NO27G01600, NO27G01600 (gene) Nannochloropsis oceanica

Overview
NameNO27G01600
Unique NameNO27G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length683
Alignment locationchr27:534343..535025 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:534343..535025 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO27G01600 vs. NCBI_GenBank
Match: EWM20106.1 (hypothetical protein Naga_101772g1 [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 1.800e-28
Identity = 75/99 (75.76%), Postives = 76/99 (76.77%), Query Frame = 0 
Query:   70 GSTAVAVHHLDQTEIKRIHDK-----------AATDVAQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 158
            GSTAVAVHHLDQTEIKRI DK                   KADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAI EN+ KRGG GGPQD
Sbjct:   59 GSTAVAVHHLDQTEIKRIQDKXXXXXXXXXXXXXXXXXXXKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAIRENQTKRGGGGGPQD 157
[Close]
BLAST of NO27G01600 vs. NCBI_GenBank
Match: EWM23030.1 (hypothetical protein Naga_100740g1 [Nannochloropsis gaditana])

HSP 1 Score: 112.8 bits (281), Expect = 9.400e-22
Identity = 75/144 (52.08%), Postives = 77/144 (53.47%), Query Frame = 0 
Query:   54 MVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVARVEGE----------------------------------------RRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 158
            MV V+VAVLGLVAAVAGSTAVAVHHLDQTEIKRI DKA                                                                LRAEVERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:    1 MVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKAXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAEVERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 144
[Close]
BLAST of NO27G01600 vs. NCBI_GenBank
Match: EWM20226.1 (hypothetical protein Naga_100681g5 [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 1.300e-18
Identity = 107/197 (54.31%), Postives = 110/197 (55.84%), Query Frame = 0 
Query:    1 MLCNLATKAGAVAWTRGAQSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDV----------------------------------------AQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 158
            MLC+LATKAGA+AW RGAQSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 GSTAVAVHHLDQTEIKRI DKA  DV                                                                 ERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:   24 MLCSLATKAGAMAWRRGAQSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTAVAVHHLDQTEIKRIQDKATADVXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 220
[Close]
BLAST of NO27G01600 vs. NCBI_GenBank
Match: EWM23033.1 (hypothetical protein Naga_100849g2 [Nannochloropsis gaditana])

