NO27G01640, NO27G01640 (gene) Nannochloropsis oceanica

Overview
NameNO27G01640
Unique NameNO27G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4010
Alignment locationchr27:544224..548233 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:544224..548233 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01640.2NO27G01640.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01640.1NO27G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|305155gene_9917Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01640.2NO27G01640.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01640.1NO27G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01640 ID=NO27G01640|Name=NO27G01640|organism=Nannochloropsis oceanica|type=gene|length=4010bp
CTACTTCGAGGGTTGTCTGTGCCTTGTGTGCAATGCGTTGGACGGATGAG
TGAACGATGTCAAGGGGAAAAGGCAGGAAGAGAGGGAGGGTGTCATTCAT
GAAGGAGCAACTTGATCGATCGATCGCCCATTTTTTACCCTTATTAGAAA
ACCCACATACACAACACATACCTACATCCTACCCCTCACAGAGAAAGCCA
AACGAAACCAATTCGTGCTCCAAGCAACACCAACAGCACTAGTATGGGGA
AGAAATCGATGCCTCTCCACCCTGCTCCTGCTTCCCCCCCGTCCCCTCCT
TGTCTTTCGAGACCCTCCGGCAGTGCTACCACCATTACTAGCAGCAGTAT
GTGCGCCGCCCCTGCCAGCGTCGGCGCAGCCAACAACGAGGCTGATAGAC
ATAGCTGTAGTGTTAGGGAGAGACAAGAAGGAAATGGAGGGAATAGgtgg
gtgcgttcttacagtcgtggagtactcgggggaaaagggagcgagggggg
ggagcgagggggggagatggagaggagaatgaagaggatgcgaggcgtgg
aggggaaaatgtaacgggaggaggacatacgtgacgagtgctgtatacgt
accagcacgttcggatagcgaacggaccggtcatgcccttccgtactgat
ttgacgcgcttcccctccctccctcctttctccttccctcactccttccc
tcccttcctccctccttttcctccttctgaccatagTTATGACGAGCATC
ATCGCTCCCAGCTTTTGTGTACGTCTTCATCGTCCTCTTCCCCAGTTTCC
TATCCTGCCACCTCGCCATCTCTTTGTTCAGGTGGCCGGGAGCAACAGCA
GCAGCACCACCACCACCACCAGGAGTACCACCACCACCAGCAGCAGCAGC
AGCAGCAGCAGCAGCGGATTAGGACGGAGGAAATGGAAGGTGCCTGGGGA
GGTAGATGGAAGATAAAGAAAGTAAAAAGCAAGGAGGAGGGGGAGGAGGA
GGCTATGAGCATGGAGGGGTTGGTGGCATCGGTGCAGCGCTTAAAATGGG
AACGGGATGCGgtgagtggttgagggtcgaagggagggagggaagagggg
aaagagagaaggggagcgcggtgttgaagcttgtactcactaacttattt
tatttcttgaatatgtgtatacgtaaagATGATGTCATTGAAGGCAGAAG
CCAAGGAAAAGGATCGACGCATCGCCCTGCTCCAAGCACAGgtatgcctc
ccctccctccctccctcccttcctacccccctacctccctacctccctcc
cttcgctcccccactaggcgcaggtacgcctgccctcctccctccctccc
tccctcccgttcattcctagaagcagacttcaactgtgttttttttttaa
atcacccttccctccctccttccctccctccctccccctgtccctccccc
