NO27G01620, NO27G01620 (gene) Nannochloropsis oceanica

Overview
NameNO27G01620
Unique NameNO27G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length315
Alignment locationchr27:537715..538029 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:537715..538029 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO27G01620 vs. NCBI_GenBank
Match: EWM20106.1 (hypothetical protein Naga_101772g1 [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 1.200e-28
Identity = 75/99 (75.76%), Postives = 76/99 (76.77%), Query Frame = 0 
Query:   17 GSTAVAVHHLDQTEIKRIHDK-----------AATDVAQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 105
            GSTAVAVHHLDQTEIKRI DK                   KADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAI EN+ KRGG GGPQD
Sbjct:   59 GSTAVAVHHLDQTEIKRIQDKXXXXXXXXXXXXXXXXXXXKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAIRENQTKRGGGGGPQD 157
[Close]
BLAST of NO27G01620 vs. NCBI_GenBank
Match: EWM23030.1 (hypothetical protein Naga_100740g1 [Nannochloropsis gaditana])

HSP 1 Score: 110.9 bits (276), Expect = 2.400e-21
Identity = 75/144 (52.08%), Postives = 77/144 (53.47%), Query Frame = 0 
Query:    1 MVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVARVEGE----------------------------------------RRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 105
            MV V+VAVLGLVAAVAGSTAVAVHHLDQTEIKRI DKA                                                                LRAEVERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:    1 MVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKAXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAEVERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 144
[Close]
BLAST of NO27G01620 vs. NCBI_GenBank
Match: EWM23032.1 (hypothetical protein Naga_100849g4 [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 2.000e-15
Identity = 69/166 (41.57%), Postives = 72/166 (43.37%), Query Frame = 0 
Query:    1 MVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVARVEGERRL--------------------------------------------------------------SEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 105
            MV V+VAVLGLVAAVAGSTAVAVHHLDQTEIKRI DKA  DV               +                                                                         YKYDLRLTQTQDFKPYQAAI EN+ KRGGAGGPQD
Sbjct:    1 MVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKATADVXXXXXXXXXXXXXXAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKYDLRLTQTQDFKPYQAAIRENQTKRGGAGGPQD 166
[Close]
BLAST of NO27G01620 vs. NCBI_GenBank
Match: EWM23033.1 (hypothetical protein Naga_100849g2 [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 2.000e-15
Identity = 68/159 (42.77%), Postives = 71/159 (44.65%), Query Frame = 0 
Query:    1 MVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVARVEGE-------------------------------------------------------RRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 105
            +V V+VAVLGLVAAVAGSTAVAVHHLDQTEIKRI DK                                                                                     ERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:   19 VVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKXXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 177
[Close]
BLAST of NO27G01620 vs. NCBI_GenBank
Match: EWM20226.1 (hypothetical protein Naga_100681g5 [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 4.800e-14
Identity = 58/128 (45.31%), Postives = 59/128 (46.09%), Query Frame = 0 
Query:   17 GSTAVAVHHLDQTEIKRIHDKAATDV----------------------------------------AQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 105
            GSTAVAVHHLDQTEIKRI DKA  DV                                                                 ERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:   93 GSTAVAVHHLDQTEIKRIQDKATADVXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 220
[Close]
BLAST of NO27G01620 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 77.4 bits (189), Expect = 2.900e-11
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 0 
Query:    9 LGLVAAVAGSTAVAVHHLDQ----TEIKRIHDKAATDVAQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 105
            +G V  VAG+TAV V   DQ    TEIK +  KAA       A++ARVE +R +SE   +AEVER+K +++L  TQD++PYQAA+++ + KRGG  G ++
Sbjct:   77 IGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAA-------AEIARVEDKRAMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEE 169
[Close]
BLAST of NO27G01620 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 72.4 bits (176), Expect = 9.400e-10
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:    9 LGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQ-----------AKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 105
            +G V  VAG+TAV V   DQTEIK I  KAA ++AQ                        +SE   +AEVER+K +++L  TQD++PYQAA+++ + KRGG GG ++
Sbjct:   95 IGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEE 201
[Close]
BLAST of NO27G01620 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 72.4 bits (176), Expect = 9.400e-10
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:    9 LGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQ-----------AKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 105
            +G V  VAG+TAV V   DQTEIK I  KAA ++AQ                        +SE   +AEVER+K +++L  TQD++PYQAA+++ + KRGG GG ++
Sbjct:   43 IGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEE 149
The following BLAST results are available for this feature:
BLAST of NO27G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM20106.11.200e-2875.76hypothetical protein Naga_101772g1 [Nannochloropsi... [more]
EWM23030.12.400e-2152.08hypothetical protein Naga_100740g1 [Nannochloropsi... [more]
EWM23032.12.000e-1541.57hypothetical protein Naga_100849g4 [Nannochloropsi... [more]
EWM23033.12.000e-1542.77hypothetical protein Naga_100849g2 [Nannochloropsi... [more]
EWM20226.14.800e-1445.31hypothetical protein Naga_100681g5 [Nannochloropsi... [more]
EWM20057.12.900e-1146.00hypothetical protein Naga_102002g2 [Nannochloropsi... [more]
EWM20145.19.400e-1041.12hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20146.19.400e-1041.12hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01620.1NO27G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01620.1NO27G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01620 ID=NO27G01620|Name=NO27G01620|organism=Nannochloropsis oceanica|type=gene|length=315bp
ATGGTGAAAGTGTCGGTAGCTGTCTTGGGCTTGGTGGCGGCGGTTGCTGG
CTCTACAGCTGTGGCGGTCCATCATCTCGACCAGACGGAGATCAAGCGCA
TTCACGACAAGGCGGCGACGGACGTCGCTCAGGCCAAAGCAGACGTCGCG
CGCGTCGAGGGCGAGCGAAGGTTGTCGGAGGAGCGTTTGAGGGCGGAGGT
GGAGCGGTACAAGTATGACCTGCGACTGACGCAAACGCAGGACTTCAAAC
CGTACCAGGCCGCCATTTTGGAGAACAAAATAAAGAGGGGAGGAGCCGGC
GGACCGCAGGACTAG
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protein sequence of NO27G01620.1

>NO27G01620.1-protein ID=NO27G01620.1-protein|Name=NO27G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVA
RVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAG
GPQD*
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Synonyms
Publications