HSP 1 Score: 94.0 bits (232), Expect = 4.500e-16
Identity = 68/160 (42.50%), Postives = 72/160 (45.00%), Query Frame = 0 
Query:   53 EMVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVARVEGE-------------------------------------------------------RRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 158
            ++V V+VAVLGLVAAVAGSTAVAVHHLDQTEIKRI DK                                                                                     ERYKYDLRLTQTQDFKPYQAAI EN+IKRGGAGGPQD
Sbjct:   18 QVVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKXXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERYKYDLRLTQTQDFKPYQAAIRENQIKRGGAGGPQD 177
[Close]
BLAST of NO27G01600 vs. NCBI_GenBank
Match: EWM23032.1 (hypothetical protein Naga_100849g4 [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 7.700e-16
Identity = 69/166 (41.57%), Postives = 72/166 (43.37%), Query Frame = 0 
Query:   54 MVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKADVARVEGERRL--------------------------------------------------------------SEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 158
            MV V+VAVLGLVAAVAGSTAVAVHHLDQTEIKRI DKA  DV               +                                                                         YKYDLRLTQTQDFKPYQAAI EN+ KRGGAGGPQD
Sbjct:    1 MVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKATADVXXXXXXXXXXXXXXAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKYDLRLTQTQDFKPYQAAIRENQTKRGGAGGPQD 166
[Close]
BLAST of NO27G01600 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 3.400e-11
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 0 
Query:   62 LGLVAAVAGSTAVAVHHLDQ----TEIKRIHDKAATDVAQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 158
            +G V  VAG+TAV V   DQ    TEIK +  KAA       A++ARVE +R +SE   +AEVER+K +++L  TQD++PYQAA+++ + KRGG  G ++
Sbjct:   77 IGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAA-------AEIARVEDKRAMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEE 169
[Close]
BLAST of NO27G01600 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 72.8 bits (177), Expect = 1.100e-9
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:   62 LGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQ-----------AKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 158
            +G V  VAG+TAV V   DQTEIK I  KAA ++AQ                        +SE   +AEVER+K +++L  TQD++PYQAA+++ + KRGG GG ++
Sbjct:   95 IGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEE 201
[Close]
BLAST of NO27G01600 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 72.8 bits (177), Expect = 1.100e-9
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:   62 LGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQ-----------AKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRGGAGGPQD 158
            +G V  VAG+TAV V   DQTEIK I  KAA ++AQ                        +SE   +AEVER+K +++L  TQD++PYQAA+++ + KRGG GG ++
Sbjct:   43 IGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEE 149
The following BLAST results are available for this feature:
BLAST of NO27G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM20106.11.800e-2875.76hypothetical protein Naga_101772g1 [Nannochloropsi... [more]
EWM23030.19.400e-2252.08hypothetical protein Naga_100740g1 [Nannochloropsi... [more]
EWM20226.11.300e-1854.31hypothetical protein Naga_100681g5 [Nannochloropsi... [more]
EWM23033.14.500e-1642.50hypothetical protein Naga_100849g2 [Nannochloropsi... [more]
EWM23032.17.700e-1641.57hypothetical protein Naga_100849g4 [Nannochloropsi... [more]
EWM20057.13.400e-1146.00hypothetical protein Naga_102002g2 [Nannochloropsi... [more]
EWM20145.11.100e-941.12hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20146.11.100e-941.12hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01600.1NO27G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|305329gene_9921Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01600.1NO27G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01600 ID=NO27G01600|Name=NO27G01600|organism=Nannochloropsis oceanica|type=gene|length=683bp
ATGTTGTGCAACTTGGCCACGAAAGCGGGAGCCGTGGCGTGGACACGGGG
CGCGCAATCCGGTCGAGgtaaggtggcttgagctcatgcatattggggag
ggctttagggtggtggggtggggagggacgtgcggtgcacgcggccgcaa
actgccggcggcatgttgatttattcccgtctgtctgtctgtcatgtttg
aatctcaatccttattgtgcggacaaggaaccacaccaaggtgttcacgc
acaagcacatccatacgcgccaacagGGAAGGGACGCGGGCTGCGGGGGG
CGTCTCTCTCGACAACCCACACGGGTACAGGCACGGGCAGTGAAGGGGGC
TCCGATAAGACATTTGAAATGGTGAAAGTGTCGGTAGCTGTCTTGGGCTT
GGTGGCGGCGGTTGCTGGCTCTACAGCTGTGGCGGTCCATCATCTCGACC
AGACGGAGATCAAGCGCATTCACGACAAGGCGGCGACGGACGTCGCTCAG
GCCAAAGCAGACGTCGCGCGCGTCGAGGGCGAGCGAAGGTTGTCGGAGGA
GCGTTTGAGGGCGGAGGTGGAGCGGTACAAGTATGACCTGCGACTGACGC
AAACGCAGGACTTCAAACCGTACCAGGCCGCCATTTTGGAGAACAAAATA
AAGAGGGGAGGAGCCGGCGGACCGCAGGACTAG
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protein sequence of NO27G01600.1

>NO27G01600.1-protein ID=NO27G01600.1-protein|Name=NO27G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MLCNLATKAGAVAWTRGAQSGRGKGRGLRGASLSTTHTGTGTGSEGGSDK
TFEMVKVSVAVLGLVAAVAGSTAVAVHHLDQTEIKRIHDKAATDVAQAKA
DVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAILENKIKRG
GAGGPQD*
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Synonyms
Publications