tctctttccctgtctttcttctccagGTGGCGAAGGTGCACGAGGATATG
ACGGCGGCAGTGGCGACTAGGCAAGAGGAATGGAGGCGGAAAAAAAAGGC
ATTGAAGgtaggcagggagggagggagggagggagggagggagggaggga
gggagggactgcctgacaaggctcttacttactttgtctttcgtgtgttc
gcctctccctccctccctccctccctctttcagGAGCTGGAGAAGAAGAT
GAAGGGCAGCGTGCACCGCACCCTCACTGAATGGGAAATTGCGCGAAAAG
AATGGTCGGAGAAGGAGGGGAAGATGGAGgtatggagggagggagggagg
gagggagggagggagggagggcatgcacagtgttgttgcttagttgagca
cagagagcgtgggcgaagaaggaagagggagggagggagggagggaggga
atcgatttatttgacattccgcctttcctccctccctccctccctccctc
cctccctccctccctcagGCCACCATTACCACCCTACAGGGGGAGAAGGA
GACACTCTCACGGCGCCTCGAGCTGCTGGTCTCTCAAGGAACCAAAAGGG
AAAAACGGCTGATGTTGTTGGAGgtagggagggagggagtgagggaggga
gggagggattgaagatggatgggtgggccaggaaaacgcaacagagcact
tacgcttcgcgtcatccctccctccctccctccctccctccctccctccc
ttccttccttccctccctcgtccatctagGAGAAAGCCAAGAGGCAGGAC
AAGGACACAACCCGCCTCTCTCAGCTCCAGGAGAAAAAAGAGAAGTATGA
GCGAAAGTGCGACCAGCTGACGGTGCTCCTGGAGgtgagtggtaccttca
ttcctccctccttccctccctccctccctctctccttcccctcgtccctc
cttcactctcctgcgcagtttcctccatacaatcacatccacacacctcc
ctccctccctccctccctccctccccctcctcagGCCCGCGAGCGTGCCT
TGAGCGACAGCGCCCTTCGTTCTCGCCTCCTCAAAGAGGAGGTGGAGAGG
TTCCAGACACACACCGCAGGGCTCGAAGCCCAGCTTGCGCTCGTGTTGGA
GAAGAGGGAGGGGGAGGCTGGTTACCGAAAGGAGAGGGACGGGTTGCAGC
AGGAGgtacgaagagagggaggaagggggcgagggagggatgggggagga
ggaggctttggcgtctgtggattacgtgcctcatctctccctcccttcct
ccctccttccttcgatgtttttcgcacacaccttacgtacctgacctctc
ccttcctccctccctccttcattccttatccccctccctccctccctccc
tccatccatccttcctcccattcaccgctccctccctccctccctccctc
cctccctccctccctccctccctccctccctccctccctccctccctccc
tccctccctcagCTCCTCACCCTCAAAGAGCGCTATCAGCAAGAATCAAA
TTCTTACTCGTCGACTGTGACTGCATTGAGGGAGCAAACGAAGGTTCTAG
AAGGTCACGTGATGAAACGCTTTGGGCAAGTGAGGGACTTGAAGGAGGCG
CTGGCAGGGAGGGAGGAGGAGGTGAAGAGGCTGCAGCATGTAAAGCACAT
GATGAAGgtgagagagggagagagggatggcgggagggagggccggggaa
gaaggtgagcagcagctgctttcacagggaaacatgccccgacaaacgtc
ttcatccatcttctcacgctctctccctccttccctccttccctccctca
gTATCTCGAGCGTGAAAATCACAAGTTGAAACGCCTCCTGCTGAGTAGCA
AGGAGGAAGGGGAGGAGGCGAGGAAAGAGCTGCGGGGGACACGGCAGGTC
CTCGTGGCAATGCAAGAGGAGGAAGTAAAGGGTTGGAGGGCACGTGCAAA
GTTGCTTTCGCTGGTGGGGAGGGAGGAGGGGAGGGAGGAAGAGGAGAAGG
AGAGGAGAGGACGACCGTTGTCGGTGGTGCAGGAAGAAGAGGAAGGGGAG
GAGGAGGAGGGGGAGGGGAGAGGGAGGGAGGGAGGGAGGGAGGCAGGGAG
