgcagCTGGCAGCTTCGTGGG
GTTTCGCAGACTGCGTCTCCTTCCTTCTCAGCAAGGGCGCCTCTCCTCAC
GCGAAAAGCAAGGGAGGGAAAACTGCTCTGCATTGGGCTGCAAGGCACGG
GGAGAAGGGGGTCTGCGAGgtagggagggagggagggagggagggaggga
gggaacaaacgcagccaagggagagaaagaaagaaaatggggtagtgaca
cgcacccagccctccctctccctccctccctccctccctccctccctccc
tccttccctccctccttccctccctgcctgcgtgtccagGTCCTCCTCGC
CAATGGCGCCGACCCGTGCTCGGTCGACAAGGGGGGACGGACCGCTCTCT
GCACGGCCCGCGTCTTCCGCCACAACCAATGCGCTCGCCTCCTGGCCGAA
GCGGAGATGCGGCAGGTCTGAGACAGAGAGTTATTTCCTATACCACTTGT
TTCCCTCCTTCCCTCCCTCTCATCCTCACCCTTCCCTACCTTCACGATGG
GCACGGCCACAACCAAGAAAGTGCGCGAGAAAATAAGAGAGAAAGGAAGA
AAGGAAAAAACAAAGGATGTAAGGCAGGAAGGGGAAAAGTGCAGCACGGC
CACGAGAAAACACAGAGAAAGATACTCATGGCCTGACGAGGACCTCGACA
CAGCAGGCCGCTGTCAAGATAGAAGGGAGGAAGGAGGGAGGGAGGGACTG
TTTAAATGTGAGTACGTAGTTAAGAAAAGGCTACCGCTGTAATTTTATGG
GGTAAGGCGGAGGAGGGAGAGAAGGAGGGAGGAAAGGAATGAGAAGAGAT
CCCCGTGTGGATATGTACAAACAACGCATGATTCTGTGAAGGGGGAGGAA
GGGAGGGA
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protein sequence of NO27G01800.2

>NO27G01800.2-protein ID=NO27G01800.2-protein|Name=NO27G01800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=825bp
MKLPSEKWPLPPPMGLQQHQHQQQQHQHHEHQQLQQQQHRMAPPTSICSL
DSFPSVATVVAAPLTTAPCAQHCDDDCADAMLYKNHIQDDQDDAVSTHST
CSSSSSSCSSLPPNPMCLDPIPDSHPLPRLPPLFCAPTSLPPILPPPLPQ
LSLAEAAFLYECCSQGLTSYLQRVLAAAVERCLAMLPPVEKNEGKEDGEE
REGGRKGGQTSAISVTSTTRDNYAGAALTPAAAATTVPAAAIRDPRHSAL
VHSVAFALLTCPVPQQYSRSPFMAACANGQLDTITWALSLLLPSLPPSLP
QPLPPSTPCASPSLPSSSSSPSSSSLLLDQQDDTGATALSLAAAEGWEEI
VLLLLHVQGRGGSRAGWRKGDNEGYSPFLWAVGKNHLGVARALLERWQDE
EGNREEDGKEEVAMVLPLSRISPAQPPPPPPPPSLPPSLPPSHLLNTPGR
VWAETPLYLAVLRGHYQMAAWLVENGANPFLRVEEGKEGGWGGRVAGSAW
ELAVEKGEEEGDRWLRLFGEGRERKKMNGREDEVGMLLVASSPQGGDGRN
EENQKNGGTRGGGAPAAAAAAAAAAAARQTSLSSSSSAAAAAVAECYSTR
PSIALSSLPPSLPPSLIPSPPPSALASAFYHACGKGETELVASFLRRAPA
LAMARDHHTFDMTGLMLACEGGHVSIVSLLLEARAPVAAVDGNGSTALLL
ACLGGHLEVIQLLVEVADADIECADNDGDTPLMLAASWGFADCVSFLLSK
GASPHAKSKGGKTALHWAARHGEKGVCEVLLANGADPCSVDKGGRTALCT
ARVFRHNQCARLLAEAEMRQCARK*
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protein sequence of NO27G01800.1

>NO27G01800.1-protein ID=NO27G01800.1-protein|Name=NO27G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=822bp
MKLPSEKWPLPPPMGLQQHQHQQQQHQHHEHQQLQQQQHRMAPPTSICSL
DSFPSVATVVAAPLTTAPCAQHCDDDCADAMLYKNHIQDDQDDAVSTHST
CSSSSSSCSSLPPNPMCLDPIPDSHPLPRLPPLFCAPTSLPPILPPPLPQ
LSLAEAAFLYECCSQGLTSYLQRVLAAAVERCLAMLPPVEKNEGKEDGEE
REGGRKGGQTSAISVTSTTRDNYAGAALTPAAAATTVPAAAIRDPRHSAL
VHSVAFALLTCPVPQQYSRSPFMAACANGQLDTITWALSLLLPSLPPSLP
QPLPPSTPCASPSLPSSSSSPSSSSLLLDQQDDTGATALSLAAAEGWEEI
VLLLLHVQGRGGSRAGWRKGDNEGYSPFLWAVGKNHLGVARALLERWQDE
EGNREEDGKEEVAMVLPLSRISPAQPPPPPPPPSLPPSLPPSHLLNTPGR
VWAETPLYLAVLRGHYQMAAWLVENGANPFLRVEEGKEGGWGGRVAGSAW
ELAVEKGEEEGDRWLRLFGEGRERKKMNGREDEVGMLLVASSPQGGDGRN
EENQKNGGTRGGGAPAAAAAAAAAAAARQTSLSSSSSAAAAAVAECYSTR
PSIALSSLPPSLPPSLIPSPPPSALASAFYHACGKGETELVASFLRRAPA
LAMARDHHTFDMTGLMLACEGGHVSIVSLLLEARAPVAAVDGNGSTALLL
ACLGGHLEVIQLLVEVADADIECADNDGDTPLMLAASWGFADCVSFLLSK
GASPHAKSKGGKTALHWAARHGEKGVCEVLLANGADPCSVDKGGRTALCT
ARVFRHNQCARLLAEAEMRQV*
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Synonyms
Publications