GCAGGGAGGCAGGGAGGGAGGGAGGTGGAGGAAGGCTTACGGCCTAACAG
CGCCCGGCCGACTGACCTTAGACGGCAGCAAGCCTCGGAACAGCAAAAGC
AAGAGCAGCAGCAGCGGCAGCCACCGCATGAGGAGCAGCAGCAAGAAACA
TCACCAGCGTCACTCACATGCGTCCTCCCTCCCGTGTTGGCCTCTGTCTC
CTCCTTCTTCCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCGCCAGTTTTT
TCCTCCTCGTCTTCCTCCTCCTCCCCTCCCTATTTCAAATGAACTCAGGC
AGCAGCAGCAGCGGCAACAAGAACAACAACAAATAAGGCATGTGTATAGC
AGTAAAAAGTAAAGCAAAACGAATCCTTCGAGTGAAGAAGTAATAAATCA
CGTCCCCCCA
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protein sequence of NO27G01640.2

>NO27G01640.2-protein ID=NO27G01640.2-protein|Name=NO27G01640.2|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MPFRTDLTRFPSLPPFSFPHSFPPFLPPFPPSDHSYDEHHRSQLLCTSSS
SSSPVSYPATSPSLCSGGREQQQQHHHHHQEYHHHQQQQQQQQQRIRTEE
MEGAWGGRWKIKKVKSKEEGEEEAMSMEGLVASVQRLKWERDAMMSLKAE
AKEKDRRIALLQAQVAKVHEDMTAAVATRQEEWRRKKKALKELEKKMKGS
VHRTLTEWEIARKEWSEKEGKMEATITTLQGEKETLSRRLELLVSQGTKR
EKRLMLLEEKAKRQDKDTTRLSQLQEKKEKYERKCDQLTVLLEARERALS
DSALRSRLLKEEVERFQTHTAGLEAQLALVLEKREGEAGYRKERDGLQQE
LLTLKERYQQESNSYSSTVTALREQTKVLEGHVMKRFGQVRDLKEALAGR
EEEVKRLQHVKHMMKYLERENHKLKRLLLSSKEEGEEARKELRGTRQVLV
AMQEEEVKGWRARAKLLSLVGREEGREEEEKERRGRPLSVVQEEEEGEEE
EGEGRGREGGREAGRQGGREGGRWRKAYGLTAPGRLTLDGSKPRNSKSKS
SSSGSHRMRSSSKKHHQRHSHASSLPCWPLSPPSSSSSSSSSSSSPVFSS
SSSSSSPPYFK*
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protein sequence of NO27G01640.1

>NO27G01640.1-protein ID=NO27G01640.1-protein|Name=NO27G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp
MGKKSMPLHPAPASPPSPPCLSRPSGSATTITSSSMCAAPASVGAANNEA
DRHSCSVRERQEGNGGNSYDEHHRSQLLCTSSSSSSPVSYPATSPSLCSG
GREQQQQHHHHHQEYHHHQQQQQQQQQRIRTEEMEGAWGGRWKIKKVKSK
EEGEEEAMSMEGLVASVQRLKWERDAMMSLKAEAKEKDRRIALLQAQVAK
VHEDMTAAVATRQEEWRRKKKALKELEKKMKGSVHRTLTEWEIARKEWSE
KEGKMEATITTLQGEKETLSRRLELLVSQGTKREKRLMLLEEKAKRQDKD
TTRLSQLQEKKEKYERKCDQLTVLLEARERALSDSALRSRLLKEEVERFQ
THTAGLEAQLALVLEKREGEAGYRKERDGLQQELLTLKERYQQESNSYSS
TVTALREQTKVLEGHVMKRFGQVRDLKEALAGREEEVKRLQHVKHMMKYL
ERENHKLKRLLLSSKEEGEEARKELRGTRQVLVAMQEEEVKGWRARAKLL
SLVGREEGREEEEKERRGRPLSVVQEEEEGEEEEGEGRGREGGREAGRQG
GREGGRWRKAYGLTAPGRLTLDGSKPRNSKSKSSSSGSHRMRSSSKKHHQ
RHSHASSLPCWPLSPPSSSSSSSSSSSSPVFSSSSSSSSPPYFK*
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Synonyms
Publications